IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
709	 72.82	0	723994..725082	+	362	77462674	-	RSP_2123	-	radical SAM domain-containing protein
710	 71.43	0	725180..726187	-	335	77462675	-	RSP_2124	-	methionine synthase I
711	 67.29	0	726399..726719	-	106	77462676	-	RSP_2125	-	hypothetical protein
712	 66.53	0	726902..727654	+	250	77462677	purC	RSP_2126	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
713	 63.75	-1	727669..727908	+	79	77462678	purS	RSP_2127	-	component of phosphoribosylformylglycinamidine (FGAM) synthetase
714	 70.85	0	728140..728808	+	222	77462679	purQ	RSP_2128	-	phosphoribosylformylglycinamidine synthase I (FGAM) synthase
715	 68.14	0	728856..730619	+	587	77462680	-	RSP_2129	-	sensor histidine kinase
716	 66.37	0	730629..731957	+	442	77462681	-	RSP_2130	-	two component, sigma54 specific, Fis family transcriptional regulator
717	 69.65	0	732464..735274	+	936	77462682	rne	RSP_2131	-	RNAse E
718	 72.81	0	735283..735510	-	75	77462683	-	RSP_2132	-	hypothetical protein
719	 68.01	0	735655..736401	+	248	77462684	ccdA	RSP_2134	-	putative cytochrome c-type biogenesis protein CcdA
720	 75.14	+1	736430..737644	+	404	77462685	-	RSP_2136	-	hypothetical protein
721	 72.07	0	737626..737847	-	73	77462686	-	RSP_2135	-	hypothetical protein
722	 73.04	+1	737844..738047	-	67	77462687	-	RSP_2137	-	hypothetical protein
723	 65.52	0	738047..739441	-	464	77462688	fumC	RSP_2138	-	fumarate hydratase
724	 66.45	0	739608..740066	-	152	77462689	-	RSP_2139	-	hypothetical protein
725	 74.58	+1	740169..740825	-	218	77462690	-	RSP_2140	-	hypothetical protein
726	 66.28	0	741747..742793	-	348	77462691	-	RSP_2141	-	ABC polyamine transporter, periplasmic substrate-binding protein
727	 71.43	0	743132..744370	+	412	77462692	-	RSP_2142	-	NifS-related protein
728	 72.18	0	744522..745937	+	471	77462693	-	RSP_2143	-	deoxyribodipyrimidine photo-lyase type I
729	 66.58	0	745971..747182	+	403	77462694	cfaS	RSP_2144	-	cyclopropane-fatty-acyl-phospholipid synthase
730	 70.98	0	747208..747648	+	146	77462695	trgA	RSP_2145	-	tellurite resistance protein
731	 74.22	+1	747648..748733	+	361	77462696	trgB	RSP_2146	-	tellurite resistance protein
732	 68.31	0	749066..750100	+	344	77462697	cysK	RSP_2147	-	cysteine synthase A
733	 70.32	0	750104..752647	+	847	77462698	-	RSP_2148	-	small conductance mechanosensitive Ion channel
734	 71.67	0	752647..753366	+	239	77462699	-	RSP_2149	-	Ala-tRNA(Pro) hydrolase
735	 74.37	+1	753492..754205	-	237	77462700	-	RSP_2150	-	glycosyl transferase
736	 73.91	+1	754202..754753	-	183	77462701	yohD	RSP_2151	-	DedA family, membrane protein
737	 75.02	+1	754750..755838	-	362	77462702	-	RSP_2152	-	ceramide glucosyltransferase
738	 71.00	0	755838..756644	-	268	77462703	-	RSP_2153	-	metallo-phosphoesterase
739	 71.89	0	756778..758079	-	433	77462704	-	RSP_2154	-	hypothetical protein
740	 71.57	0	758081..759406	-	441	77462705	hisD	RSP_2155	-	histidinol dehydrogenase
741	 66.17	0	759416..760213	-	265	77462706	-	RSP_2156	-	ABC transporter, inner membrane subunit
742	 70.09	0	760210..761145	-	311	77462707	-	RSP_2157	-	ABC transporter, inner membrane subunit
743	 67.94	0	761705..762802	-	365	77462708	-	RSP_2158	-	ABC transporter, periplasmic solute-binding protein
744	 71.52	0	762822..763955	-	377	77462709	-	RSP_2159	-	ABC transporter, ATPase subunit
745	 71.63	0	764032..764796	-	254	77462710	gno	RSP_2160	-	Short-chain dehydrogenase/reductase
746	 68.22	0	764992..765699	-	235	77462711	bcrC	RSP_2161	-	efflux channel
747	 68.28	0	765995..766798	+	267	77462712	-	RSP_2163	-	lytic murein transglycosylase, putative
748	 67.98	0	767169..767624	-	151	77462713	putR	RSP_2165	-	AsnC family transcriptional regulator
749	 73.23	+1	767735..771376	+	1213	77462714	putA	RSP_2166	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
750	 66.67	0	771407..772147	+	246	77462715	-	RSP_2167	-	hypothetical protein
751	 68.91	0	772144..772500	+	118	77462716	-	RSP_2168	-	hypothetical protein
752	 70.48	0	772736..773521	-	261	77462717	suhB	RSP_2169	-	inositol monophosphatase family protein
753	 70.22	0	773653..775170	-	505	77462718	-	RSP_2170	-	inorganic phosphate transporter
754	 67.00	0	775298..776203	-	301	77462719	metR	RSP_2171	-	LysR family transcriptional regulator
755	 68.28	0	776298..777164	+	288	77462720	metF	RSP_2172	-	5,10-methylenetetrahydrofolate reductase
756	 72.89	0	777316..777861	-	181	77462721	-	RSP_2173	-	hypothetical protein
757	 73.94	+1	777875..778465	-	196	77462722	-	RSP_2174	-	ABC transporter inner membrane protein
758	 71.39	0	778440..779180	-	246	77462723	-	RSP_2175	-	ABC transporter, ATPase subunit
759	 71.88	0	779483..780058	-	191	77462724	gabT	RSP_2176C	-	aminotransferase
760	 68.09	0	780055..780759	-	234	77462725	gabT	RSP_2176N	-	aminotransferase
761	 76.23	+1	781012..782130	+	372	77462726	-	RSP_2177	-	hypothetical protein
762	 68.21	0	782378..785032	+	884	77462727	topA	RSP_2178	-	DNA topoisomerase I
763	 69.78	0	785081..786109	-	342	77462728	proV	RSP_2179	-	ABC glycine betaine/L-proline tranporter, ATPase subunit, ProV
764	 65.03	0	786106..786960	-	284	77462729	proW	RSP_2180	-	ABC glycine betaine/L-proline transporter, inner membrane subunit
765	 64.72	0	787065..787991	-	308	77462730	proX	RSP_2181	-	ABC glycine betaine/L-proline transporter, periplasmic substrate-binding subunit
766	 68.21	0	788078..788662	+	194	77462731	betI	RSP_2182	-	transcriptional regulator BetI
767	 71.14	0	788659..790110	+	483	77462732	betB	RSP_2183	-	betaine aldehyde dehydrogenase
768	 69.28	0	790120..791766	+	548	77462733	betA	RSP_2184	-	choline dehydrogenase
769	 73.72	+1	791845..792525	+	226	77462734	-	RSP_2185	-	nuclease (SNase-like)
770	 70.27	0	792833..794218	-	461	77462735	-	RSP_2186	-	MerR family transcriptional regulator
771	 68.55	0	794280..795500	-	406	77462736	-	RSP_2187	-	major facilitator superfamily multidrug-efflux transporter
772	 59.32	-2	795537..795890	-	117	77462737	-	RSP_2188	-	hypothetical protein
773	 64.91	0	796019..797551	+	510	77462738	pccB	RSP_2189	-	propionyl-CoA carboxylase beta chain
774	 67.53	0	797703..798050	+	115	77462739	-	RSP_6040	-	hypothetical protein
775	 70.18	0	798472..798870	+	132	77462740	-	RSP_2190	-	hypothetical protein
776	 72.37	0	799185..799412	+	75	77462741	-	RSP_6221	-	hypothetical protein
777	 66.43	0	799508..801595	+	695	77462742	pccA	RSP_2191	-	propionyl-CoA carboxylase alpha subunit
778	 66.22	0	801597..802040	-	147	77462743	-	RSP_6041	-	hypothetical protein
779	 66.71	0	802132..804261	+	709	77462744	mcmA	RSP_2192	-	methylmalonyl-CoA mutase
780	 72.22	0	804825..805958	+	377	77462745	gcvT	RSP_2193	-	glycine cleavage system aminomethyltransferase T
781	 62.18	-1	805967..806323	+	118	77462746	gcvH	RSP_2194	-	glycine cleavage system protein H
782	 69.00	0	806327..809197	+	956	77462747	gcvP	RSP_2195	-	glycine dehydrogenase
783	 69.30	0	809387..811588	-	733	77462748	-	RSP_2196	-	3-hydroxyacyl-CoA dehydrogenase
784	 69.72	0	811603..812814	-	403	77462749	-	RSP_2197	-	acetyl-CoA acetyltransferase
785	 72.75	0	812885..813328	-	147	77462750	-	RSP_2198	-	hypothetical protein
786	 67.00	0	813355..815130	-	591	77462751	-	RSP_2199	-	putative acyl-CoA dehydrogenase
787	 67.17	0	815149..815547	-	132	77462752	-	RSP_2200	-	MerR family transcriptional regulator
788	 66.40	0	815669..816049	-	126	77462753	-	RSP_2201	-	MerR family transcriptional regulator
789	 75.20	+1	816157..816648	+	163	77462754	-	RSP_2202	-	hypothetical protein
790	 69.23	0	816645..817151	+	168	77462755	-	RSP_2203	-	hypothetical protein
791	 71.84	0	817144..818478	+	444	77462756	-	RSP_2204	-	multidrug efflux pump, MATE family
792	 68.38	0	818490..819248	-	252	77462757	-	RSP_2205	-	hypothetical protein
793	 66.12	0	819245..820165	-	306	77462758	-	RSP_2206	-	hypothetical protein
794	 72.66	0	820251..821051	-	266	77462759	deoD	RSP_2207	-	purine nucleoside phosphorylase
795	 69.25	0	821053..822021	-	322	77462760	-	RSP_2208	-	ABC sugar transporter, inner membrane subunit
796	 68.40	0	822018..823112	-	364	77462761	-	RSP_2209	-	ABC sugar transporter, inner membrane subunit
797	 69.26	0	823112..824689	-	525	77462762	-	RSP_2210	-	ABC sugar transporter, fused ATPase subunits
798	 64.66	0	824690..825685	-	331	77462763	-	RSP_2211	-	ABC transporter, periplasmic substrate-binding protein
799	 75.36	+1	825839..826321	-	160	77462764	rimI	RSP_2212	-	putative acetyltransferase
800	 76.03	+1	826318..826926	-	202	77462765	-	RSP_2213	-	hypothetical protein
801	 67.74	0	826916..827476	-	186	77462766	-	RSP_2214	-	nitrogen-fixing NifU
802	 68.15	0	827623..828027	-	134	77462767	-	RSP_2215	-	hypothetical protein
803	 68.52	0	828137..829000	-	287	77462768	ilvE	RSP_2216	-	aminotransferase
804	 71.25	0	829071..829550	-	159	77462769	-	RSP_2217	-	hypothetical protein
805	 70.53	0	829813..830355	+	180	77462770	-	RSP_2218	-	hypothetical protein
806	 71.09	0	830390..831271	-	293	77462771	-	RSP_2219	-	putative lipid A biosynthesis lauroyl acyltransferase
807	 70.76	0	831570..832643	-	357	77462772	-	RSP_2220	-	flagellar motor switch protein (fliG)
808	 69.23	0	832703..832858	-	51	77462773	-	RSP_6042	-	hypothetical protein
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.