IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
651	 68.81	0	661551..662390	-	279	77462616	-	RSP_2068	-	putative ClpP-like protease
652	 67.15	0	662387..663637	-	416	77462617	-	RSP_2069	-	HK97 family phage portal protein
653	 66.02	0	663637..665346	-	569	77462618	-	RSP_2070	-	putative Phage-related terminase
654	 66.67	0	665348..665824	-	158	77462619	-	RSP_2071	-	hypothetical protein
655	 71.33	0	665867..666766	-	299	77462620	-	RSP_2072	-	putative Phage-related holin protein
656	 71.49	0	666873..667535	-	220	77462621	-	RSP_6033	-	hypothetical protein
657	 73.12	+1	667532..668104	-	190	77462622	-	RSP_2073	-	hypothetical protein
658	 70.18	0	668308..668991	-	227	77462623	-	RSP_2074	-	hypothetical protein
659	 73.27	+1	668998..669633	-	211	77462624	-	RSP_6034	-	hypothetical protein
660	 63.13	-1	669791..670129	-	112	77462625	-	RSP_6035	-	hypothetical protein
661	 54.70	-2	670405..670755	+	116	77462626	-	RSP_2075	-	putative transcriptional regulator
662	 57.76	-2	670762..671064	-	100	77462627	-	RSP_2076	-	hypothetical protein
663	 74.77	+1	671395..671727	+	110	77462628	-	RSP_2077	-	hypothetical protein
664	 70.43	0	671724..672122	+	132	77462629	-	RSP_2078	-	hypothetical protein
665	 72.52	0	672245..674056	+	603	77462630	-	RSP_2079	-	ParB family protein
666	 65.80	0	674132..674362	+	76	77462631	-	RSP_6036	-	hypothetical protein
667	 68.81	0	674362..675387	+	341	77462632	-	RSP_2080	-	putative tyrosine recombinase
668	 69.00	0	675541..676011	-	156	77462633	-	RSP_2081	-	GNAT family acetyltransferase
669	 68.27	0	676328..676639	-	103	77462634	-	RSP_2082	-	putative NADH-ubiquinone oxidoreductase-related protein
670	 66.62	0	676895..679078	+	727	77462635	uvrB	RSP_2083	-	excinuclease ABC subunit B
671	 70.73	0	679417..680130	+	237	77462636	-	RSP_2084	-	hypothetical protein
672	 68.13	0	680136..680408	-	90	77462637	-	RSP_2085	-	hypothetical protein
673	 64.78	0	680509..680826	-	105	77462638	-	RSP_2086	-	putative antibiotic biosynthesis monooxygenase
674	 68.20	0	680949..681209	+	86	77462639	-	RSP_2087	-	hypothetical protein
675	 64.58	-1	681463..681606	+	47	77462640	-	RSP_6220	-	hypothetical protein
676	 64.44	-1	681644..683443	-	599	77462641	lepA	RSP_2088	-	GTP-binding protein LepA
677	 67.16	0	684379..687843	-	1154	77462642	pycA	RSP_2090	-	pyruvate carboxylase
678	 67.60	0	688026..690377	+	783	77462643	-	RSP_2092	-	ATP-dependent DNA helicase Rep
679	 74.69	+1	690398..691543	-	381	77462644	-	RSP_2091	-	putative benzoate transporter, BenE
680	 63.89	-1	692464..692679	-	71	77462645	-	RSP_6037	-	hypothetical protein
681	 71.47	0	692949..694010	+	353	77462646	-	RSP_2093	-	putative Mrp (multidrug resistance-associated proteins) family protein
682	 65.09	0	694911..695417	+	168	77462647	-	RSP_2095	-	cell division protein MraZ
683	 72.39	0	695421..696416	+	331	77462648	-	RSP_6038	-	methyltransferase MraW/YabC
684	 68.33	0	696417..696776	+	119	77462649	-	RSP_2097	-	putative FtsL
685	 69.12	0	696773..698566	+	597	77462650	ftsI	RSP_2098	-	cell division protein FtsI/penicillin-binding protein 2
686	 73.72	+1	698581..700068	+	495	77462651	murE	RSP_2099	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
687	 74.20	+1	700157..701590	+	477	77462652	murF	RSP_2100	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
688	 65.84	0	701603..702685	+	360	77462653	mraY	RSP_2101	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
689	 72.16	0	702782..703363	+	193	77462654	-	RSP_2102	-	hypothetical protein
690	 70.67	0	703796..705193	+	465	77462655	murD	RSP_2103	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
691	 69.21	0	705250..705720	+	156	77462656	-	RSP_2104	-	hypothetical protein
692	 71.60	0	706074..706580	-	168	77462657	-	RSP_2105	-	hypothetical protein
693	 67.10	0	706721..707887	+	388	77462658	ftsW	RSP_2106	-	cell division protein FtsW
694	 72.51	0	707889..708983	+	364	77462659	murG	RSP_2107	-	N-acetylglucosaminyl transferase
695	 68.65	0	708980..710392	+	470	77462660	murC	RSP_2108	-	UDP-N-acetylmuramate--L-alanine ligase
696	 71.76	0	710406..710660	+	84	77462661	-	RSP_2109	-	hypothetical protein
697	 70.01	0	710657..711583	+	308	77462662	murB	RSP_2110	-	UDP-N-acetylmuramate dehydrogenase
698	 69.16	0	711623..712546	+	307	77462663	ddlA	RSP_2111	-	D-alanine--D-alanine ligase
699	 72.71	0	712534..713460	+	308	77462664	ftsQ	RSP_2112	-	cell division septal protein FtsQ
700	 68.99	0	713457..714791	+	444	77462665	ftsA	RSP_2113	-	cell division protein FtsA
701	 70.95	0	714971..716629	+	552	77462666	ftsZ1	RSP_2114	-	cell division protein FtsZ
702	 69.71	0	716857..717777	+	306	77462667	lpxC	RSP_2115	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
703	 64.40	-1	717892..718728	+	278	77462668	comL	RSP_2117	-	putative ComL lipoprotein
704	 73.86	+1	718756..720396	+	546	77462669	recN	RSP_2118	-	DNA repair protein RecN
705	 72.26	0	720407..720799	-	130	77462670	-	RSP_2119	-	hypothetical protein
706	 71.54	0	720796..722169	-	457	77462671	-	RSP_2120	-	putative D-lactate dehydrogenase (cytochrome), FAD/FMN-containing oxidoreductase
707	 69.52	0	722305..722934	-	209	77462672	-	RSP_2121	-	hypothetical protein
708	 63.23	-1	723139..723837	-	232	77462673	mtbC	RSP_2122	-	putative dimethylamine corrinoid protein
709	 72.82	0	723994..725082	+	362	77462674	-	RSP_2123	-	radical SAM domain-containing protein
710	 71.43	0	725180..726187	-	335	77462675	-	RSP_2124	-	methionine synthase I
711	 67.29	0	726399..726719	-	106	77462676	-	RSP_2125	-	hypothetical protein
712	 66.53	0	726902..727654	+	250	77462677	purC	RSP_2126	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
713	 63.75	-1	727669..727908	+	79	77462678	purS	RSP_2127	-	component of phosphoribosylformylglycinamidine (FGAM) synthetase
714	 70.85	0	728140..728808	+	222	77462679	purQ	RSP_2128	-	phosphoribosylformylglycinamidine synthase I (FGAM) synthase
715	 68.14	0	728856..730619	+	587	77462680	-	RSP_2129	-	sensor histidine kinase
716	 66.37	0	730629..731957	+	442	77462681	-	RSP_2130	-	two component, sigma54 specific, Fis family transcriptional regulator
717	 69.65	0	732464..735274	+	936	77462682	rne	RSP_2131	-	RNAse E
718	 72.81	0	735283..735510	-	75	77462683	-	RSP_2132	-	hypothetical protein
719	 68.01	0	735655..736401	+	248	77462684	ccdA	RSP_2134	-	putative cytochrome c-type biogenesis protein CcdA
720	 75.14	+1	736430..737644	+	404	77462685	-	RSP_2136	-	hypothetical protein
721	 72.07	0	737626..737847	-	73	77462686	-	RSP_2135	-	hypothetical protein
722	 73.04	+1	737844..738047	-	67	77462687	-	RSP_2137	-	hypothetical protein
723	 65.52	0	738047..739441	-	464	77462688	fumC	RSP_2138	-	fumarate hydratase
724	 66.45	0	739608..740066	-	152	77462689	-	RSP_2139	-	hypothetical protein
725	 74.58	+1	740169..740825	-	218	77462690	-	RSP_2140	-	hypothetical protein
726	 66.28	0	741747..742793	-	348	77462691	-	RSP_2141	-	ABC polyamine transporter, periplasmic substrate-binding protein
727	 71.43	0	743132..744370	+	412	77462692	-	RSP_2142	-	NifS-related protein
728	 72.18	0	744522..745937	+	471	77462693	-	RSP_2143	-	deoxyribodipyrimidine photo-lyase type I
729	 66.58	0	745971..747182	+	403	77462694	cfaS	RSP_2144	-	cyclopropane-fatty-acyl-phospholipid synthase
730	 70.98	0	747208..747648	+	146	77462695	trgA	RSP_2145	-	tellurite resistance protein
731	 74.22	+1	747648..748733	+	361	77462696	trgB	RSP_2146	-	tellurite resistance protein
732	 68.31	0	749066..750100	+	344	77462697	cysK	RSP_2147	-	cysteine synthase A
733	 70.32	0	750104..752647	+	847	77462698	-	RSP_2148	-	small conductance mechanosensitive Ion channel
734	 71.67	0	752647..753366	+	239	77462699	-	RSP_2149	-	Ala-tRNA(Pro) hydrolase
735	 74.37	+1	753492..754205	-	237	77462700	-	RSP_2150	-	glycosyl transferase
736	 73.91	+1	754202..754753	-	183	77462701	yohD	RSP_2151	-	DedA family, membrane protein
737	 75.02	+1	754750..755838	-	362	77462702	-	RSP_2152	-	ceramide glucosyltransferase
738	 71.00	0	755838..756644	-	268	77462703	-	RSP_2153	-	metallo-phosphoesterase
739	 71.89	0	756778..758079	-	433	77462704	-	RSP_2154	-	hypothetical protein
740	 71.57	0	758081..759406	-	441	77462705	hisD	RSP_2155	-	histidinol dehydrogenase
741	 66.17	0	759416..760213	-	265	77462706	-	RSP_2156	-	ABC transporter, inner membrane subunit
742	 70.09	0	760210..761145	-	311	77462707	-	RSP_2157	-	ABC transporter, inner membrane subunit
743	 67.94	0	761705..762802	-	365	77462708	-	RSP_2158	-	ABC transporter, periplasmic solute-binding protein
744	 71.52	0	762822..763955	-	377	77462709	-	RSP_2159	-	ABC transporter, ATPase subunit
745	 71.63	0	764032..764796	-	254	77462710	gno	RSP_2160	-	Short-chain dehydrogenase/reductase
746	 68.22	0	764992..765699	-	235	77462711	bcrC	RSP_2161	-	efflux channel
747	 68.28	0	765995..766798	+	267	77462712	-	RSP_2163	-	lytic murein transglycosylase, putative
748	 67.98	0	767169..767624	-	151	77462713	putR	RSP_2165	-	AsnC family transcriptional regulator
749	 73.23	+1	767735..771376	+	1213	77462714	putA	RSP_2166	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
750	 66.67	0	771407..772147	+	246	77462715	-	RSP_2167	-	hypothetical protein
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.