IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.34   STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1581	 67.34	0	1643852..1644889	+	345	146277639	-	Rsph17025_1600	-	cell shape determining protein MreB
1582	 69.73	0	1644920..1645834	+	304	146277640	-	Rsph17025_1601	-	rod shape-determining protein MreC
1583	 69.26	0	1645827..1646366	+	179	146277641	-	Rsph17025_1602	-	hypothetical protein
1584	 68.93	0	1646363..1648309	+	648	146277642	-	Rsph17025_1603	-	peptidoglycan glycosyltransferase
1585	 66.14	0	1648317..1649456	+	379	146277643	-	Rsph17025_1604	-	rod shape-determining protein RodA
1586	 67.56	0	1649478..1650377	-	299	146277644	-	Rsph17025_1605	-	RpiR family transcriptional regulator
1587	 69.64	0	1650444..1651283	+	279	146277645	-	Rsph17025_1606	-	N-formylglutamate amidohydrolase
1588	 62.13	-1	1651287..1651793	+	168	146277646	-	Rsph17025_1607	-	tripartite ATP-independent periplasmic transporter DctQ
1589	 64.18	-1	1651793..1653118	+	441	146277647	-	Rsph17025_1608	-	TRAP C4-dicarboxylate transport system permease DctM subunit
1590	 65.03	0	1653176..1654213	+	345	146277648	-	Rsph17025_1609	-	TRAP dicarboxylate transporter- DctP subunit
1591	 63.91	-1	1654273..1655652	+	459	146277649	-	Rsph17025_1610	-	glutamate--ammonia ligase
1592	 68.68	0	1655666..1657054	+	462	146277650	-	Rsph17025_1611	-	aldehyde dehydrogenase
1593	 66.49	0	1657051..1658196	+	381	146277651	-	Rsph17025_1612	-	iron-containing alcohol dehydrogenase
1594	 72.45	+1	1658214..1659458	+	414	146277652	-	Rsph17025_1613	-	FAD dependent oxidoreductase
1595	 67.95	0	1659464..1659775	-	103	146277653	-	Rsph17025_1614	-	hypothetical protein
1596	 70.09	0	1659863..1660681	-	272	146277654	-	Rsph17025_1615	-	2,5-didehydrogluconate reductase
1597	 66.81	0	1660752..1661471	-	239	146277655	-	Rsph17025_1616	-	RNA polymerase, sigma 28 subunit, FliA/WhiG
1598	 75.59	+2	1661468..1662487	-	339	146277656	-	Rsph17025_1617	-	hypothetical protein
1599	 70.41	0	1662491..1664599	-	702	146277657	-	Rsph17025_1618	-	flagellar biosynthesis protein FlhA
1600	 72.59	+1	1665004..1665324	+	106	146277658	-	Rsph17025_1619	-	hypothetical protein
1601	 74.37	+1	1665405..1666403	+	332	146277659	-	Rsph17025_1620	-	hypothetical protein
1602	 75.37	+2	1666400..1667077	+	225	146277660	-	Rsph17025_1621	-	flagellar basal body P-ring biosynthesis protein-like protein
1603	 63.67	-1	1667114..1667413	+	99	146277661	-	Rsph17025_1622	-	hypothetical protein
1604	 71.69	0	1667442..1667819	+	125	146277662	-	Rsph17025_1623	-	hypothetical protein
1605	 75.36	+2	1667911..1668531	-	206	146277663	-	Rsph17025_1624	-	Sel1 domain-containing protein
1606	 69.44	0	1668528..1668923	-	131	146277664	-	Rsph17025_1625	-	hypothetical protein
1607	 71.43	0	1669104..1669607	+	167	146277665	-	Rsph17025_1626	-	hypothetical protein
1608	 75.56	+2	1669915..1670229	-	104	146277666	-	Rsph17025_1627	-	hypothetical protein
1609	 67.95	0	1670253..1670642	-	129	146277667	-	Rsph17025_1628	-	flagellin-specific chaperone FliS-like protein
1610	 74.87	+1	1670757..1671353	-	198	146277668	-	Rsph17025_1629	-	hypothetical protein
1611	 71.86	+1	1671491..1674670	-	1059	146277669	-	Rsph17025_1630	-	putative CheA signal transduction histidine kinase
1612	 66.42	0	1674699..1675103	-	134	146277670	-	Rsph17025_1631	-	response regulator receiver protein
1613	 70.13	0	1675188..1677152	-	654	146277671	-	Rsph17025_1632	-	methyl-accepting chemotaxis sensory transducer
1614	 74.12	+1	1677149..1677886	-	245	146277672	-	Rsph17025_1633	-	cobyrinic acid a,c-diamide synthase
1615	 68.62	0	1677890..1678402	-	170	146277673	-	Rsph17025_1634	-	putative CheW protein
1616	 72.58	+1	1678387..1679535	-	382	146277674	-	Rsph17025_1635	-	response regulator receiver modulated CheB methylesterase
1617	 69.63	0	1679535..1680344	-	269	146277675	-	Rsph17025_1636	-	protein-glutamate O-methyltransferase
1618	 70.58	0	1680341..1681540	-	399	146277676	-	Rsph17025_1637	-	putative CheA signal transduction histidine kinase
1619	 57.84	-2	1681726..1682031	-	101	146277677	-	Rsph17025_1638	-	hypothetical protein
1620	 73.18	+1	1682458..1683594	+	378	146277678	-	Rsph17025_1639	-	sigma-54 factor interaction domain-containing protein
1621	 70.99	0	1683608..1683931	+	107	146277679	-	Rsph17025_1640	-	flagellar hook-basal body complex subunit FliE
1622	 73.07	+1	1683951..1685669	+	572	146277680	-	Rsph17025_1641	-	flagellar M-ring protein FliF
1623	 66.67	0	1685671..1686690	+	339	146277681	-	Rsph17025_1642	-	flagellar motor switch protein FliG
1624	 77.61	+2	1686694..1687488	+	264	146277682	-	Rsph17025_1643	-	hypothetical protein
1625	 71.03	0	1687485..1688813	+	442	146277683	-	Rsph17025_1644	-	FliI/YscN family ATPase
1626	 75.60	+2	1688815..1689228	+	137	146277684	-	Rsph17025_1645	-	hypothetical protein
1627	 75.93	+2	1689299..1691068	+	589	146277685	-	Rsph17025_1646	-	flagellar hook-length control protein
1628	 67.01	0	1691079..1691657	+	192	146277686	-	Rsph17025_1647	-	flagellar basal body-associated protein FliL
1629	 66.36	0	1691661..1692632	+	323	146277687	-	Rsph17025_1648	-	surface presentation of antigens (SPOA) protein
1630	 68.35	0	1692675..1692971	+	98	146277688	-	Rsph17025_1649	-	flagellar motor switch protein FliN
1631	 70.54	0	1693048..1693305	+	85	146277689	-	Rsph17025_1650	-	hypothetical protein
1632	 66.80	0	1693302..1694042	+	246	146277690	fliP	Rsph17025_1651	-	flagellar biosynthesis protein FliP
1633	 63.30	-1	1694042..1694308	+	88	146277691	-	Rsph17025_1652	-	flagellar biosynthetic protein FliQ
1634	 70.29	0	1694308..1695108	+	266	146277692	-	Rsph17025_1653	-	flagellar biosynthetic protein FliR
1635	 68.33	0	1695095..1696237	+	380	146277693	-	Rsph17025_1654	-	flagellar biosynthetic protein FlhB
1636	 71.93	+1	1696307..1697047	+	246	146277694	-	Rsph17025_1655	-	hypothetical protein
1637	 74.02	+1	1697054..1697719	+	221	146277695	-	Rsph17025_1656	-	hypothetical protein
1638	 71.79	0	1697725..1699050	-	441	146277696	-	Rsph17025_1657	-	RNA polymerase, sigma 54 subunit, RpoN
1639	 65.06	0	1699244..1700740	-	498	146277697	-	Rsph17025_1658	-	flagellin domain-containing protein
1640	 68.00	0	1700961..1702613	+	550	146277698	-	Rsph17025_1659	-	flagellar hook-associated 2 domain-containing protein
1641	 69.57	0	1702641..1703741	-	366	146277699	-	Rsph17025_1660	-	sigma-54 dependent trancsriptional regulator
1642	 72.16	+1	1703887..1704669	-	260	146277700	-	Rsph17025_1661	-	lytic transglycosylase, catalytic
1643	 70.89	0	1704687..1705916	-	409	146277701	-	Rsph17025_1662	-	flagellin-like protein
1644	 74.30	+1	1705924..1710021	-	1365	146277702	-	Rsph17025_1663	-	flagellar hook-associated protein FlgK
1645	 71.29	0	1710117..1710419	-	100	146277703	-	Rsph17025_1664	-	hypothetical protein
1646	 70.16	0	1710419..1711534	-	371	146277704	flgI	Rsph17025_1665	-	flagellar basal body P-ring protein
1647	 70.70	0	1711531..1712199	-	222	146277705	-	Rsph17025_1666	-	flagellar L-ring protein
1648	 66.41	0	1712207..1712995	-	262	146277706	-	Rsph17025_1667	-	flagellar basal-body rod protein FlgG
1649	 70.37	0	1713049..1713804	-	251	146277707	-	Rsph17025_1668	-	hypothetical protein
1650	 70.44	0	1713813..1715084	-	423	146277708	-	Rsph17025_1669	-	flagellar basal body FlaE domain-containing protein
1651	 69.62	0	1715110..1715787	-	225	146277709	-	Rsph17025_1670	-	flagellar hook capping protein
1652	 68.82	0	1715789..1716205	-	138	146277710	-	Rsph17025_1671	-	flagellar basal-body rod protein FlgC
1653	 66.67	0	1716205..1716597	-	130	146277711	-	Rsph17025_1672	-	flagellar basal-body rod protein FlgB
1654	 74.44	+1	1716686..1717495	+	269	146277712	-	Rsph17025_1673	-	hypothetical protein
1655	 68.84	0	1717519..1720191	-	890	146277713	-	Rsph17025_1674	-	multi-sensor hybrid histidine kinase
1656	 68.74	0	1720188..1720718	-	176	146277714	-	Rsph17025_1675	-	hypothetical protein
1657	 63.82	-1	1721001..1721633	+	210	146277715	-	Rsph17025_1676	-	two component LuxR family transcriptional regulator
1658	 69.27	0	1721685..1722338	+	217	146277716	-	Rsph17025_1677	-	hypothetical protein
1659	 63.87	-1	1722375..1722875	-	166	146277717	-	Rsph17025_1678	-	hypothetical protein
1660	 69.43	0	1723053..1723739	+	228	146277718	-	Rsph17025_1679	-	HAD family hydrolase
1661	 69.92	0	1723736..1724689	+	317	146277719	-	Rsph17025_1680	-	DeoR family transcriptional regulator
1662	 66.06	0	1724797..1726107	+	436	146277720	-	Rsph17025_1681	-	extracellular solute-binding protein
1663	 63.69	-1	1726202..1727074	+	290	146277721	-	Rsph17025_1682	-	binding-protein-dependent transport systems inner membrane component
1664	 63.18	-1	1727076..1727906	+	276	146277722	-	Rsph17025_1683	-	binding-protein-dependent transport systems inner membrane component
1665	 66.37	0	1727914..1728912	+	332	146277723	-	Rsph17025_1684	-	ABC transporter related
1666	 69.53	0	1729055..1730488	+	477	146277724	-	Rsph17025_1685	-	mannitol dehydrogenase domain-containing protein
1667	 66.12	0	1730728..1731825	+	365	146277725	-	Rsph17025_1686	-	TRAP dicarboxylate transporter- DctP subunit
1668	 69.20	0	1731994..1733964	-	656	146277726	-	Rsph17025_1687	-	TRAP dicarboxylate transporter, DctM subunit
1669	 61.50	-1	1733961..1734560	-	199	146277727	-	Rsph17025_1688	-	tripartite ATP-independent periplasmic transporter DctQ
1670	 68.48	0	1734944..1735330	+	128	146277728	-	Rsph17025_1689	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1671	 69.74	0	1735327..1735944	+	205	146277729	-	Rsph17025_1690	-	NADH-quinone oxidoreductase, B subunit
1672	 67.07	0	1735941..1737683	+	580	146277730	-	Rsph17025_1691	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1673	 71.94	+1	1737680..1738153	+	157	146277731	-	Rsph17025_1692	-	NADH dehydrogenase subunit E
1674	 72.34	+1	1738150..1739400	+	416	146277732	-	Rsph17025_1693	-	NADH dehydrogenase (quinone)
1675	 74.64	+1	1739397..1741979	+	860	146277733	-	Rsph17025_1694	-	NADH dehydrogenase subunit G
1676	 69.62	0	1742125..1743039	+	304	146277734	-	Rsph17025_1695	-	NADH dehydrogenase (quinone)
1677	 66.06	0	1743036..1743530	+	164	146277735	-	Rsph17025_1696	-	NADH dehydrogenase subunit I
1678	 75.15	+1	1743527..1744021	+	164	146277736	-	Rsph17025_1697	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
1679	 67.31	0	1744018..1744326	+	102	146277737	-	Rsph17025_1698	-	NADH-ubiquinone oxidoreductase, chain 4L
1680	 69.95	0	1744328..1746430	+	700	146277738	-	Rsph17025_1699	-	proton-translocating NADH-quinone oxidoreductase, chain L
68.34	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.