IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
816	 68.17	0	844096..844626	-	176	77462781	-	RSP_2228	-	PAS domain-containing protein
817	 67.81	0	844698..848210	+	1170	77462782	-	RSP_2229	-	methylesterase CheB/methylase CheR
818	 68.57	0	848230..848544	+	104	77462783	-	RSP_2230	-	response regulator receiver domain-containing protein
819	 65.88	0	848771..849025	+	84	77462784	-	RSP_2231	-	hypothetical protein
820	 72.00	0	849420..850844	-	474	77462785	-	RSP_2232	-	putative uracil-DNA glycosylase
821	 67.65	0	850877..852097	-	406	77462786	-	RSP_2234	-	DNA-binding protein
822	 73.29	+1	852180..853220	-	346	77462787	-	RSP_2235	-	hypothetical protein
823	 69.23	0	853322..853789	+	155	77462788	-	RSP_2236	-	MarR family transcriptional regulator
824	 71.64	0	853786..854892	+	368	77462789	-	RSP_2237	-	membrane fusion protein (MFP) family protein
825	 66.99	0	854906..856429	+	507	77462790	-	RSP_2238	-	major facilitator superfamily multidrug-efflux transporter
826	 70.74	0	857218..858003	+	261	77462791	-	RSP_2239	-	tRNA/rRNA metyltransferase
827	 70.02	0	858192..858638	+	148	77462792	-	RSP_2240	-	hypothetical protein
828	 70.51	0	858840..859151	-	103	77462793	hisE	RSP_2241	-	phosphoribosyl-ATP pyrophosphatase
829	 69.95	0	859148..859909	-	253	77462794	hisF	RSP_2242	-	imidazole glycerol phosphate synthase subunit HisF
830	 73.19	+1	860044..860763	-	239	77462795	hisA	RSP_2243	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
831	 70.87	0	860903..861283	+	126	77462796	-	RSP_2244	-	hypothetical protein
832	 68.70	0	861508..862146	-	212	77462797	hisH	RSP_2245	-	imidazole glycerol phosphate synthase subunit HisH
833	 68.03	0	862146..862733	-	195	77462798	hisB	RSP_2246	-	imidazoleglycerol-phosphate dehydratase
834	 69.60	0	862970..864979	+	669	77462799	fusA	RSP_2247	-	elongation factor G
835	 71.33	0	865112..866332	-	406	77462800	-	RSP_2249	-	major facilitator superfamily multidrug-efflux transporter
836	 72.84	0	866363..867091	-	242	77462801	-	RSP_2250	-	hypothetical protein
837	 70.72	0	867084..867872	-	262	77462802	-	RSP_2251	-	3-oxoadipate enol-lactonase
838	 74.85	+1	868100..869077	-	325	77462803	-	RSP_2252	-	L-threonine ammonia-lyase
839	 71.76	0	869074..869898	-	274	77462804	-	RSP_2253	-	hydrolase or acyltransferase
840	 69.55	0	870307..872043	+	578	77462805	-	RSP_2254	-	ABC efflux transporter, fused ATPase and inner membrane subunits
841	 68.20	0	872149..874038	+	629	77462806	-	RSP_2255	-	acyl-CoA synthetase
842	 71.92	0	874411..874848	-	145	77462807	dtd	RSP_2256	-	D-tyrosyl-tRNA deacylase
843	 73.29	+1	874848..875768	-	306	77462808	-	RSP_2257	-	putative fructokinase
844	 68.65	0	875782..876741	-	319	77462809	hemH	RSP_2258	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
845	 74.89	+1	876808..877245	-	145	77462810	-	RSP_2259	-	transmembrane protein
846	 72.50	0	877250..878347	-	365	77462811	ydjG	RSP_2260	-	hypothetical protein
847	 69.01	0	878349..879458	-	369	77462812	ydjI	RSP_2261	-	antifreeze protein, type I
848	 66.35	0	879639..880277	-	212	77462813	-	RSP_2262	-	hypothetical protein
849	 70.39	0	880293..881258	-	321	77462814	-	RSP_2263	-	hypothetical protein
850	 69.19	0	881271..882461	-	396	77462815	telA	RSP_2264	-	tellurite resistance protein
851	 72.92	0	882610..883488	-	292	77462816	-	RSP_2265	-	hypothetical protein
852	 75.77	+1	883673..885199	-	508	77462817	rluB	RSP_2266	-	pseudouridine synthase,
853	 75.06	+1	885533..885985	+	150	77462818	-	RSP_2267	-	hypothetical protein
854	 66.09	0	885996..886688	-	230	77462819	-	RSP_2268	-	metallo beta lactamase superfamily protein
855	 73.06	+1	886751..887407	+	218	77462820	-	RSP_6222	-	hypothetical protein
856	 67.36	0	887451..887738	+	95	77462821	gatC	RSP_6043	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
857	 69.04	0	887735..889210	+	491	77462822	gatA	RSP_2270	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
858	 71.16	0	889158..890048	+	296	77462823	-	RSP_2271	-	hypothetical protein
859	 73.96	+1	890052..890723	+	223	77462824	ampD	RSP_2272	-	N-acetylmuramoyl-L-alanine amidase
860	 70.56	0	891211..892443	-	410	77462825	-	RSP_2273	-	putative anaerobic phenylacetate CoA ligase
861	 66.06	0	892440..893270	-	276	77462826	-	RSP_2274	-	branched chain amino acid ABC transporter ATPase
862	 66.98	0	893357..894646	-	429	77462827	-	RSP_2275	-	branched chain amino acid ABC transporter periplasmic substrate-binding protein
863	 64.90	0	894707..895783	-	358	77462828	-	RSP_2276	-	branched chain amino acid ABC transporter inner membrane protein
864	 65.86	0	895787..896776	-	329	77462829	-	RSP_2277	-	branched chain amino acid ABC transporter inner membrane protein
865	 64.40	-1	896911..897750	-	279	77462830	-	RSP_2278	-	branched chain amino acid ABC transporter ATPase
866	 66.16	0	898039..900000	-	653	77462831	-	RSP_2279	-	long chain acyl-CoA synthetase
867	 72.33	0	900561..902483	+	640	77462832	-	RSP_2280	-	PAS sensor hybrid histidine kinase
868	 70.76	0	902480..903187	+	235	77462833	-	RSP_2281	-	two-component transcriptional regulator
869	 75.57	+1	903198..904376	-	392	77462834	chrA	RSP_2282	-	chromate efflux pump, ChrA
870	 63.77	-1	904801..905421	+	206	77462835	rpsD	RSP_2283	-	30S ribosomal protein S4
871	 68.23	0	905665..906750	+	361	77462836	-	RSP_2284	-	histidinol-phosphate aminotransferase
872	 69.12	0	906750..907685	+	311	77462837	-	RSP_6215	-	cyclohexadienyl dehydrogenase
873	 72.49	0	907691..908548	+	285	77462838	-	RSP_2285	-	hypothetical protein
874	 72.59	0	908551..909546	-	331	77462839	-	RSP_2286	-	hypothetical protein
875	 68.12	0	909607..910155	+	182	77462840	-	RSP_2287	-	ChaC-like protein
876	 69.13	0	910229..911404	+	391	77462841	-	RSP_2288	-	hypothetical protein
877	 71.55	0	911408..912985	+	525	77462842	-	RSP_2289	-	hypothetical protein
878	 70.46	0	913317..913817	+	166	77462843	-	RSP_2291	-	hypothetical protein
879	 65.67	0	914730..917045	-	771	77462844	clpA	RSP_2293	-	chaperonin clpA/B
880	 66.80	0	917212..917979	-	255	77462845	gloB	RSP_2294	-	putative hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II) protein
881	 70.22	0	918041..918829	+	262	77462846	-	RSP_2295	-	hypothetical protein
882	 66.67	0	919132..919692	+	186	77462847	atpH	RSP_2296	-	ATPase, delta (OSCP) subunit
883	 66.15	0	919693..921231	+	512	77462848	atpA	RSP_2297	-	F0F1 ATP synthase subunit alpha
884	 66.67	0	921254..922123	+	289	77462849	atpG	RSP_2298	-	F0F1 ATP synthase subunit gamma
885	 66.25	0	922141..923568	+	475	77462850	atpD	RSP_2299	-	F0F1 ATP synthase subunit beta
886	 69.92	0	923578..923976	+	132	77462851	atpC	RSP_2300	-	F0F1 ATP synthase subunit epsilon
887	 64.12	-1	924402..925421	-	339	77462852	prsA	RSP_2301	-	phosphoribosyl pyrophosphate synthetase
888	 73.10	+1	925553..926578	-	341	77462853	-	RSP_2302	-	L-threonine aldolase
889	 65.58	0	926578..927039	-	153	77462854	-	RSP_2303	-	hypothetical protein
890	 70.36	0	927079..927999	-	306	77462855	ribF	RSP_2304	-	FMN adenylyltransferase / riboflavin kinase
891	 65.77	0	928027..928470	-	147	77462856	-	RSP_2305	-	MaoC family protein
892	 68.34	0	928696..929589	-	297	77462857	-	RSP_2306	-	putative HAD superfamily protein
893	 65.36	0	929740..930657	-	305	77462858	-	RSP_2307	-	putative manganese-dependent inorganic pyrophosphatase
894	 71.03	0	930778..931029	+	83	77462859	-	RSP_2308	-	hypothetical protein
895	 70.74	0	931046..932101	-	351	77462860	-	RSP_2309	-	hypothetical protein
896	 61.81	-1	932218..932505	+	95	77462861	groES	RSP_2310	-	co-chaperonin GroES
897	 65.02	0	932601..934244	+	547	77462862	groEL	RSP_2311	-	chaperonin GroEL
898	 72.92	0	934513..935088	-	191	77462863	-	RSP_2312	-	hypothetical protein
899	 69.00	0	935222..936208	+	328	77462864	-	RSP_2313	-	2-hydroxyacid dehydrogenase
900	 70.33	0	936536..937354	+	272	77462865	-	RSP_2314	-	oxidoreductase, chromogranin/secretogranin
901	 66.67	0	937445..937750	+	101	77462866	-	RSP_2315	-	hypothetical protein
902	 72.14	0	937932..939173	-	413	77462867	dadA	RSP_2316	-	D-amino acid dehydrogenase
903	 67.19	0	939220..940365	-	381	77462868	-	RSP_2317	-	Iron-containing alcohol dehydrogenase
904	 68.03	0	940362..941750	-	462	77462869	-	RSP_2318	-	putative aldehyde dehydrogenase
905	 65.00	0	941763..943142	-	459	77462870	glnA	RSP_2319	-	L-glutamine synthetase
906	 64.35	-1	943218..944255	-	345	77462871	-	RSP_2320	-	TRAP-T family transporter periplasmic binding protein
907	 66.14	0	944312..945637	-	441	77462872	-	RSP_2321	-	TRAP-T family transporter
908	 62.13	-1	945637..946143	-	168	77462873	-	RSP_2322	-	TRAP dicarboxylate family transporter DctQ subunit
909	 69.54	0	946148..946912	-	254	77462874	-	RSP_2323	-	hypothetical protein
910	 67.59	0	947087..947953	+	288	77462875	-	RSP_2324	-	RpiR family transcriptional regulator
911	 66.14	0	948123..949262	-	379	77462876	rodA	RSP_2325	-	RodA, rod cell shape determining protein
912	 69.18	0	949270..951216	-	648	77462877	pbpA	RSP_2326	-	peptidoglycan glycosyltransferase
913	 71.30	0	951213..951752	-	179	77462878	-	RSP_2327	-	hypothetical protein
914	 69.44	0	951745..952647	-	300	77462879	mreC	RSP_2328	-	rod shape-determining protein MreC
915	 67.63	0	952681..953718	-	345	77462880	mreB	RSP_2329	-	rod shape-determining protein MreB
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.