IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.34   STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
104	 69.06	0	108980..109522	-	180	146276162	-	Rsph17025_0105	-	hypothetical protein
105	 71.20	0	109519..109893	-	124	146276163	-	Rsph17025_0106	-	hypothetical protein
106	 69.86	0	110109..110672	-	187	146276164	-	Rsph17025_0107	-	hypothetical protein
107	 69.67	0	110665..110997	-	110	146276165	-	Rsph17025_0108	-	hypothetical protein
108	 62.54	-1	111019..111648	-	209	146276166	-	Rsph17025_0109	-	hypothetical protein
109	 63.01	-1	111658..112368	-	236	146276167	-	Rsph17025_0110	-	hypothetical protein
110	 70.15	0	112861..113577	-	238	146276168	-	Rsph17025_0111	-	hypothetical protein
111	 69.24	0	113577..114818	-	413	146276169	-	Rsph17025_0112	-	phage integrase family protein
112	 62.34	-1	114970..115431	-	153	146276170	-	Rsph17025_0113	-	hypothetical protein
113	 65.98	0	115782..117083	-	433	146276171	-	Rsph17025_0114	-	HlyD family type I secretion membrane fusion protein
114	 67.53	0	117080..118816	-	578	146276172	-	Rsph17025_0115	-	type I secretion system ATPase
115	 65.14	0	119025..119810	+	261	146276173	-	Rsph17025_0116	-	VacJ family lipoprotein
116	 66.99	0	119800..120423	+	207	146276174	-	Rsph17025_0117	-	toluene tolerance family protein
117	 69.37	0	120533..122899	-	788	146276175	-	Rsph17025_0118	-	1A family penicillin-binding protein
118	 61.06	-2	123062..123400	+	112	146276176	-	Rsph17025_0119	-	nitrogen regulatory protein P-II
119	 65.85	0	123428..124780	+	450	146276177	-	Rsph17025_0120	-	ammonium transporter
120	 66.75	0	124942..126162	-	406	146276178	-	Rsph17025_0121	-	aromatic amino acid aminotransferase
121	 69.49	0	126134..126982	-	282	146276179	-	Rsph17025_0122	-	rhodanese domain-containing protein
122	 62.45	-1	127075..127548	-	157	146276180	smpB	Rsph17025_0123	-	SsrA-binding protein
123	 68.38	0	127678..128550	-	290	146276181	-	Rsph17025_0124	-	dihydrodipicolinate synthase
124	 72.00	+1	128630..130672	+	680	146276182	-	Rsph17025_0125	-	lytic transglycosylase, catalytic
125	 64.67	-1	130812..131261	+	149	146276183	-	Rsph17025_0126	-	hypothetical protein
126	 65.73	0	131258..132427	+	389	146276184	-	Rsph17025_0127	-	ATPase-like protein
127	 66.30	0	132408..132959	-	183	146276185	-	Rsph17025_0128	-	hypothetical protein
128	 65.88	0	133040..133294	+	84	146276186	-	Rsph17025_0129	-	hypothetical protein
129	 71.75	0	133389..133880	+	163	146276187	-	Rsph17025_0130	-	Phage DNA packaging protein Nu1 subunit of terminase-like protein
130	 71.11	0	133867..135645	+	592	146276188	-	Rsph17025_0131	-	phage terminase GpA
131	 61.42	-1	135923..136189	-	88	146276189	-	Rsph17025_0132	-	XRE family transcriptional regulator
132	 63.37	-1	136248..136490	+	80	146276190	-	Rsph17025_0133	-	hypothetical protein
133	 69.44	0	136480..136839	+	119	146276191	-	Rsph17025_0134	-	hypothetical protein
134	 61.33	-2	136934..137458	+	174	146276192	-	Rsph17025_0135	-	hypothetical protein
135	 71.25	0	137455..138786	+	443	146276193	-	Rsph17025_0136	-	lambda family phage portal protein
136	 69.73	0	138783..140543	+	586	146276194	-	Rsph17025_0137	-	peptidase U35, phage prohead HK97
137	 66.21	0	140543..140761	+	72	146276195	-	Rsph17025_0138	-	hypothetical protein
138	 66.97	0	140763..141092	+	109	146276196	-	Rsph17025_0139	-	hypothetical protein
139	 59.66	-2	141340..142467	+	375	146276197	-	Rsph17025_0140	-	phage integrase family protein
140	 72.88	+1	142619..143680	-	353	146276198	-	Rsph17025_0141	-	FAD dependent oxidoreductase
141	 72.29	+1	143735..144463	+	242	146276199	-	Rsph17025_0142	-	hypothetical protein
142	 67.91	0	144460..145344	+	294	146276200	-	Rsph17025_0143	-	hypothetical protein
143	 73.53	+1	145523..149035	+	1170	146276201	-	Rsph17025_0144	-	chromosome segregation protein SMC
144	 61.98	-1	149533..149895	+	120	146276202	-	Rsph17025_0145	-	response regulator receiver protein
145	 66.38	0	150007..150357	+	116	146276203	-	Rsph17025_0146	-	hypothetical protein
146	 67.69	0	150358..151530	-	390	146276204	-	Rsph17025_0147	-	aminotransferase, class I and II
147	 66.48	0	151674..152207	+	177	146276205	-	Rsph17025_0148	-	peptide deformylase
148	 72.36	+1	152207..152698	+	163	146276206	-	Rsph17025_0149	-	peptide deformylase
149	 66.07	0	152695..153198	+	167	146276207	-	Rsph17025_0150	-	peptide deformylase
150	 71.84	+1	153202..154110	+	302	146276208	-	Rsph17025_0151	-	methionyl-tRNA formyltransferase
151	 68.78	0	154168..154404	+	78	146276209	-	Rsph17025_0152	-	hypothetical protein
152	 74.59	+1	154416..154907	-	163	146276210	-	Rsph17025_0153	-	hypothetical protein
153	 67.32	0	154940..155395	-	151	146276211	-	Rsph17025_0154	-	ribonuclease H
154	 73.29	+1	155447..155914	-	155	146276212	-	Rsph17025_0155	-	hypothetical protein
155	 66.06	0	155914..156408	-	164	146276213	-	Rsph17025_0156	-	iojap-like protein
156	 65.74	0	156447..156986	-	179	146276214	-	Rsph17025_0157	-	SOUL heme-binding protein
157	 67.44	0	157230..158648	+	472	146276215	-	Rsph17025_0158	-	isopropylmalate isomerase large subunit
158	 62.21	-1	158712..159317	+	201	146276216	leuD	Rsph17025_0159	-	isopropylmalate isomerase small subunit
159	 66.67	0	159566..160402	+	278	146276217	-	Rsph17025_0160	-	hypothetical protein
160	 66.58	0	161525..162634	+	369	146276218	-	Rsph17025_0162	-	3-isopropylmalate dehydrogenase
161	 67.09	0	162750..163703	+	317	146276219	-	Rsph17025_0163	-	hypothetical protein
162	 66.97	0	164987..165313	-	108	146276220	-	Rsph17025_0164	-	hypothetical protein
163	 64.90	0	165303..165698	-	131	146276221	-	Rsph17025_0165	-	hypothetical protein
164	 64.07	-1	165695..166156	-	153	146276222	-	Rsph17025_0166	-	hypothetical protein
165	 64.03	-1	166192..166911	-	239	146276223	-	Rsph17025_0167	-	hypothetical protein
166	 64.03	-1	167079..167684	-	201	146276224	-	Rsph17025_0168	-	transposase, IS4 family protein
167	 68.31	0	167721..167903	+	60	146276225	-	Rsph17025_0169	-	hypothetical protein
168	 68.08	0	167900..168253	+	117	146276226	-	Rsph17025_0170	-	IS66 Orf2 family protein
169	 68.38	0	168322..169893	+	523	146276227	-	Rsph17025_0171	-	transposase IS66
170	 62.22	-1	170025..170384	-	119	146276228	-	Rsph17025_0172	-	hypothetical protein
171	 63.08	-1	170470..170859	-	129	146276229	-	Rsph17025_0173	-	transposase, IS4 family protein
172	 61.94	-1	170880..171323	-	147	146276230	-	Rsph17025_0174	-	hypothetical protein
173	 62.17	-1	171577..172221	+	214	146276231	-	Rsph17025_0175	-	hypothetical protein
174	 67.13	0	172564..174069	+	501	146276232	-	Rsph17025_0176	-	signal recognition particle protein
175	 68.34	0	174146..174682	+	178	146276233	-	Rsph17025_0177	-	acetyltransferase
176	 72.32	+1	174679..175209	+	176	146276234	-	Rsph17025_0178	-	GCN5-related N-acetyltransferase
177	 71.84	+1	175206..175766	+	186	146276235	-	Rsph17025_0179	-	GCN5-related N-acetyltransferase
178	 61.95	-1	175805..176101	+	98	146276236	-	Rsph17025_0180	-	chorismate mutase
179	 67.24	0	176142..176492	+	116	146276237	rpsP	Rsph17025_0181	-	30S ribosomal protein S16
180	 69.80	0	176590..177099	+	169	146276238	-	Rsph17025_0182	-	16S rRNA processing protein RimM
181	 73.83	+1	177195..178046	+	283	146276239	-	Rsph17025_0183	-	hypothetical protein
182	 68.34	0	178104..178940	+	278	146276240	-	Rsph17025_0184	-	tRNA (guanine-N1)-methyltransferase
183	 63.73	-1	178989..179363	+	124	146276241	rplS	Rsph17025_0185	-	50S ribosomal protein L19
184	 63.51	-1	179376..179597	+	73	146276242	rpmE	Rsph17025_0186	-	50S ribosomal protein L31
185	 66.79	0	179856..180665	+	269	146276243	-	Rsph17025_0187	-	ATPase involved in chromosome partitioning-like protein
186	 66.38	0	180671..181024	-	117	146276244	-	Rsph17025_0188	-	regulatory protein, ArsR
187	 63.69	-1	181232..181567	+	111	146276245	-	Rsph17025_0189	-	hypothetical protein
188	 63.87	-1	181571..182356	+	261	146276246	-	Rsph17025_0190	-	F0F1 ATP synthase subunit A
189	 65.82	0	182408..182644	+	78	146276247	-	Rsph17025_0191	-	F0F1 ATP synthase subunit C
190	 66.67	0	182714..183256	+	180	146276248	-	Rsph17025_0192	-	F0F1 ATP synthase subunit B'
191	 69.19	0	183262..183816	+	184	146276249	-	Rsph17025_0193	-	F0F1 ATP synthase subunit B
192	 66.93	0	183948..184715	-	255	146276250	-	Rsph17025_0194	-	GntR domain-containing protein
193	 70.01	0	184819..185505	-	228	146276251	-	Rsph17025_0195	-	OmpA/MotB domain-containing protein
194	 72.44	+1	185620..186468	-	282	146276252	-	Rsph17025_0196	-	methylated-DNA--protein-cysteine methyltransferase
195	 67.44	0	186581..187225	+	214	146276253	-	Rsph17025_0197	-	endonuclease III
196	 67.88	0	187222..188214	+	330	146276254	-	Rsph17025_0198	-	ribokinase-like domain-containing protein
197	 69.01	0	188376..188759	+	127	146276255	-	Rsph17025_0199	-	histidine triad (HIT) protein
198	 67.56	0	188763..191576	-	937	146276256	-	Rsph17025_0200	-	DNA polymerase I
199	 65.00	0	191624..191803	-	59	146276257	-	Rsph17025_0201	-	hypothetical protein
200	 67.73	0	192094..192657	-	187	146276258	-	Rsph17025_0202	-	hypothetical protein
201	 71.19	0	192740..193756	+	338	146276259	-	Rsph17025_0203	-	ATPase
202	 73.20	+1	193753..194625	+	290	146276260	-	Rsph17025_0204	-	hypothetical protein
203	 72.85	+1	194625..197390	+	921	146276261	-	Rsph17025_0205	-	hypothetical protein
68.34	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.