IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1016	 70.43	0	1053928..1055949	-	673	146277074	-	Rsph17025_1027	-	ferredoxin
1017	 67.69	0	1055954..1056928	-	324	146277075	-	Rsph17025_1028	-	methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase
1018	 67.20	0	1056925..1057854	-	309	146277076	-	Rsph17025_1029	-	5 10-methylenetetrahydrofolate reductase-like protein
1019	 69.73	0	1057883..1058176	-	97	146277077	-	Rsph17025_1030	-	hypothetical protein
1020	 68.34	0	1058448..1059584	+	378	146277078	-	Rsph17025_1031	-	Ppx/GppA phosphatase
1021	 67.07	0	1059575..1060066	-	163	146277079	-	Rsph17025_1032	-	hypothetical protein
1022	 65.52	0	1060139..1060312	+	57	146277080	-	Rsph17025_1033	-	hypothetical protein
1023	 65.26	0	1060423..1060989	-	188	146277081	-	Rsph17025_1034	-	hypothetical protein
1024	 69.05	0	1061277..1062911	+	544	146277082	-	Rsph17025_1035	-	peptidoglycan binding domain-containing protein
1025	 71.15	0	1062960..1064051	+	363	146277083	-	Rsph17025_1036	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
1026	 62.17	-1	1064085..1064351	+	88	146277084	-	Rsph17025_1037	-	phosphopantetheine-binding
1027	 66.91	0	1064362..1065570	+	402	146277085	-	Rsph17025_1038	-	beta-ketoacyl synthase
1028	 68.78	0	1065654..1066316	-	220	146277086	-	Rsph17025_1039	-	invasion associated locus B family protein
1029	 68.58	0	1066932..1067663	-	243	146277087	-	Rsph17025_1040	-	MIP family channel protein
1030	 66.98	0	1067826..1068788	+	320	146277088	-	Rsph17025_1041	-	lipoyl synthase
1031	 71.83	+1	1068823..1069713	-	296	146277089	-	Rsph17025_1042	-	gluconate 2-dehydrogenase (acceptor)
1032	 67.75	0	1069717..1070178	-	153	146277090	-	Rsph17025_1043	-	cytochrome c, class II
1033	 64.53	-1	1070517..1071077	-	186	146277091	-	Rsph17025_1044	-	hypoxanthine phosphoribosyltransferase
1034	 64.02	-1	1071154..1071606	+	150	146277092	-	Rsph17025_1045	-	cyclase/dehydrase
1035	 66.49	0	1072276..1073931	+	551	146277093	-	Rsph17025_1046	-	methyl-accepting chemotaxis sensory transducer
1036	 67.10	0	1074021..1075412	-	463	146277094	-	Rsph17025_1047	-	MiaB-like tRNA modifying enzyme YliG
1037	 70.82	0	1075499..1076677	-	392	146277095	-	Rsph17025_1048	-	hypothetical protein
1038	 65.08	0	1076705..1077208	-	167	146277096	-	Rsph17025_1049	-	xanthine-guanine phosphoribosyltransferase
1039	 68.13	0	1077218..1077832	-	204	146277097	-	Rsph17025_1050	-	lysine exporter protein LysE/YggA
1040	 64.73	-1	1077834..1078658	-	274	146277098	-	Rsph17025_1051	-	enoyl-(acyl carrier protein) reductase
1041	 68.33	0	1078800..1079402	+	200	146277099	-	Rsph17025_1052	-	pyridoxamine 5'-phosphate oxidase
1042	 65.75	0	1079518..1080060	+	180	146277100	-	Rsph17025_1053	-	cold-shock DNA-binding domain-containing protein
1043	 69.86	0	1080081..1080518	+	145	146277101	-	Rsph17025_1054	-	hypothetical protein
1044	 75.20	+1	1080545..1081294	-	249	146277102	-	Rsph17025_1055	-	cobalamin 5'-phosphate synthase
1045	 72.66	+1	1081376..1082392	+	338	146277103	-	Rsph17025_1056	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1046	 69.56	0	1082402..1084270	-	622	146277104	-	Rsph17025_1057	-	sodium/hydrogen exchanger
1047	 74.48	+1	1084399..1087305	-	968	146277105	-	Rsph17025_1058	-	hypothetical protein
1048	 72.06	+1	1087469..1088173	+	234	146277106	-	Rsph17025_1059	-	hypothetical protein
1049	 68.21	0	1088222..1089514	-	430	146277107	-	Rsph17025_1060	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1050	 70.57	0	1090019..1090684	-	221	146277108	-	Rsph17025_1061	-	short-chain dehydrogenase/reductase SDR
1051	 66.53	0	1090815..1092275	-	486	146277109	-	Rsph17025_1062	-	amidophosphoribosyltransferase
1052	 68.03	0	1092359..1092943	-	194	146277110	-	Rsph17025_1063	-	colicin V production protein
1053	 70.93	0	1092962..1094320	-	452	146277111	-	Rsph17025_1064	-	DNA repair protein RadA
1054	 67.84	0	1094387..1094812	-	141	146277112	-	Rsph17025_1065	-	paraquat-inducible protein A
1055	 68.14	0	1094814..1095560	-	248	146277113	-	Rsph17025_1066	-	ABC transporter related
1056	 70.63	0	1095557..1096339	-	260	146277114	-	Rsph17025_1067	-	hypothetical protein
1057	 71.62	0	1096336..1097385	-	349	146277115	-	Rsph17025_1068	-	alanine racemase
1058	 68.70	0	1097646..1098383	+	245	146277116	-	Rsph17025_1069	-	3-oxoacyl-(acyl-carrier-protein) reductase
1059	 59.83	-2	1098561..1098794	+	77	146277117	acpP	Rsph17025_1070	-	acyl carrier protein
1060	 69.68	0	1099237..1100499	+	420	146277118	-	Rsph17025_1071	-	3-oxoacyl-(acyl carrier protein) synthase II
1061	 69.97	0	1100499..1101677	+	392	146277119	-	Rsph17025_1072	-	aminodeoxychorismate lyase
1062	 66.67	0	1101752..1102195	+	147	146277120	-	Rsph17025_1073	-	hypothetical protein
1063	 71.97	+1	1102242..1103486	+	414	146277121	-	Rsph17025_1074	-	hypothetical protein
1064	 67.87	0	1103575..1104741	+	388	146277122	-	Rsph17025_1075	-	HK97 family phage portal protein
1065	 67.95	0	1104743..1104976	+	77	146277123	-	Rsph17025_1076	-	hypothetical protein
1066	 68.62	0	1104981..1105544	+	187	146277124	-	Rsph17025_1077	-	HK97 family phage prohead protease
1067	 65.89	0	1105610..1106773	+	387	146277125	-	Rsph17025_1078	-	HK97 family phage major capsid protein
1068	 70.33	0	1106863..1107462	+	199	146277126	-	Rsph17025_1079	-	hypothetical protein
1069	 71.13	0	1107462..1107797	+	111	146277127	-	Rsph17025_1080	-	phage head-tail adaptor, putative
1070	 71.93	+1	1107794..1108192	+	132	146277128	-	Rsph17025_1081	-	hypothetical protein
1071	 66.67	0	1108226..1108639	+	137	146277129	-	Rsph17025_1082	-	TP901-1 family phage major tail protein
1072	 73.27	+1	1108639..1108956	+	105	146277130	-	Rsph17025_1083	-	hypothetical protein
1073	 70.15	0	1108958..1109158	+	66	146277131	-	Rsph17025_1084	-	hypothetical protein
1074	 70.18	0	1109148..1109801	+	217	146277132	-	Rsph17025_1085	-	hypothetical protein
1075	 68.09	0	1109811..1110443	+	210	146277133	-	Rsph17025_1086	-	hypothetical protein
1076	 67.34	0	1110443..1111327	+	294	146277134	-	Rsph17025_1087	-	hypothetical protein
1077	 68.48	0	1111324..1111764	+	146	146277135	-	Rsph17025_1088	-	NlpC/P60 family phage cell wall peptidase
1078	 69.08	0	1111764..1115657	+	1297	146277136	-	Rsph17025_1089	-	hypothetical protein
1079	 70.34	0	1115661..1116095	+	144	146277137	-	Rsph17025_1090	-	hypothetical protein
1080	 66.54	0	1116088..1116894	+	268	146277138	-	Rsph17025_1091	-	serine O-acetyltransferase
1081	 68.72	0	1116972..1118288	-	438	146277139	-	Rsph17025_1092	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1082	 66.59	0	1118299..1119693	-	464	146277140	-	Rsph17025_1093	-	pyruvate dehydrogenase subunit beta
1083	 65.15	0	1119706..1120695	-	329	146277141	-	Rsph17025_1094	-	pyruvate dehydrogenase (acetyl-transferring)
1084	 66.67	0	1120907..1121209	-	100	146277142	-	Rsph17025_1095	-	septum formation initiator
1085	 66.24	0	1121383..1122312	-	309	146277143	-	Rsph17025_1096	-	fructose-bisphosphate aldolase
1086	 69.10	0	1122414..1123607	-	397	146277144	pgk	Rsph17025_1097	-	phosphoglycerate kinase
1087	 64.12	-1	1123756..1124265	+	169	146277145	-	Rsph17025_1098	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1088	 68.35	0	1124255..1124848	+	197	146277146	-	Rsph17025_1099	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1089	 66.97	0	1124899..1125903	-	334	146277147	-	Rsph17025_1100	-	AraC family transcriptional regulator
1090	 68.34	0	1126046..1127416	+	456	146277148	-	Rsph17025_1101	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1091	 73.96	+1	1127480..1128151	-	223	146277149	-	Rsph17025_1102	-	hypothetical protein
1092	 72.28	+1	1128342..1129232	+	296	146277150	-	Rsph17025_1103	-	hypothetical protein
1093	 65.41	0	1129235..1129870	+	211	146277151	-	Rsph17025_1104	-	guanylate kinase
1094	 66.67	0	1129867..1130385	+	172	146277152	-	Rsph17025_1105	-	carbonic anhydrase
1095	 71.18	0	1130542..1131582	+	346	146277153	-	Rsph17025_1106	-	PAS/PAC sensor signal transduction histidine kinase
1096	 69.20	0	1131614..1132561	-	315	146277154	-	Rsph17025_1107	-	inosine/uridine-preferring nucleoside hydrolase
1097	 66.67	0	1132653..1133663	-	336	146277155	-	Rsph17025_1108	-	extracellular solute-binding protein
1098	 69.98	0	1133738..1134553	-	271	146277156	mazG	Rsph17025_1109	-	nucleoside triphosphate pyrophosphohydrolase
1099	 70.44	0	1134705..1135871	+	388	146277157	-	Rsph17025_1110	-	amidohydrolase
1100	 69.36	0	1136021..1136986	+	321	146277158	-	Rsph17025_1111	-	agmatinase
1101	 70.42	0	1136983..1137435	+	150	146277159	-	Rsph17025_1112	-	hypothetical protein
1102	 71.69	0	1137596..1138651	+	351	146277160	-	Rsph17025_1113	-	peptide chain release factor 1
1103	 76.70	+2	1138648..1139484	+	278	146277161	-	Rsph17025_1114	-	HemK family modification methylase
1104	 72.80	+1	1139754..1140503	+	249	146277162	-	Rsph17025_1115	-	hypothetical protein
1105	 71.68	0	1140542..1141378	-	278	146277163	ksgA	Rsph17025_1116	-	dimethyladenosine transferase
1106	 72.03	+1	1141456..1142424	-	322	146277164	pdxA	Rsph17025_1117	-	4-hydroxythreonine-4-phosphate dehydrogenase
1107	 70.36	0	1142421..1143638	-	405	146277165	-	Rsph17025_1118	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1108	 70.17	0	1143742..1145880	-	712	146277166	-	Rsph17025_1119	-	organic solvent tolerance protein
1109	 68.58	0	1145880..1146974	-	364	146277167	-	Rsph17025_1120	-	permease YjgP/YjgQ family protein
1110	 66.31	0	1146971..1148101	-	376	146277168	-	Rsph17025_1121	-	permease YjgP/YjgQ family protein
1111	 69.93	0	1148310..1149779	+	489	146277169	-	Rsph17025_1122	-	leucyl aminopeptidase
1112	 74.63	+1	1149918..1150394	+	158	146277170	-	Rsph17025_1123	-	DNA polymerase III subunit chi
1113	 69.27	0	1150416..1150991	-	191	146277171	-	Rsph17025_1124	-	aspartyl protease-like protein
1114	 69.55	0	1151084..1151707	-	207	146277172	-	Rsph17025_1125	-	multiple antibiotic resistance (MarC)-related protein
1115	 69.00	0	1151711..1153639	-	642	146277173	-	Rsph17025_1126	-	ABC transporter related
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.