IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
608	 73.58	+1	624498..624815	-	105	77462573	-	RSP_2025	-	hypothetical protein
609	 72.19	0	624857..625834	+	325	77462574	-	RSP_2026	-	AraC family transcriptional regulator
610	 72.50	0	626074..626964	-	296	77462575	-	RSP_2027	-	LysR family transcriptional regulator
611	 69.44	0	627062..627385	+	107	77462576	-	RSP_2028	-	hypothetical protein
612	 73.46	+1	627382..628161	+	259	77462577	ucpA	RSP_2029	-	short chain dehydrogenase
613	 66.88	0	628243..629184	-	313	77462578	-	RSP_2030	-	putative sensor histidine kinase
614	 63.46	-1	629873..630277	+	134	77462579	-	RSP_2032	-	Gifsy-1 prophage protein
615	 62.37	-1	630298..630576	+	92	77462580	-	RSP_2033	-	hypothetical protein
616	 65.85	0	630649..631383	+	244	77462581	-	RSP_2034	-	CAAX amino protease
617	 71.72	0	631399..631695	+	98	77462582	-	RSP_6030	-	hypothetical protein
618	 65.25	0	631702..632406	-	234	77462583	-	RSP_2035	-	hypothetical protein
619	 64.14	-1	632521..632718	+	65	77462584	-	RSP_2036	-	putative ECF/RNA polymerase sigma factor protein
620	 69.58	0	632780..633466	+	228	77462585	-	RSP_2037	-	hypothetical protein
621	 64.02	-1	633935..634387	+	150	77462586	-	RSP_2038	-	acetyltransferase
622	 63.61	-1	634626..635378	+	250	77462587	linC	RSP_2039	-	short chain dehydrogenase
623	 65.15	0	635422..635619	+	65	77462588	-	RSP_2040	-	putative transposase
624	 69.12	0	635737..636591	+	284	77462589	-	RSP_2041	-	hypothetical protein
625	 54.92	-2	636721..636984	+	87	77462590	-	RSP_2043	-	hypothetical protein
626	 64.25	-1	636959..637414	-	151	77462591	-	RSP_2042	-	hypothetical protein
627	 44.30	-2	637688..639064	+	458	77462592	-	RSP_2044	-	ATPase
628	 56.57	-2	639541..641055	+	504	77462593	-	RSP_2045	-	hypothetical protein
629	 56.52	-2	641174..642385	+	403	77462594	-	RSP_2046	-	hypothetical protein
630	 57.36	-2	642382..644187	+	601	77462595	-	RSP_2047	-	ThiF family protein
631	 56.07	-2	644180..644698	+	172	77462596	-	RSP_2048	-	hypothetical protein
632	 67.07	0	644853..645350	-	165	77462597	-	RSP_2049	-	hypothetical protein
633	 74.20	+1	645363..646172	-	269	77462598	-	RSP_2050	-	hypothetical protein
634	 68.28	0	646227..647033	-	268	77462599	-	RSP_2052	-	N6 adenine-specific DNA methyltransferase, D12 class
635	 63.47	-1	647337..648242	+	301	77462600	-	RSP_2053	-	RarD family protein
636	 72.33	0	648313..648630	-	105	77462601	-	RSP_2054	-	hypothetical protein
637	 69.81	0	648767..649084	-	105	77462602	-	RSP_2055	-	hypothetical protein
638	 64.47	-1	649109..649426	-	105	77462603	-	RSP_2056	-	hypothetical protein
639	 71.92	0	649433..650917	-	494	77462604	-	RSP_2057	-	hypothetical protein
640	 71.83	0	650933..651823	-	296	77462605	-	RSP_2058	-	hypothetical protein
641	 71.31	0	651823..656844	-	1673	77462606	-	RSP_2059	-	phage tail tape measure protein
642	 73.12	+1	656968..657153	-	61	77462607	-	RSP_2061	-	hypothetical protein
643	 71.32	0	657288..657674	-	128	77462608	-	RSP_2062	-	hypothetical protein
644	 67.12	0	657671..658114	-	147	77462609	-	RSP_2063	-	hypothetical protein
645	 71.39	0	658124..658504	-	126	77462610	-	RSP_2064	-	hypothetical protein
646	 70.97	0	658508..659065	-	185	77462611	-	RSP_2065	-	hypothetical protein
647	 69.37	0	659065..659397	-	110	77462612	-	RSP_2066	-	hypothetical protein
648	 66.96	0	659394..659735	-	113	77462613	-	RSP_6031	-	hypothetical protein
649	 71.49	0	659732..660166	-	144	77462614	-	RSP_6032	-	hypothetical protein
650	 67.67	0	660237..661538	-	433	77462615	-	RSP_2067	-	prophage LambdaSo, HK97 family major capsid protein
651	 68.81	0	661551..662390	-	279	77462616	-	RSP_2068	-	putative ClpP-like protease
652	 67.15	0	662387..663637	-	416	77462617	-	RSP_2069	-	HK97 family phage portal protein
653	 66.02	0	663637..665346	-	569	77462618	-	RSP_2070	-	putative Phage-related terminase
654	 66.67	0	665348..665824	-	158	77462619	-	RSP_2071	-	hypothetical protein
655	 71.33	0	665867..666766	-	299	77462620	-	RSP_2072	-	putative Phage-related holin protein
656	 71.49	0	666873..667535	-	220	77462621	-	RSP_6033	-	hypothetical protein
657	 73.12	+1	667532..668104	-	190	77462622	-	RSP_2073	-	hypothetical protein
658	 70.18	0	668308..668991	-	227	77462623	-	RSP_2074	-	hypothetical protein
659	 73.27	+1	668998..669633	-	211	77462624	-	RSP_6034	-	hypothetical protein
660	 63.13	-1	669791..670129	-	112	77462625	-	RSP_6035	-	hypothetical protein
661	 54.70	-2	670405..670755	+	116	77462626	-	RSP_2075	-	putative transcriptional regulator
662	 57.76	-2	670762..671064	-	100	77462627	-	RSP_2076	-	hypothetical protein
663	 74.77	+1	671395..671727	+	110	77462628	-	RSP_2077	-	hypothetical protein
664	 70.43	0	671724..672122	+	132	77462629	-	RSP_2078	-	hypothetical protein
665	 72.52	0	672245..674056	+	603	77462630	-	RSP_2079	-	ParB family protein
666	 65.80	0	674132..674362	+	76	77462631	-	RSP_6036	-	hypothetical protein
667	 68.81	0	674362..675387	+	341	77462632	-	RSP_2080	-	putative tyrosine recombinase
668	 69.00	0	675541..676011	-	156	77462633	-	RSP_2081	-	GNAT family acetyltransferase
669	 68.27	0	676328..676639	-	103	77462634	-	RSP_2082	-	putative NADH-ubiquinone oxidoreductase-related protein
670	 66.62	0	676895..679078	+	727	77462635	uvrB	RSP_2083	-	excinuclease ABC subunit B
671	 70.73	0	679417..680130	+	237	77462636	-	RSP_2084	-	hypothetical protein
672	 68.13	0	680136..680408	-	90	77462637	-	RSP_2085	-	hypothetical protein
673	 64.78	0	680509..680826	-	105	77462638	-	RSP_2086	-	putative antibiotic biosynthesis monooxygenase
674	 68.20	0	680949..681209	+	86	77462639	-	RSP_2087	-	hypothetical protein
675	 64.58	-1	681463..681606	+	47	77462640	-	RSP_6220	-	hypothetical protein
676	 64.44	-1	681644..683443	-	599	77462641	lepA	RSP_2088	-	GTP-binding protein LepA
677	 67.16	0	684379..687843	-	1154	77462642	pycA	RSP_2090	-	pyruvate carboxylase
678	 67.60	0	688026..690377	+	783	77462643	-	RSP_2092	-	ATP-dependent DNA helicase Rep
679	 74.69	+1	690398..691543	-	381	77462644	-	RSP_2091	-	putative benzoate transporter, BenE
680	 63.89	-1	692464..692679	-	71	77462645	-	RSP_6037	-	hypothetical protein
681	 71.47	0	692949..694010	+	353	77462646	-	RSP_2093	-	putative Mrp (multidrug resistance-associated proteins) family protein
682	 65.09	0	694911..695417	+	168	77462647	-	RSP_2095	-	cell division protein MraZ
683	 72.39	0	695421..696416	+	331	77462648	-	RSP_6038	-	methyltransferase MraW/YabC
684	 68.33	0	696417..696776	+	119	77462649	-	RSP_2097	-	putative FtsL
685	 69.12	0	696773..698566	+	597	77462650	ftsI	RSP_2098	-	cell division protein FtsI/penicillin-binding protein 2
686	 73.72	+1	698581..700068	+	495	77462651	murE	RSP_2099	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
687	 74.20	+1	700157..701590	+	477	77462652	murF	RSP_2100	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
688	 65.84	0	701603..702685	+	360	77462653	mraY	RSP_2101	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
689	 72.16	0	702782..703363	+	193	77462654	-	RSP_2102	-	hypothetical protein
690	 70.67	0	703796..705193	+	465	77462655	murD	RSP_2103	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
691	 69.21	0	705250..705720	+	156	77462656	-	RSP_2104	-	hypothetical protein
692	 71.60	0	706074..706580	-	168	77462657	-	RSP_2105	-	hypothetical protein
693	 67.10	0	706721..707887	+	388	77462658	ftsW	RSP_2106	-	cell division protein FtsW
694	 72.51	0	707889..708983	+	364	77462659	murG	RSP_2107	-	N-acetylglucosaminyl transferase
695	 68.65	0	708980..710392	+	470	77462660	murC	RSP_2108	-	UDP-N-acetylmuramate--L-alanine ligase
696	 71.76	0	710406..710660	+	84	77462661	-	RSP_2109	-	hypothetical protein
697	 70.01	0	710657..711583	+	308	77462662	murB	RSP_2110	-	UDP-N-acetylmuramate dehydrogenase
698	 69.16	0	711623..712546	+	307	77462663	ddlA	RSP_2111	-	D-alanine--D-alanine ligase
699	 72.71	0	712534..713460	+	308	77462664	ftsQ	RSP_2112	-	cell division septal protein FtsQ
700	 68.99	0	713457..714791	+	444	77462665	ftsA	RSP_2113	-	cell division protein FtsA
701	 70.95	0	714971..716629	+	552	77462666	ftsZ1	RSP_2114	-	cell division protein FtsZ
702	 69.71	0	716857..717777	+	306	77462667	lpxC	RSP_2115	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
703	 64.40	-1	717892..718728	+	278	77462668	comL	RSP_2117	-	putative ComL lipoprotein
704	 73.86	+1	718756..720396	+	546	77462669	recN	RSP_2118	-	DNA repair protein RecN
705	 72.26	0	720407..720799	-	130	77462670	-	RSP_2119	-	hypothetical protein
706	 71.54	0	720796..722169	-	457	77462671	-	RSP_2120	-	putative D-lactate dehydrogenase (cytochrome), FAD/FMN-containing oxidoreductase
707	 69.52	0	722305..722934	-	209	77462672	-	RSP_2121	-	hypothetical protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.