IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
910	 67.59	0	947087..947953	+	288	77462875	-	RSP_2324	-	RpiR family transcriptional regulator
911	 66.14	0	948123..949262	-	379	77462876	rodA	RSP_2325	-	RodA, rod cell shape determining protein
912	 69.18	0	949270..951216	-	648	77462877	pbpA	RSP_2326	-	peptidoglycan glycosyltransferase
913	 71.30	0	951213..951752	-	179	77462878	-	RSP_2327	-	hypothetical protein
914	 69.44	0	951745..952647	-	300	77462879	mreC	RSP_2328	-	rod shape-determining protein MreC
915	 67.63	0	952681..953718	-	345	77462880	mreB	RSP_2329	-	rod shape-determining protein MreB
916	 66.98	0	954067..955023	+	318	77462881	-	RSP_6044	-	Serine/alanine racemase VanTc3
917	 66.23	0	955210..956799	-	529	77462882	leuA	RSP_2330	-	2-isopropylmalate synthase
918	 67.76	0	957264..957722	+	152	77462883	ppaZ	RSP_2331	-	PpaZ, a novel pseudoazurin precursor (blue copper protein)
919	 69.85	0	958220..959725	-	501	77462884	-	RSP_2332	-	hypothetical protein
920	 69.73	0	959907..961571	+	554	77462885	nadE	RSP_2333	-	NAD synthetase
921	 75.66	+1	961677..962621	-	314	77462886	pfkB	RSP_2334	-	6-phosphofructokinase
922	 69.36	0	962768..963361	+	197	77462887	wrbA	RSP_2335	-	trp repressor binding protein WrbA, putative
923	 65.42	0	963386..963625	-	79	77462888	-	RSP_6045	-	hypothetical protein
924	 70.63	0	963757..964488	+	243	77462889	-	RSP_2336	-	hypothetical protein
925	 71.43	0	964563..964814	+	83	77462890	-	RSP_2337	-	hypothetical protein
926	 66.12	0	964900..965262	+	120	77462891	-	RSP_2338	-	hypothetical protein
927	 63.56	-1	965250..965828	-	192	77462892	-	RSP_2339	-	hypothetical protein
928	 68.34	0	965892..967202	-	436	77462893	-	RSP_2340	-	MiaB-like radical SAM protein
929	 71.84	0	967364..968542	-	392	77462894	-	RSP_2341	-	hypothetical protein
930	 66.47	0	968571..969074	-	167	77462895	gpt	RSP_2342	-	xanthine-guanine phosphoribosyltransferase
931	 68.62	0	969084..969698	-	204	77462896	-	RSP_2343	-	RhtB family threonine efflux protein
932	 65.09	0	969700..970524	-	274	77462897	fabI1	RSP_2344	-	enoyl-(acyl carrier protein) reductase
933	 68.82	0	970667..971269	+	200	77462898	pdxH	RSP_2345	-	pyridoxamine 5'-phosphate oxidase
934	 64.64	0	971386..971928	+	180	77462899	-	RSP_2346	-	cold-shock DNA-binding protein family protein
935	 71.00	0	971943..972404	+	153	77462900	-	RSP_2347	-	hypothetical protein
936	 61.89	-1	973054..973848	-	264	77462901	-	RSP_2348	-	hypothetical protein
937	 68.52	0	973975..974136	-	53	77462902	-	RSP_6223	-	hypothetical protein
938	 64.77	0	974266..974898	-	210	77462903	-	RSP_2349	-	hypothetical protein
939	 69.03	0	974973..975437	-	154	77462904	-	RSP_2350	-	hypothetical protein
940	 67.56	0	976154..978163	-	669	77462905	-	RSP_2351	-	hypothetical protein
941	 68.62	0	978176..979708	-	510	77462906	-	RSP_2352	-	putative terminase large subunit / phage terminase
942	 71.97	0	979786..980181	-	131	77462907	-	RSP_2353	-	hypothetical protein
943	 71.11	0	980178..980492	-	104	77462908	-	RSP_6046	-	hypothetical protein
944	 68.82	0	980495..980911	-	138	77462909	-	RSP_6047	-	hypothetical protein
945	 71.87	0	980904..981326	-	140	77462910	-	RSP_2354	-	hypothetical protein
946	 48.34	-2	981816..983288	+	490	77462911	-	RSP_2356	-	hypothetical protein
947	 66.38	0	983273..983623	-	116	77462912	-	RSP_2355	-	HNH nuclease / phage phi-105 holin-like protein
948	 69.51	0	983626..984222	-	198	77462913	-	RSP_2357	-	hypothetical protein
949	 66.83	0	984222..985484	-	420	77462914	-	RSP_2358	-	phage phi-C31 gp36-like protein /HK97 family  major capsid protein
950	 68.85	0	985754..986074	-	106	77462915	-	RSP_2359	-	hypothetical protein
951	 68.59	0	986071..987264	-	397	77462916	-	RSP_2360	-	head HK97 family portal protein
952	 62.60	-1	987339..989156	-	605	77462917	-	RSP_2361	-	putative integrase/resolvase recombinase protein phage-related integrase
953	 66.79	0	989506..990288	+	260	77462918	-	RSP_2362	-	GntR family transcriptional regulator
954	 71.11	0	990482..991246	+	254	77462919	-	RSP_2363	-	Short-chain dehydrogenase/reductase
955	 65.91	0	991251..991907	+	218	77462920	fucA	RSP_2364	-	L-fuculose phosphate aldolase (class II)
956	 65.32	0	991973..992935	+	320	77462921	-	RSP_2365	-	ABC sugar (ribose) transporter, periplasmic substrate-binding subunit
957	 69.45	0	993119..994627	+	502	77462922	-	RSP_2366	-	ABC sugar (ribose) transporter, fused ATPase subunits
958	 70.15	0	994634..995638	+	334	77462923	-	RSP_2368	-	ABC sugar (ribose) transporter, inner membrane subunit
959	 68.92	0	995642..996619	+	325	77462924	-	RSP_2367	-	ABC sugar (ribose) transporter, inner membrane subunit
960	 69.72	0	996635..997585	+	316	77462925	-	RSP_2370	-	putative sugar kinase
961	 70.28	0	997596..998342	+	248	77462926	-	RSP_2371	-	3-oxoacyl-(acyl-carrier protein) reductase / Short-chain dehydrogenase/reductase SDR
962	 71.04	0	998596..1000014	+	472	77462927	-	RSP_2372	-	aldehyde dehydrogenase (NAD-dependent)
963	 74.53	+1	1000011..1001180	+	389	77462928	-	RSP_2373	-	MFS family transporter
964	 71.62	0	1001413..1001937	+	174	77462929	-	RSP_2374	-	hypothetical protein
965	 71.92	0	1002024..1003469	+	481	77462930	-	RSP_2375	-	hypothetical protein
966	 69.77	0	1003514..1004704	+	396	77462931	kbl	RSP_2376	-	2-amino-3-ketobutyrate coenzyme A ligase
967	 67.74	0	1004704..1005729	+	341	77462932	tdh	RSP_2377	-	L-threonine 3-dehydrogenase
968	 70.22	0	1005921..1007243	-	440	77462933	cypC	RSP_2378	-	putative fatty acid beta hydroxylase (cytochrome P450)
969	 70.59	0	1007354..1007608	-	84	77462934	-	RSP_2379	-	hypothetical protein
970	 66.20	0	1007644..1009776	-	710	77462935	catC	RSP_2380	-	catalase
971	 68.56	0	1009898..1010425	-	175	77462936	-	RSP_6048	-	hypothetical protein
972	 72.25	0	1010544..1011098	+	184	77462937	-	RSP_2381	-	3-methyladenine DNA glycosylase
973	 67.90	0	1011171..1011332	+	53	77462938	-	RSP_6049	-	hypothetical protein
974	 70.00	0	1011405..1012514	-	369	77462939	-	RSP_2382	-	hypothetical protein
975	 69.65	0	1012514..1012915	-	133	77462940	-	RSP_2383	-	putative integral membrane protein
976	 72.61	0	1012902..1013726	-	274	77462941	-	RSP_6050	-	hypothetical protein
977	 64.17	-1	1013866..1014426	+	186	77462942	-	RSP_2384	-	hypothetical protein
978	 68.60	0	1014506..1014868	-	120	77462943	-	RSP_2385	-	hypothetical protein
979	 64.30	-1	1015271..1015651	+	126	77462944	-	RSP_6224	-	hypothetical protein
980	 70.68	0	1015654..1016748	-	364	77462945	mtnA	RSP_2386	-	methylthioribose-1-phosphate isomerase
981	 69.66	0	1016860..1017294	-	144	77462946	-	RSP_2387	-	hypothetical protein
982	 69.86	0	1017366..1017866	-	166	77462947	-	RSP_2388	-	hypothetical protein
983	 69.11	0	1018151..1018681	+	176	77462948	-	RSP_2389	-	putative glutathione peroxidase
984	 74.41	+1	1018710..1019819	+	369	77462949	acuC1	RSP_2390	-	putative acetoin utilization protein
985	 74.41	+1	1019816..1020370	+	184	77462950	-	RSP_2391	-	2'-5' RNA ligase
986	 65.41	0	1020381..1020938	-	185	77462951	-	RSP_2392	-	putative membrane protein, periplasmic nitrate reductase NnuR
987	 75.00	+1	1021231..1022454	-	407	77462952	kdtA	RSP_2394	-	putative 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
988	 68.77	0	1022619..1023662	+	347	77462953	-	RSP_2395	-	BCCP, cytochrome c peroxidase
989	 70.06	0	1023737..1024738	-	333	77462954	-	RSP_2396	-	hypothetical protein
990	 65.10	0	1025030..1026049	-	339	77462955	-	RSP_2397	-	ABC putrescine transporter, periplasmic substrate-binding subunit
991	 66.54	0	1026077..1026877	-	266	77462956	-	RSP_2398	-	ABC putrescine transporter, inner membrane subunit
992	 65.77	0	1026870..1027763	-	297	77462957	-	RSP_2399	-	ABC putrescine transporter, inner membrane subunit
993	 72.44	0	1027765..1028769	-	334	77462958	-	RSP_2400	-	ABC putrescine transporter, ATPase subunit
994	 74.07	+1	1028860..1030317	-	485	77462959	-	RSP_2401	-	putative 6-aminohexanoate-cyclic-dimer hydrolase
995	 69.50	0	1030777..1032612	+	611	77462960	-	RSP_2402	-	putative TonB dependent vitamin B12 outer membrane receptor
996	 71.54	0	1032599..1033459	+	286	77462961	-	RSP_2403	-	ABC cobalamin/Fe3+-siderophore transporter, periplasmic substrate-binding subunit
997	 72.12	0	1033456..1034445	+	329	77462962	-	RSP_2404	-	ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit
998	 74.10	+1	1034442..1035194	+	250	77462963	-	RSP_2405	-	ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit
999	 75.76	+1	1035191..1035850	+	219	77462964	-	RSP_2406	-	hypothetical protein
1000	 71.51	0	1035995..1037728	-	577	77462965	-	RSP_2407	-	periplasmic sensor hybrid histidine kinase
1001	 70.73	0	1037772..1038017	-	81	77462966	-	RSP_2408	-	hypothetical protein
1002	 71.33	0	1038091..1039140	+	349	77462967	rluD	RSP_2409	-	ribosomal large subunit pseudouridine synthase D
1003	 66.11	0	1039301..1040197	+	298	77462968	rpoH1	RSP_2410	-	RNA polymerase factor sigma-32
1004	 70.79	0	1040755..1041555	-	266	77462969	-	RSP_2411	-	hypothetical protein
1005	 66.06	0	1041640..1043460	-	606	77462970	pepF	RSP_2412	-	oligoendopeptidase F
1006	 70.35	0	1043632..1045233	-	533	77462971	lig2	RSP_2413	-	ATP-dependent DNA ligase
1007	 71.88	0	1045230..1046381	-	383	77462972	-	RSP_2414	-	hypothetical protein
1008	 66.24	0	1046578..1047969	+	463	77462973	-	RSP_2415	-	hypothetical protein
1009	 65.93	0	1047977..1048927	+	316	77462974	-	RSP_2416	-	hypothetical protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.