IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.34   STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1074	 70.18	0	1109148..1109801	+	217	146277132	-	Rsph17025_1085	-	hypothetical protein
1075	 68.09	0	1109811..1110443	+	210	146277133	-	Rsph17025_1086	-	hypothetical protein
1076	 67.34	0	1110443..1111327	+	294	146277134	-	Rsph17025_1087	-	hypothetical protein
1077	 68.48	0	1111324..1111764	+	146	146277135	-	Rsph17025_1088	-	NlpC/P60 family phage cell wall peptidase
1078	 69.08	0	1111764..1115657	+	1297	146277136	-	Rsph17025_1089	-	hypothetical protein
1079	 70.34	0	1115661..1116095	+	144	146277137	-	Rsph17025_1090	-	hypothetical protein
1080	 66.54	0	1116088..1116894	+	268	146277138	-	Rsph17025_1091	-	serine O-acetyltransferase
1081	 68.72	0	1116972..1118288	-	438	146277139	-	Rsph17025_1092	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1082	 66.59	0	1118299..1119693	-	464	146277140	-	Rsph17025_1093	-	pyruvate dehydrogenase subunit beta
1083	 65.15	0	1119706..1120695	-	329	146277141	-	Rsph17025_1094	-	pyruvate dehydrogenase (acetyl-transferring)
1084	 66.67	0	1120907..1121209	-	100	146277142	-	Rsph17025_1095	-	septum formation initiator
1085	 66.24	0	1121383..1122312	-	309	146277143	-	Rsph17025_1096	-	fructose-bisphosphate aldolase
1086	 69.10	0	1122414..1123607	-	397	146277144	pgk	Rsph17025_1097	-	phosphoglycerate kinase
1087	 64.12	-1	1123756..1124265	+	169	146277145	-	Rsph17025_1098	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1088	 68.35	0	1124255..1124848	+	197	146277146	-	Rsph17025_1099	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1089	 66.97	0	1124899..1125903	-	334	146277147	-	Rsph17025_1100	-	AraC family transcriptional regulator
1090	 68.34	0	1126046..1127416	+	456	146277148	-	Rsph17025_1101	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1091	 73.96	+1	1127480..1128151	-	223	146277149	-	Rsph17025_1102	-	hypothetical protein
1092	 72.28	+1	1128342..1129232	+	296	146277150	-	Rsph17025_1103	-	hypothetical protein
1093	 65.41	0	1129235..1129870	+	211	146277151	-	Rsph17025_1104	-	guanylate kinase
1094	 66.67	0	1129867..1130385	+	172	146277152	-	Rsph17025_1105	-	carbonic anhydrase
1095	 71.18	0	1130542..1131582	+	346	146277153	-	Rsph17025_1106	-	PAS/PAC sensor signal transduction histidine kinase
1096	 69.20	0	1131614..1132561	-	315	146277154	-	Rsph17025_1107	-	inosine/uridine-preferring nucleoside hydrolase
1097	 66.67	0	1132653..1133663	-	336	146277155	-	Rsph17025_1108	-	extracellular solute-binding protein
1098	 69.98	0	1133738..1134553	-	271	146277156	mazG	Rsph17025_1109	-	nucleoside triphosphate pyrophosphohydrolase
1099	 70.44	0	1134705..1135871	+	388	146277157	-	Rsph17025_1110	-	amidohydrolase
1100	 69.36	0	1136021..1136986	+	321	146277158	-	Rsph17025_1111	-	agmatinase
1101	 70.42	0	1136983..1137435	+	150	146277159	-	Rsph17025_1112	-	hypothetical protein
1102	 71.69	0	1137596..1138651	+	351	146277160	-	Rsph17025_1113	-	peptide chain release factor 1
1103	 76.70	+2	1138648..1139484	+	278	146277161	-	Rsph17025_1114	-	HemK family modification methylase
1104	 72.80	+1	1139754..1140503	+	249	146277162	-	Rsph17025_1115	-	hypothetical protein
1105	 71.68	0	1140542..1141378	-	278	146277163	ksgA	Rsph17025_1116	-	dimethyladenosine transferase
1106	 72.03	+1	1141456..1142424	-	322	146277164	pdxA	Rsph17025_1117	-	4-hydroxythreonine-4-phosphate dehydrogenase
1107	 70.36	0	1142421..1143638	-	405	146277165	-	Rsph17025_1118	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1108	 70.17	0	1143742..1145880	-	712	146277166	-	Rsph17025_1119	-	organic solvent tolerance protein
1109	 68.58	0	1145880..1146974	-	364	146277167	-	Rsph17025_1120	-	permease YjgP/YjgQ family protein
1110	 66.31	0	1146971..1148101	-	376	146277168	-	Rsph17025_1121	-	permease YjgP/YjgQ family protein
1111	 69.93	0	1148310..1149779	+	489	146277169	-	Rsph17025_1122	-	leucyl aminopeptidase
1112	 74.63	+1	1149918..1150394	+	158	146277170	-	Rsph17025_1123	-	DNA polymerase III subunit chi
1113	 69.27	0	1150416..1150991	-	191	146277171	-	Rsph17025_1124	-	aspartyl protease-like protein
1114	 69.55	0	1151084..1151707	-	207	146277172	-	Rsph17025_1125	-	multiple antibiotic resistance (MarC)-related protein
1115	 69.00	0	1151711..1153639	-	642	146277173	-	Rsph17025_1126	-	ABC transporter related
1116	 65.01	0	1153687..1154109	+	140	146277174	-	Rsph17025_1127	-	nucleoside-diphosphate kinase
1117	 68.12	0	1154745..1154951	-	68	146277175	-	Rsph17025_1128	-	hypothetical protein
1118	 73.44	+1	1155048..1157570	+	840	146277176	-	Rsph17025_1129	-	heavy metal translocating P-type ATPase
1119	 69.27	0	1157605..1158027	+	140	146277177	-	Rsph17025_1130	-	MerR family transcriptional regulator
1120	 64.14	-1	1158014..1158448	-	144	146277178	-	Rsph17025_1131	-	BadM/Rrf2 family transcriptional regulator
1121	 66.75	0	1158963..1161368	+	801	146277179	-	Rsph17025_1132	-	glycogen/starch/alpha-glucan phosphorylase
1122	 67.68	0	1161381..1163558	+	725	146277180	-	Rsph17025_1133	-	glycogen branching enzyme
1123	 64.78	-1	1163634..1164905	+	423	146277181	glgC	Rsph17025_1134	-	glucose-1-phosphate adenylyltransferase
1124	 70.35	0	1165014..1166450	+	478	146277182	-	Rsph17025_1135	-	glycogen/starch synthase, ADP-glucose type
1125	 69.27	0	1166447..1168561	+	704	146277183	-	Rsph17025_1136	-	glycogen debranching enzyme GlgX
1126	 67.22	0	1168558..1170192	+	544	146277184	-	Rsph17025_1137	-	phosphoglucomutase
1127	 68.72	0	1170372..1171052	+	226	146277185	-	Rsph17025_1138	-	two component LuxR family transcriptional regulator
1128	 71.50	0	1171163..1172341	+	392	146277186	-	Rsph17025_1139	-	hypothetical protein
1129	 69.89	0	1172338..1174539	+	733	146277187	-	Rsph17025_1140	-	PAS/PAC sensor hybrid histidine kinase
1130	 68.72	0	1174646..1175182	+	178	146277188	-	Rsph17025_1141	-	carbon monoxide dehydrogenase subunit G
1131	 64.39	-1	1175211..1175693	+	160	146277189	-	Rsph17025_1142	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
1132	 66.88	0	1175723..1178095	+	790	146277190	-	Rsph17025_1143	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
1133	 71.76	0	1178106..1178891	+	261	146277191	-	Rsph17025_1144	-	molybdopterin dehydrogenase, FAD-binding
1134	 72.64	+1	1179036..1179989	-	317	146277192	-	Rsph17025_1145	-	glucokinase
1135	 69.46	0	1180008..1181330	-	440	146277193	-	Rsph17025_1146	-	Beta-glucosidase
1136	 67.95	0	1181348..1182982	+	544	146277194	-	Rsph17025_1147	-	extracellular solute-binding protein
1137	 64.56	-1	1183131..1184126	+	331	146277195	-	Rsph17025_1148	-	binding-protein-dependent transport systems inner membrane component
1138	 68.63	0	1184126..1185247	+	373	146277196	-	Rsph17025_1149	-	binding-protein-dependent transport systems inner membrane component
1139	 68.63	0	1185278..1186396	+	372	146277197	-	Rsph17025_1150	-	ABC transporter related
1140	 74.87	+1	1186766..1187740	+	324	146277198	-	Rsph17025_1151	-	tellurite resistance protein and related permease-like protein
1141	 69.08	0	1187863..1189311	+	482	146277199	-	Rsph17025_1152	-	inosine-5'-monophosphate dehydrogenase
1142	 70.88	0	1189360..1189929	-	189	146277200	-	Rsph17025_1153	-	TetR family transcriptional regulator
1143	 69.41	0	1190076..1191203	+	375	146277201	-	Rsph17025_1154	-	RND family efflux transporter MFP subunit
1144	 66.37	0	1191211..1194288	+	1025	146277202	-	Rsph17025_1155	-	acriflavin resistance protein
1145	 69.32	0	1194420..1195586	+	388	146277203	-	Rsph17025_1156	-	queuine tRNA-ribosyltransferase
1146	 69.79	0	1195681..1196769	+	362	146277204	-	Rsph17025_1157	-	NADH:flavin oxidoreductase/NADH oxidase
1147	 65.59	0	1197055..1199463	+	802	146277205	-	Rsph17025_1158	-	ATP-dependent protease La
1148	 70.69	0	1199683..1201797	+	704	146277206	-	Rsph17025_1159	-	DNA ligase, NAD-dependent
1149	 72.37	+1	1201794..1203881	+	695	146277207	-	Rsph17025_1160	-	DEAD/DEAH box helicase domain-containing protein
1150	 59.35	-2	1204065..1204187	+	40	146277208	-	Rsph17025_1161	-	hypothetical protein
1151	 71.43	0	1204330..1204770	-	146	146277209	-	Rsph17025_1162	-	NifU-like protein
1152	 68.61	0	1204835..1205194	+	119	146277210	-	Rsph17025_1163	-	phosphoribosyl-AMP cyclohydrolase
1153	 72.68	+1	1205198..1206028	-	276	146277211	-	Rsph17025_1164	-	glutamate--tRNA ligase
1154	 65.92	0	1206013..1207347	-	444	146277212	-	Rsph17025_1165	-	tRNA (uracil-5-)-methyltransferase Gid
1155	 66.81	0	1207351..1210065	-	904	146277213	-	Rsph17025_1166	-	DNA gyrase subunit A
1156	 60.98	-2	1210307..1210570	+	87	146277214	-	Rsph17025_1167	-	Usg family protein
1157	 70.33	0	1210583..1211509	-	308	146277215	-	Rsph17025_1168	-	arginase
1158	 69.15	0	1211751..1213721	+	656	146277216	-	Rsph17025_1169	-	cytochrome c-type biogenesis protein CcmF
1159	 70.61	0	1213718..1214173	+	151	146277217	-	Rsph17025_1170	-	cytochrome C biogenesis protein
1160	 71.30	0	1214238..1215014	+	258	146277218	-	Rsph17025_1171	-	enoyl-CoA hydratase/isomerase
1161	 68.09	0	1215050..1215610	-	186	146277219	ilvH	Rsph17025_1172	-	acetolactate synthase 3 regulatory subunit
1162	 66.61	0	1215693..1217447	-	584	146277220	-	Rsph17025_1173	-	acetolactate synthase 3 catalytic subunit
1163	 66.34	0	1217751..1218665	-	304	146277221	-	Rsph17025_1174	-	CaCA family Na(+)/Ca(+) antiporter
1164	 66.90	0	1218895..1219737	-	280	146277222	-	Rsph17025_1175	-	arginyl-tRNA-protein transferase
1165	 67.77	0	1219840..1220292	-	150	146277223	-	Rsph17025_1176	-	RDD domain-containing protein
1166	 69.59	0	1220368..1220778	-	136	146277224	-	Rsph17025_1177	-	hypothetical protein
1167	 71.78	0	1221018..1223831	+	937	146277225	-	Rsph17025_1178	-	(glutamate--ammonia-ligase) adenylyltransferase
1168	 72.22	+1	1223818..1224087	+	89	146277226	-	Rsph17025_1179	-	hypothetical protein
1169	 74.18	+1	1224107..1224745	-	212	146277227	-	Rsph17025_1180	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
1170	 71.37	0	1225003..1226808	-	601	146277228	-	Rsph17025_1181	-	phosphogluconate dehydratase
1171	 67.35	0	1226971..1227261	-	96	146277229	-	Rsph17025_1182	-	hypothetical protein
1172	 72.35	+1	1227321..1228604	+	427	146277230	-	Rsph17025_1183	-	putative RNA methylase
1173	 74.40	+1	1228601..1229143	+	180	146277231	-	Rsph17025_1184	-	hypothetical protein
68.34	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.