IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.34   STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
987	 65.60	0	1021415..1021882	-	155	146277045	-	Rsph17025_0998	-	cytochrome c, class I
988	 67.45	0	1022210..1023100	-	296	146277046	-	Rsph17025_0999	-	hypothetical protein
989	 64.56	-1	1023162..1024253	-	363	146277047	-	Rsph17025_1000	-	magnesium-protoporphyrin IX monomethyl ester cyclase
990	 64.31	-1	1024250..1024546	-	98	146277048	-	Rsph17025_1001	-	hypothetical protein
991	 67.96	0	1024568..1025032	-	154	146277049	-	Rsph17025_1002	-	hypothetical protein
992	 69.64	0	1025097..1025735	-	212	146277050	-	Rsph17025_1003	-	hypothetical protein
993	 65.64	0	1025854..1026636	-	260	146277051	-	Rsph17025_1004	-	photosynthetic reaction center subunit H
994	 69.86	0	1026655..1028094	-	479	146277052	-	Rsph17025_1005	-	PUCC protein
995	 66.07	0	1028091..1028759	-	222	146277053	-	Rsph17025_1006	-	Mg-protoporphyrin IX methyl transferase
996	 65.55	0	1028803..1029696	-	297	146277054	chlL	Rsph17025_1007	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
997	 68.09	0	1029762..1033343	-	1193	146277055	bchH	Rsph17025_1008	-	magnesium chelatase subunit H
998	 67.50	0	1033333..1034901	-	522	146277056	-	Rsph17025_1009	-	light-independent protochlorophyllide reductase subunit B
999	 70.40	0	1034972..1036258	-	428	146277057	-	Rsph17025_1010	-	light-independent protochlorophyllide reductase subunit N
1000	 64.60	-1	1036255..1036737	-	160	146277058	-	Rsph17025_1011	-	2-vinyl bacteriochlorophyllide hydratase
1001	 67.92	0	1037112..1037906	+	264	146277059	-	Rsph17025_1012	-	hypothetical protein
1002	 68.08	0	1037944..1039359	+	471	146277060	-	Rsph17025_1013	-	Fis family transcriptional regulator
1003	 64.67	-1	1039506..1041308	+	600	146277061	-	Rsph17025_1014	-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
1004	 73.75	+1	1041315..1041935	+	206	146277062	-	Rsph17025_1015	-	bacteriochlorophyll 4-vinyl reductase
1005	 68.65	0	1042009..1042917	+	302	146277063	-	Rsph17025_1016	-	bacteriochlorophyll/chlorophyll a synthase
1006	 71.18	0	1042914..1044197	+	427	146277064	-	Rsph17025_1017	-	PUCC protein
1007	 67.26	0	1044200..1045384	+	394	146277065	-	Rsph17025_1018	-	geranylgeranyl reductase
1008	 68.32	0	1045375..1045920	+	181	146277066	-	Rsph17025_1019	-	isopentenyl-diphosphate delta-isomerase, type 1
1009	 71.25	0	1045999..1046871	-	290	146277067	-	Rsph17025_1020	-	alpha/beta hydrolase fold
1010	 75.38	+2	1046874..1048514	-	546	146277068	bchD	Rsph17025_1021	-	magnesium chelatase subunit D
1011	 69.45	0	1048574..1049578	-	334	146277069	bchI	Rsph17025_1022	-	magnesium chelatase subunit I
1012	 67.26	0	1049583..1050587	-	334	146277070	-	Rsph17025_1023	-	hypothetical protein
1013	 67.50	0	1050745..1052301	+	518	146277071	-	Rsph17025_1024	-	phytoene dehydrogenase-related protein
1014	 70.99	0	1052298..1053362	+	354	146277072	-	Rsph17025_1025	-	squalene/phytoene synthase
1015	 66.25	0	1053392..1053871	+	159	146277073	-	Rsph17025_1026	-	TspO and MBR like protein
1016	 70.43	0	1053928..1055949	-	673	146277074	-	Rsph17025_1027	-	ferredoxin
1017	 67.69	0	1055954..1056928	-	324	146277075	-	Rsph17025_1028	-	methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase
1018	 67.20	0	1056925..1057854	-	309	146277076	-	Rsph17025_1029	-	5 10-methylenetetrahydrofolate reductase-like protein
1019	 69.73	0	1057883..1058176	-	97	146277077	-	Rsph17025_1030	-	hypothetical protein
1020	 68.34	0	1058448..1059584	+	378	146277078	-	Rsph17025_1031	-	Ppx/GppA phosphatase
1021	 67.07	0	1059575..1060066	-	163	146277079	-	Rsph17025_1032	-	hypothetical protein
1022	 65.52	0	1060139..1060312	+	57	146277080	-	Rsph17025_1033	-	hypothetical protein
1023	 65.26	0	1060423..1060989	-	188	146277081	-	Rsph17025_1034	-	hypothetical protein
1024	 69.05	0	1061277..1062911	+	544	146277082	-	Rsph17025_1035	-	peptidoglycan binding domain-containing protein
1025	 71.15	0	1062960..1064051	+	363	146277083	-	Rsph17025_1036	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
1026	 62.17	-1	1064085..1064351	+	88	146277084	-	Rsph17025_1037	-	phosphopantetheine-binding
1027	 66.91	0	1064362..1065570	+	402	146277085	-	Rsph17025_1038	-	beta-ketoacyl synthase
1028	 68.78	0	1065654..1066316	-	220	146277086	-	Rsph17025_1039	-	invasion associated locus B family protein
1029	 68.58	0	1066932..1067663	-	243	146277087	-	Rsph17025_1040	-	MIP family channel protein
1030	 66.98	0	1067826..1068788	+	320	146277088	-	Rsph17025_1041	-	lipoyl synthase
1031	 71.83	+1	1068823..1069713	-	296	146277089	-	Rsph17025_1042	-	gluconate 2-dehydrogenase (acceptor)
1032	 67.75	0	1069717..1070178	-	153	146277090	-	Rsph17025_1043	-	cytochrome c, class II
1033	 64.53	-1	1070517..1071077	-	186	146277091	-	Rsph17025_1044	-	hypoxanthine phosphoribosyltransferase
1034	 64.02	-1	1071154..1071606	+	150	146277092	-	Rsph17025_1045	-	cyclase/dehydrase
1035	 66.49	0	1072276..1073931	+	551	146277093	-	Rsph17025_1046	-	methyl-accepting chemotaxis sensory transducer
1036	 67.10	0	1074021..1075412	-	463	146277094	-	Rsph17025_1047	-	MiaB-like tRNA modifying enzyme YliG
1037	 70.82	0	1075499..1076677	-	392	146277095	-	Rsph17025_1048	-	hypothetical protein
1038	 65.08	0	1076705..1077208	-	167	146277096	-	Rsph17025_1049	-	xanthine-guanine phosphoribosyltransferase
1039	 68.13	0	1077218..1077832	-	204	146277097	-	Rsph17025_1050	-	lysine exporter protein LysE/YggA
1040	 64.73	-1	1077834..1078658	-	274	146277098	-	Rsph17025_1051	-	enoyl-(acyl carrier protein) reductase
1041	 68.33	0	1078800..1079402	+	200	146277099	-	Rsph17025_1052	-	pyridoxamine 5'-phosphate oxidase
1042	 65.75	0	1079518..1080060	+	180	146277100	-	Rsph17025_1053	-	cold-shock DNA-binding domain-containing protein
1043	 69.86	0	1080081..1080518	+	145	146277101	-	Rsph17025_1054	-	hypothetical protein
1044	 75.20	+1	1080545..1081294	-	249	146277102	-	Rsph17025_1055	-	cobalamin 5'-phosphate synthase
1045	 72.66	+1	1081376..1082392	+	338	146277103	-	Rsph17025_1056	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1046	 69.56	0	1082402..1084270	-	622	146277104	-	Rsph17025_1057	-	sodium/hydrogen exchanger
1047	 74.48	+1	1084399..1087305	-	968	146277105	-	Rsph17025_1058	-	hypothetical protein
1048	 72.06	+1	1087469..1088173	+	234	146277106	-	Rsph17025_1059	-	hypothetical protein
1049	 68.21	0	1088222..1089514	-	430	146277107	-	Rsph17025_1060	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1050	 70.57	0	1090019..1090684	-	221	146277108	-	Rsph17025_1061	-	short-chain dehydrogenase/reductase SDR
1051	 66.53	0	1090815..1092275	-	486	146277109	-	Rsph17025_1062	-	amidophosphoribosyltransferase
1052	 68.03	0	1092359..1092943	-	194	146277110	-	Rsph17025_1063	-	colicin V production protein
1053	 70.93	0	1092962..1094320	-	452	146277111	-	Rsph17025_1064	-	DNA repair protein RadA
1054	 67.84	0	1094387..1094812	-	141	146277112	-	Rsph17025_1065	-	paraquat-inducible protein A
1055	 68.14	0	1094814..1095560	-	248	146277113	-	Rsph17025_1066	-	ABC transporter related
1056	 70.63	0	1095557..1096339	-	260	146277114	-	Rsph17025_1067	-	hypothetical protein
1057	 71.62	0	1096336..1097385	-	349	146277115	-	Rsph17025_1068	-	alanine racemase
1058	 68.70	0	1097646..1098383	+	245	146277116	-	Rsph17025_1069	-	3-oxoacyl-(acyl-carrier-protein) reductase
1059	 59.83	-2	1098561..1098794	+	77	146277117	acpP	Rsph17025_1070	-	acyl carrier protein
1060	 69.68	0	1099237..1100499	+	420	146277118	-	Rsph17025_1071	-	3-oxoacyl-(acyl carrier protein) synthase II
1061	 69.97	0	1100499..1101677	+	392	146277119	-	Rsph17025_1072	-	aminodeoxychorismate lyase
1062	 66.67	0	1101752..1102195	+	147	146277120	-	Rsph17025_1073	-	hypothetical protein
1063	 71.97	+1	1102242..1103486	+	414	146277121	-	Rsph17025_1074	-	hypothetical protein
1064	 67.87	0	1103575..1104741	+	388	146277122	-	Rsph17025_1075	-	HK97 family phage portal protein
1065	 67.95	0	1104743..1104976	+	77	146277123	-	Rsph17025_1076	-	hypothetical protein
1066	 68.62	0	1104981..1105544	+	187	146277124	-	Rsph17025_1077	-	HK97 family phage prohead protease
1067	 65.89	0	1105610..1106773	+	387	146277125	-	Rsph17025_1078	-	HK97 family phage major capsid protein
1068	 70.33	0	1106863..1107462	+	199	146277126	-	Rsph17025_1079	-	hypothetical protein
1069	 71.13	0	1107462..1107797	+	111	146277127	-	Rsph17025_1080	-	phage head-tail adaptor, putative
1070	 71.93	+1	1107794..1108192	+	132	146277128	-	Rsph17025_1081	-	hypothetical protein
1071	 66.67	0	1108226..1108639	+	137	146277129	-	Rsph17025_1082	-	TP901-1 family phage major tail protein
1072	 73.27	+1	1108639..1108956	+	105	146277130	-	Rsph17025_1083	-	hypothetical protein
1073	 70.15	0	1108958..1109158	+	66	146277131	-	Rsph17025_1084	-	hypothetical protein
1074	 70.18	0	1109148..1109801	+	217	146277132	-	Rsph17025_1085	-	hypothetical protein
1075	 68.09	0	1109811..1110443	+	210	146277133	-	Rsph17025_1086	-	hypothetical protein
1076	 67.34	0	1110443..1111327	+	294	146277134	-	Rsph17025_1087	-	hypothetical protein
1077	 68.48	0	1111324..1111764	+	146	146277135	-	Rsph17025_1088	-	NlpC/P60 family phage cell wall peptidase
1078	 69.08	0	1111764..1115657	+	1297	146277136	-	Rsph17025_1089	-	hypothetical protein
1079	 70.34	0	1115661..1116095	+	144	146277137	-	Rsph17025_1090	-	hypothetical protein
1080	 66.54	0	1116088..1116894	+	268	146277138	-	Rsph17025_1091	-	serine O-acetyltransferase
1081	 68.72	0	1116972..1118288	-	438	146277139	-	Rsph17025_1092	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1082	 66.59	0	1118299..1119693	-	464	146277140	-	Rsph17025_1093	-	pyruvate dehydrogenase subunit beta
1083	 65.15	0	1119706..1120695	-	329	146277141	-	Rsph17025_1094	-	pyruvate dehydrogenase (acetyl-transferring)
1084	 66.67	0	1120907..1121209	-	100	146277142	-	Rsph17025_1095	-	septum formation initiator
1085	 66.24	0	1121383..1122312	-	309	146277143	-	Rsph17025_1096	-	fructose-bisphosphate aldolase
1086	 69.10	0	1122414..1123607	-	397	146277144	pgk	Rsph17025_1097	-	phosphoglycerate kinase
68.34	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.