IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1242	 62.09	-1	1295310..1295615	+	101	146277300	-	Rsph17025_1253	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1243	 70.56	0	1295596..1296135	+	179	146277301	-	Rsph17025_1254	-	NifQ family protein
1244	 63.86	-1	1296303..1296623	+	106	146277302	-	Rsph17025_1255	-	iron-sulfur cluster assembly accessory protein
1245	 72.31	+1	1296633..1297358	+	241	146277303	-	Rsph17025_1256	-	NifU domain-containing protein
1246	 72.08	+1	1297358..1298521	+	387	146277304	-	Rsph17025_1257	-	aminotransferase, class V
1247	 73.49	+1	1298521..1299693	+	390	146277305	-	Rsph17025_1258	-	homocitrate synthase
1248	 66.06	0	1299705..1300031	+	108	146277306	nifW	Rsph17025_1259	-	nitrogenase stabilizing/protective protein
1249	 71.88	+1	1300110..1301414	+	434	146277307	-	Rsph17025_1260	-	RNA polymerase, sigma 54 subunit, RpoN
1250	 66.20	0	1301422..1301853	-	143	146277308	-	Rsph17025_1261	-	hypothetical protein
1251	 66.36	0	1301864..1302523	-	219	146277309	-	Rsph17025_1262	-	Hly-III family protein
1252	 68.53	0	1302674..1303477	+	267	146277310	-	Rsph17025_1263	-	Ku domain-containing protein
1253	 69.82	0	1303687..1304511	+	274	146277311	-	Rsph17025_1264	-	hypothetical protein
1254	 74.34	+1	1304805..1305299	-	164	146277312	-	Rsph17025_1265	-	hypothetical protein
1255	 61.58	-1	1305371..1305547	+	58	146277313	-	Rsph17025_1266	-	hypothetical protein
1256	 65.08	0	1306661..1308745	+	694	146277314	-	Rsph17025_1267	-	hypothetical protein
1257	 66.67	0	1308742..1309401	+	219	146277315	-	Rsph17025_1268	-	hypothetical protein
1258	 70.87	0	1309398..1309778	+	126	146277316	-	Rsph17025_1269	-	hypothetical protein
1259	 69.49	0	1309790..1310179	+	129	146277317	-	Rsph17025_1270	-	hypothetical protein
1260	 72.87	+1	1310339..1312063	-	574	146277318	-	Rsph17025_1271	-	hypothetical protein
1261	 59.85	-2	1313514..1314305	-	263	146277319	-	Rsph17025_1272	-	putative phage repressor
1262	 69.66	0	1314329..1314595	+	88	146277320	-	Rsph17025_1273	-	hypothetical protein
1263	 69.96	0	1314607..1314879	+	90	146277321	-	Rsph17025_1274	-	histone family protein DNA-binding protein
1264	 64.15	-1	1315211..1315567	+	118	146277322	-	Rsph17025_1275	-	hypothetical protein
1265	 68.48	0	1315564..1315839	+	91	146277323	-	Rsph17025_1276	-	hypothetical protein
1266	 72.98	+1	1315839..1316123	+	94	146277324	-	Rsph17025_1277	-	hypothetical protein
1267	 68.17	0	1316125..1316991	+	288	146277325	-	Rsph17025_1278	-	nuclease
1268	 70.16	0	1316988..1319105	+	705	146277326	-	Rsph17025_1279	-	integrase catalytic subunit
1269	 69.48	0	1319150..1319932	+	260	146277327	-	Rsph17025_1280	-	hypothetical protein
1270	 71.13	0	1319935..1320516	+	193	146277328	-	Rsph17025_1281	-	hypothetical protein
1271	 70.34	0	1320513..1320893	+	126	146277329	-	Rsph17025_1282	-	hypothetical protein
1272	 69.05	0	1320890..1321351	+	153	146277330	-	Rsph17025_1283	-	chromosomal replication initiator DnaA domain-containing protein
1273	 66.37	0	1321532..1322194	+	220	146277331	-	Rsph17025_1284	-	hypothetical protein
1274	 62.96	-1	1322169..1322573	-	134	146277332	-	Rsph17025_1285	-	hypothetical protein
1275	 68.49	0	1322633..1323070	+	145	146277333	-	Rsph17025_1286	-	hypothetical protein
1276	 68.27	0	1323067..1323378	+	103	146277334	-	Rsph17025_1287	-	hypothetical protein
1277	 68.98	0	1323375..1323980	+	201	146277335	-	Rsph17025_1288	-	MT-A70 family protein
1278	 72.04	+1	1323977..1324348	+	123	146277336	-	Rsph17025_1289	-	hypothetical protein
1279	 58.45	-2	1324372..1325418	-	348	146277337	-	Rsph17025_1290	-	hypothetical protein
1280	 68.38	0	1325607..1326479	+	290	146277338	-	Rsph17025_1291	-	N-acetylmuramoyl-L-alanine amidase
1281	 70.83	0	1326492..1326923	+	143	146277339	-	Rsph17025_1292	-	hypothetical protein
1282	 66.95	0	1326920..1327270	+	116	146277340	-	Rsph17025_1293	-	hypothetical protein
1283	 70.59	0	1327267..1327572	+	101	146277341	-	Rsph17025_1294	-	hypothetical protein
1284	 65.93	0	1327574..1328113	+	179	146277342	-	Rsph17025_1295	-	hypothetical protein
1285	 65.02	0	1328113..1328778	+	221	146277343	-	Rsph17025_1296	-	hypothetical protein
1286	 69.60	0	1328775..1330205	+	476	146277344	-	Rsph17025_1297	-	hypothetical protein
1287	 73.33	+1	1330205..1330549	+	114	146277345	-	Rsph17025_1298	-	hypothetical protein
1288	 70.04	0	1330551..1332182	+	543	146277346	-	Rsph17025_1299	-	hypothetical protein
1289	 73.15	+1	1332175..1333392	+	405	146277347	-	Rsph17025_1300	-	phage putative head morphogenesis protein, SPP1 gp7
1290	 71.08	0	1333389..1333886	+	165	146277348	-	Rsph17025_1301	-	phage virion morphogenesis protein
1291	 70.21	0	1334000..1335043	+	347	146277349	-	Rsph17025_1302	-	Mu-like prophage I protein-like protein
1292	 73.15	+1	1335043..1335489	+	148	146277350	-	Rsph17025_1303	-	hypothetical protein
1293	 65.55	0	1335501..1336397	+	298	146277351	-	Rsph17025_1304	-	Mu-like prophage major head subunit gpT-like protein
1294	 76.52	+2	1336407..1336802	+	131	146277352	-	Rsph17025_1305	-	hypothetical protein
1295	 71.33	0	1336906..1337334	+	142	146277353	-	Rsph17025_1306	-	hypothetical protein
1296	 73.84	+1	1337334..1337765	+	143	146277354	-	Rsph17025_1307	-	hypothetical protein
1297	 70.42	0	1337907..1338839	+	310	146277355	-	Rsph17025_1308	-	hypothetical protein
1298	 70.30	0	1338859..1339188	+	109	146277356	-	Rsph17025_1309	-	hypothetical protein
1299	 72.22	+1	1339254..1339541	+	95	146277357	-	Rsph17025_1310	-	hypothetical protein
1300	 69.75	0	1339538..1341745	+	735	146277358	-	Rsph17025_1311	-	hypothetical protein
1301	 73.67	+1	1341745..1342401	+	218	146277359	-	Rsph17025_1312	-	hypothetical protein
1302	 73.36	+1	1342406..1343062	+	218	146277360	-	Rsph17025_1313	-	hypothetical protein
1303	 73.04	+1	1343059..1343466	+	135	146277361	-	Rsph17025_1314	-	hypothetical protein
1304	 68.33	0	1343463..1347128	+	1221	146277362	-	Rsph17025_1315	-	hypothetical protein
1305	 65.82	0	1347128..1347721	+	197	146277363	-	Rsph17025_1316	-	hypothetical protein
1306	 74.74	+1	1347772..1349010	+	412	146277364	-	Rsph17025_1317	-	hypothetical protein
1307	 66.07	0	1349019..1349351	+	110	146277365	-	Rsph17025_1318	-	hypothetical protein
1308	 69.04	0	1349351..1350403	+	350	146277366	-	Rsph17025_1319	-	hypothetical protein
1309	 61.25	-2	1350471..1350821	+	116	146277367	-	Rsph17025_1320	-	hypothetical protein
1310	 66.30	0	1351110..1352210	+	366	146277368	-	Rsph17025_1321	-	RNA-directed DNA polymerase (Reverse transcriptase)
1311	 65.48	0	1352483..1352986	+	167	146277369	-	Rsph17025_1322	-	hypothetical protein
1312	 72.75	+1	1353014..1353835	+	273	146277370	-	Rsph17025_1323	-	pyrroline-5-carboxylate reductase
1313	 68.77	0	1353832..1354164	+	110	146277371	-	Rsph17025_1324	-	export-related chaperone CsaA
1314	 70.25	0	1354161..1355108	+	315	146277372	-	Rsph17025_1325	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1315	 64.40	-1	1359635..1360207	+	190	146277373	-	Rsph17025_1327	-	transposase, IS4 family protein
1316	 61.46	-1	1361632..1361823	-	63	146277374	-	Rsph17025_1329	-	hypothetical protein
1317	 66.30	0	1362036..1363112	-	358	146277375	-	Rsph17025_1330	-	spermidine/putrescine-binding periplasmic protein-like protein
1318	 64.45	-1	1363693..1364730	+	345	146277376	-	Rsph17025_1331	-	NAD-dependent epimerase/dehydratase
1319	 71.50	0	1364723..1365715	+	330	146277377	-	Rsph17025_1332	-	UDP-glucose 4-epimerase
1320	 69.64	0	1365699..1367582	+	627	146277378	-	Rsph17025_1333	-	cell wall biosynthesis glycosyltransferase-like protein
1321	 67.21	0	1367586..1368509	+	307	146277379	-	Rsph17025_1334	-	Beta-mannanase-like protein
1322	 69.12	0	1369115..1370254	+	379	146277380	-	Rsph17025_1335	-	acyl-CoA dehydrogenase domain-containing protein
1323	 69.57	0	1370251..1371285	+	344	146277381	-	Rsph17025_1336	-	enoyl-CoA hydratase/isomerase
1324	 70.90	0	1371282..1372154	+	290	146277382	-	Rsph17025_1337	-	3-hydroxyisobutyrate dehydrogenase
1325	 69.03	0	1372342..1373019	+	225	146277383	-	Rsph17025_1338	-	hypothetical protein
1326	 70.86	0	1373132..1374442	-	436	146277384	-	Rsph17025_1339	-	hypothetical protein
1327	 67.65	0	1374439..1375557	-	372	146277385	-	Rsph17025_1340	-	ATPase
1328	 67.54	0	1375868..1377355	+	495	146277386	-	Rsph17025_1341	-	multi-sensor signal transduction histidine kinase
1329	 60.27	-2	1377352..1377789	+	145	146277387	-	Rsph17025_1342	-	response regulator receiver protein
1330	 69.90	0	1377786..1378838	+	350	146277388	-	Rsph17025_1343	-	signal transduction histidine kinase
1331	 63.48	-1	1378921..1380330	-	469	146277389	-	Rsph17025_1344	-	glutamine synthetase, type I
1332	 64.31	-1	1380412..1380750	-	112	146277390	-	Rsph17025_1345	-	nitrogen regulatory protein P-II
1333	 73.46	+1	1382464..1382934	-	156	146277391	-	Rsph17025_1348	-	hypothetical protein
1334	 65.54	0	1383244..1384578	+	444	146277392	tig	Rsph17025_1349	-	trigger factor
1335	 66.14	0	1384781..1385350	-	189	146277393	rplI	Rsph17025_1350	-	50S ribosomal protein L9
1336	 64.04	-1	1385361..1385588	-	75	146277394	rpsR	Rsph17025_1351	-	30S ribosomal protein S18
1337	 64.91	0	1385609..1386007	-	132	146277395	rpsF	Rsph17025_1352	-	30S ribosomal protein S6
1338	 68.07	0	1386543..1386827	+	94	146277396	-	Rsph17025_1353	-	hypothetical protein
1339	 63.55	-1	1386824..1388236	+	470	146277397	-	Rsph17025_1354	-	P4 family phage/plasmid primase
1340	 70.78	0	1388713..1388955	+	80	146277398	-	Rsph17025_1355	-	hypothetical protein
1341	 67.17	0	1389040..1390221	+	393	146277399	-	Rsph17025_1356	-	HK97 family phage portal protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.