IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1510	 70.80	0	1566820..1567932	-	370	146277568	-	Rsph17025_1528	-	3-dehydroquinate synthase
1511	 70.72	0	1567929..1568471	-	180	146277569	-	Rsph17025_1529	-	shikimate kinase
1512	 73.79	+1	1568784..1570355	+	523	146277570	-	Rsph17025_1530	-	hypothetical protein
1513	 70.94	0	1570355..1571290	+	311	146277571	-	Rsph17025_1531	-	phage integrase family protein
1514	 65.31	0	1571466..1572794	+	442	146277572	-	Rsph17025_1532	-	hypothetical protein
1515	 73.16	+1	1572764..1573903	-	379	146277573	-	Rsph17025_1533	-	hypothetical protein
1516	 71.38	0	1574119..1574394	+	91	146277574	-	Rsph17025_1534	-	hypothetical protein
1517	 67.84	0	1574564..1574905	-	113	146277575	-	Rsph17025_1535	-	hypothetical protein
1518	 69.92	0	1575104..1575934	+	276	146277576	-	Rsph17025_1536	-	peptidase C26
1519	 69.38	0	1575947..1576978	-	343	146277577	-	Rsph17025_1537	-	periplasmic binding protein/LacI transcriptional regulator
1520	 71.48	0	1577082..1577849	-	255	146277578	-	Rsph17025_1538	-	enoyl-CoA hydratase/isomerase
1521	 65.01	0	1577846..1578328	-	160	146277579	-	Rsph17025_1539	-	dehydratase
1522	 70.94	0	1578325..1579119	-	264	146277580	-	Rsph17025_1540	-	2-dehydro-3-deoxyglucarate aldolase
1523	 71.97	+1	1579116..1580642	-	508	146277581	-	Rsph17025_1541	-	coenzyme A transferase
1524	 66.96	0	1580672..1581685	-	337	146277582	-	Rsph17025_1542	-	TRAP dicarboxylate transporter- DctP subunit
1525	 67.27	0	1581708..1582703	-	331	146277583	-	Rsph17025_1543	-	TRAP dicarboxylate transporter- DctP subunit
1526	 67.13	0	1582768..1584066	-	432	146277584	-	Rsph17025_1544	-	TRAP dicarboxylate transporter, DctM subunit
1527	 67.06	0	1584069..1584581	-	170	146277585	-	Rsph17025_1545	-	tripartite ATP-independent periplasmic transporter DctQ
1528	 73.46	+1	1584578..1585342	-	254	146277586	-	Rsph17025_1546	-	enoyl-CoA hydratase/isomerase
1529	 70.68	0	1585339..1587081	-	580	146277587	-	Rsph17025_1547	-	L-aspartate oxidase
1530	 69.82	0	1587078..1588250	-	390	146277588	-	Rsph17025_1548	-	acyl-CoA dehydrogenase domain-containing protein
1531	 69.68	0	1588371..1588868	-	165	146277589	-	Rsph17025_1549	-	TRAP-type mannitol/chloroaromatic compound transport system small permease component-like protein
1532	 66.94	0	1588895..1589986	-	363	146277590	-	Rsph17025_1550	-	TRAP dicarboxylate transporter- DctP subunit
1533	 66.88	0	1590246..1591169	+	307	146277591	-	Rsph17025_1551	-	amidohydrolase 2
1534	 66.89	0	1591237..1592559	+	440	146277592	-	Rsph17025_1552	-	TRAP dicarboxylate transporter, DctM subunit
1535	 71.53	0	1592560..1593525	-	321	146277593	-	Rsph17025_1553	-	hypothetical protein
1536	 70.98	0	1593751..1594515	-	254	146277594	-	Rsph17025_1554	-	short-chain dehydrogenase/reductase SDR
1537	 69.04	0	1594512..1596110	-	532	146277595	-	Rsph17025_1555	-	coenzyme A transferase
1538	 70.17	0	1596285..1596998	+	237	146277596	-	Rsph17025_1556	-	GntR family transcriptional regulator
1539	 65.10	0	1597158..1597667	-	169	146277597	-	Rsph17025_1557	-	CarD family transcriptional regulator
1540	 62.83	-1	1597948..1598286	-	112	146277598	-	Rsph17025_1558	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1541	 72.28	+1	1598341..1598643	-	100	146277599	-	Rsph17025_1559	-	RNA-binding S4 domain-containing protein
1542	 68.76	0	1601507..1602079	-	190	146277600	-	Rsph17025_1561	-	TPR repeat-containing protein
1543	 64.56	-1	1602155..1602439	+	94	146277601	-	Rsph17025_1562	-	sterol-binding domain-containing protein
1544	 71.55	0	1602436..1603398	+	320	146277602	-	Rsph17025_1563	-	alpha/beta hydrolase fold
1545	 65.01	0	1603379..1604104	-	241	146277603	-	Rsph17025_1564	-	20S proteasome, A and B subunits
1546	 72.49	+1	1604137..1604943	-	268	146277604	-	Rsph17025_1565	-	transglutaminase domain-containing protein
1547	 64.77	-1	1604972..1605922	-	316	146277605	-	Rsph17025_1566	-	hypothetical protein
1548	 66.88	0	1605930..1607348	-	472	146277606	-	Rsph17025_1567	-	hypothetical protein
1549	 72.42	+1	1607520..1608596	+	358	146277607	-	Rsph17025_1568	-	exonuclease of the beta-lactamase fold involved in RNA processing-like protein
1550	 70.61	0	1608593..1610191	+	532	146277608	-	Rsph17025_1569	-	ATP-dependent DNA ligase
1551	 66.28	0	1610323..1612143	+	606	146277609	-	Rsph17025_1570	-	pepF/M3 family oligoendopeptidase
1552	 70.04	0	1612231..1613031	+	266	146277610	-	Rsph17025_1571	-	methyltransferase type 12
1553	 64.88	0	1613162..1614058	-	298	146277611	-	Rsph17025_1572	-	RNA polymerase factor sigma-32
1554	 70.67	0	1614221..1615270	-	349	146277612	-	Rsph17025_1573	-	RluA family pseudouridine synthase
1555	 66.98	0	1615269..1615589	+	106	146277613	-	Rsph17025_1574	-	hypothetical protein
1556	 69.43	0	1615641..1617374	+	577	146277614	-	Rsph17025_1575	-	integral membrane sensor hybrid histidine kinase
1557	 78.68	+2	1617399..1617839	-	146	146277615	-	Rsph17025_1576	-	hypothetical protein
1558	 67.94	0	1617927..1618946	+	339	146277616	moaA	Rsph17025_1577	-	molybdenum cofactor biosynthesis protein A
1559	 71.73	0	1618950..1620293	-	447	146277617	-	Rsph17025_1578	-	FAD dependent oxidoreductase
1560	 71.22	0	1620293..1621456	-	387	146277618	-	Rsph17025_1579	-	acetylornithine deacetylase
1561	 68.30	0	1621621..1622904	-	427	146277619	-	Rsph17025_1580	-	hypothetical protein
1562	 66.80	0	1623094..1624542	-	482	146277620	-	Rsph17025_1581	-	NAD(P)(+) transhydrogenase (AB-specific)
1563	 67.30	0	1624553..1626124	-	523	146277621	pntA	Rsph17025_1582	-	NAD(P) transhydrogenase subunit alpha
1564	 70.72	0	1626261..1626704	-	147	146277622	-	Rsph17025_1583	-	S-isoprenylcysteine methyltransferase-like protein
1565	 72.07	+1	1626811..1628013	+	400	146277623	-	Rsph17025_1584	-	kynureninase
1566	 71.50	0	1628291..1629325	+	344	146277624	-	Rsph17025_1585	-	ErfK/YbiS/YcfS/YnhG family protein
1567	 71.00	0	1629417..1630409	+	330	146277625	-	Rsph17025_1586	-	alcohol dehydrogenase
1568	 63.33	-1	1630474..1630833	-	119	146277626	-	Rsph17025_1587	-	PRC-barrel domain-containing protein
1569	 70.24	0	1630923..1631174	-	83	146277627	-	Rsph17025_1588	-	hypothetical protein
1570	 70.34	0	1631250..1631984	-	244	146277628	-	Rsph17025_1589	-	peptidase M48, Ste24p
1571	 65.42	0	1632125..1632364	+	79	146277629	-	Rsph17025_1590	-	hypothetical protein
1572	 68.69	0	1632396..1632989	-	197	146277630	-	Rsph17025_1591	-	flavodoxin/nitric oxide synthase
1573	 75.24	+1	1633132..1634076	+	314	146277631	-	Rsph17025_1592	-	ribokinase-like domain-containing protein
1574	 69.61	0	1634281..1635945	-	554	146277632	nadE	Rsph17025_1593	-	NAD synthetase
1575	 69.46	0	1636127..1637629	+	500	146277633	-	Rsph17025_1594	-	MORN repeat-containing protein
1576	 67.64	0	1637846..1638970	+	374	146277634	-	Rsph17025_1595	-	nitrite reductase, copper-containing
1577	 71.58	0	1639121..1639975	+	284	146277635	-	Rsph17025_1596	-	hypothetical protein
1578	 66.46	0	1640035..1640526	-	163	146277636	-	Rsph17025_1597	-	pseudoazurin
1579	 65.79	0	1640926..1642515	+	529	146277637	-	Rsph17025_1598	-	2-isopropylmalate synthase
1580	 67.29	0	1642573..1643529	-	318	146277638	-	Rsph17025_1599	-	hypothetical protein
1581	 67.34	0	1643852..1644889	+	345	146277639	-	Rsph17025_1600	-	cell shape determining protein MreB
1582	 69.73	0	1644920..1645834	+	304	146277640	-	Rsph17025_1601	-	rod shape-determining protein MreC
1583	 69.26	0	1645827..1646366	+	179	146277641	-	Rsph17025_1602	-	hypothetical protein
1584	 68.93	0	1646363..1648309	+	648	146277642	-	Rsph17025_1603	-	peptidoglycan glycosyltransferase
1585	 66.14	0	1648317..1649456	+	379	146277643	-	Rsph17025_1604	-	rod shape-determining protein RodA
1586	 67.56	0	1649478..1650377	-	299	146277644	-	Rsph17025_1605	-	RpiR family transcriptional regulator
1587	 69.64	0	1650444..1651283	+	279	146277645	-	Rsph17025_1606	-	N-formylglutamate amidohydrolase
1588	 62.13	-1	1651287..1651793	+	168	146277646	-	Rsph17025_1607	-	tripartite ATP-independent periplasmic transporter DctQ
1589	 64.18	-1	1651793..1653118	+	441	146277647	-	Rsph17025_1608	-	TRAP C4-dicarboxylate transport system permease DctM subunit
1590	 65.03	0	1653176..1654213	+	345	146277648	-	Rsph17025_1609	-	TRAP dicarboxylate transporter- DctP subunit
1591	 63.91	-1	1654273..1655652	+	459	146277649	-	Rsph17025_1610	-	glutamate--ammonia ligase
1592	 68.68	0	1655666..1657054	+	462	146277650	-	Rsph17025_1611	-	aldehyde dehydrogenase
1593	 66.49	0	1657051..1658196	+	381	146277651	-	Rsph17025_1612	-	iron-containing alcohol dehydrogenase
1594	 72.45	+1	1658214..1659458	+	414	146277652	-	Rsph17025_1613	-	FAD dependent oxidoreductase
1595	 67.95	0	1659464..1659775	-	103	146277653	-	Rsph17025_1614	-	hypothetical protein
1596	 70.09	0	1659863..1660681	-	272	146277654	-	Rsph17025_1615	-	2,5-didehydrogluconate reductase
1597	 66.81	0	1660752..1661471	-	239	146277655	-	Rsph17025_1616	-	RNA polymerase, sigma 28 subunit, FliA/WhiG
1598	 75.59	+2	1661468..1662487	-	339	146277656	-	Rsph17025_1617	-	hypothetical protein
1599	 70.41	0	1662491..1664599	-	702	146277657	-	Rsph17025_1618	-	flagellar biosynthesis protein FlhA
1600	 72.59	+1	1665004..1665324	+	106	146277658	-	Rsph17025_1619	-	hypothetical protein
1601	 74.37	+1	1665405..1666403	+	332	146277659	-	Rsph17025_1620	-	hypothetical protein
1602	 75.37	+2	1666400..1667077	+	225	146277660	-	Rsph17025_1621	-	flagellar basal body P-ring biosynthesis protein-like protein
1603	 63.67	-1	1667114..1667413	+	99	146277661	-	Rsph17025_1622	-	hypothetical protein
1604	 71.69	0	1667442..1667819	+	125	146277662	-	Rsph17025_1623	-	hypothetical protein
1605	 75.36	+2	1667911..1668531	-	206	146277663	-	Rsph17025_1624	-	Sel1 domain-containing protein
1606	 69.44	0	1668528..1668923	-	131	146277664	-	Rsph17025_1625	-	hypothetical protein
1607	 71.43	0	1669104..1669607	+	167	146277665	-	Rsph17025_1626	-	hypothetical protein
1608	 75.56	+2	1669915..1670229	-	104	146277666	-	Rsph17025_1627	-	hypothetical protein
1609	 67.95	0	1670253..1670642	-	129	146277667	-	Rsph17025_1628	-	flagellin-specific chaperone FliS-like protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.