IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
558	 73.94	+1	569140..569469	-	109	77462523	-	RSP_6028	-	hypothetical protein
559	 63.29	-1	569466..570560	-	364	77462524	cobS	RSP_1977	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
560	 64.15	-1	570606..571241	-	211	77462525	-	RSP_1978	-	DnaJ family molecular chaperone
561	 68.22	0	571316..571573	+	85	77462526	-	RSP_1979	-	stress induced morphogen, BolA
562	 69.24	0	571682..573898	-	738	77462527	glcB	RSP_1980	-	malate synthase G
563	 75.38	+1	573941..575305	-	454	77462528	-	RSP_1981	-	deoxyribodipyrimidine photo-lyase type I
564	 69.91	0	575763..578318	+	851	77462529	-	RSP_1982	-	aminopeptidase N
565	 66.67	0	578452..579336	+	294	77462530	sqdA	RSP_1983	-	phospholipid/glycerol acyltransferase
566	 72.16	0	579524..580669	+	381	77462531	-	RSP_1984	-	histidinol-phosphate aminotransferase
567	 72.30	0	580691..581134	-	147	77462532	-	RSP_1985	-	hypothetical protein
568	 65.08	0	581296..582807	-	503	77462533	gatB	RSP_1986	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
569	 71.69	0	582976..583572	+	198	77462534	-	RSP_1987	-	hypothetical protein
570	 71.30	0	583576..583920	-	114	77462535	-	RSP_1988	-	hypothetical protein
571	 67.41	0	583987..586950	-	987	77462536	valS	RSP_1989	-	valyl-tRNA synthetase
572	 68.06	0	587069..587500	-	143	77462537	-	RSP_1990	-	AsnC family transcriptional regulator
573	 68.59	0	587720..588865	+	381	77462538	-	RSP_1991	-	putative ornithine decarboxylase
574	 70.30	0	588944..590125	+	393	77462539	-	RSP_1992	-	hypothetical protein
575	 69.18	0	590153..590629	-	158	77462540	-	RSP_1993	-	hypothetical protein
576	 64.10	-1	590962..592248	-	428	77462541	gltA	RSP_1994	-	citrate synthase
577	 66.60	0	592355..593770	-	471	77462542	gltX	RSP_1995	-	glutamyl-tRNA synthetase
578	 72.51	0	593904..595958	+	684	77462543	-	RSP_1996	-	putative competence protein
579	 67.25	0	596014..596700	-	228	77462544	lexA	RSP_1997	-	LexA repressor
580	 72.32	0	596757..597941	-	394	77462545	-	RSP_1998	-	molybdopterin molybdochelatase
581	 70.00	0	597938..598417	-	159	77462546	moaC	RSP_2000	-	molybdenum cofactor biosynthesis protein C
582	 69.62	0	598417..599229	-	270	77462547	trpC	RSP_6214	-	indole-3-glycerol-phosphate synthase
583	 71.78	0	599260..600276	-	338	77462548	trpD	RSP_2001	-	anthranilate phosphoribosyltransferase
584	 68.88	0	600273..600860	-	195	77462549	trpG	RSP_2002	-	anthranilate synthase component II
585	 77.34	+2	601039..602472	+	477	77462550	yibQ	RSP_2003	-	YibQ protein
586	 68.98	0	602636..604147	-	503	77462551	trpE	RSP_2004	-	anthranilate synthase component I
587	 71.11	0	604158..606023	-	621	77462552	ybaU	RSP_2005	-	peptidyl-prolyl cis-trans isomerse
588	 74.03	+1	606221..608203	+	660	77462553	amsA	RSP_2006	-	hypothetical protein
589	 75.64	+1	608386..609009	-	207	77462554	-	RSP_2007	-	hypothetical protein
590	 70.22	0	609595..610776	+	393	77462555	argD	RSP_2008	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
591	 67.21	0	610890..611816	+	308	77462556	argF	RSP_2009	-	ornithine carbamoyltransferase
592	 67.63	0	612040..612246	-	68	77462557	-	RSP_2010	-	hypothetical protein
593	 75.35	+1	612424..612918	-	164	77462558	-	RSP_2011	-	putative transcription elongation factor
594	 70.86	0	612944..613420	-	158	77462559	-	RSP_2012	-	NUDIX hydrolase, MutT
595	 75.69	+1	613899..616325	-	808	77462560	-	RSP_2013	-	DEAD/DEAH box helicase
596	 73.81	+1	616371..617084	-	237	77462561	-	RSP_2014	-	hypothetical protein
597	 74.07	+1	617221..618192	+	323	77462562	argK	RSP_2015	-	arginine/ornithine transport system ATPase
598	 65.29	0	618406..618696	+	96	77462563	rpmB	RSP_2016	-	50S ribosomal protein L28
599	 76.23	+1	618887..619231	+	114	77462564	-	RSP_6029	-	hypothetical protein
600	 69.36	0	619261..619743	+	160	77462565	-	RSP_2017	-	hypothetical protein
601	 67.95	0	619783..620094	-	103	77462566	-	RSP_2018	-	hypothetical protein
602	 72.41	0	620302..620754	-	150	77462567	-	RSP_2019	-	hypothetical protein
603	 69.75	0	621117..621602	-	161	77462568	-	RSP_2020	-	DHC, diheme cytochrome c
604	 73.08	+1	621617..622006	-	129	77462569	shp	RSP_2021	-	Mono-heme class I cytochrome c
605	 72.99	+1	622010..623101	-	363	77462570	-	RSP_2022	-	cytochrome b/diheme cytochrome c hybrid protein
606	 77.61	+2	623291..623875	-	194	77462571	-	RSP_2023	-	hypothetical protein
607	 64.25	-1	624198..624404	+	68	77462572	cspA	RSP_2024	-	cold-shock DNA-binding protein family protein
608	 73.58	+1	624498..624815	-	105	77462573	-	RSP_2025	-	hypothetical protein
609	 72.19	0	624857..625834	+	325	77462574	-	RSP_2026	-	AraC family transcriptional regulator
610	 72.50	0	626074..626964	-	296	77462575	-	RSP_2027	-	LysR family transcriptional regulator
611	 69.44	0	627062..627385	+	107	77462576	-	RSP_2028	-	hypothetical protein
612	 73.46	+1	627382..628161	+	259	77462577	ucpA	RSP_2029	-	short chain dehydrogenase
613	 66.88	0	628243..629184	-	313	77462578	-	RSP_2030	-	putative sensor histidine kinase
614	 63.46	-1	629873..630277	+	134	77462579	-	RSP_2032	-	Gifsy-1 prophage protein
615	 62.37	-1	630298..630576	+	92	77462580	-	RSP_2033	-	hypothetical protein
616	 65.85	0	630649..631383	+	244	77462581	-	RSP_2034	-	CAAX amino protease
617	 71.72	0	631399..631695	+	98	77462582	-	RSP_6030	-	hypothetical protein
618	 65.25	0	631702..632406	-	234	77462583	-	RSP_2035	-	hypothetical protein
619	 64.14	-1	632521..632718	+	65	77462584	-	RSP_2036	-	putative ECF/RNA polymerase sigma factor protein
620	 69.58	0	632780..633466	+	228	77462585	-	RSP_2037	-	hypothetical protein
621	 64.02	-1	633935..634387	+	150	77462586	-	RSP_2038	-	acetyltransferase
622	 63.61	-1	634626..635378	+	250	77462587	linC	RSP_2039	-	short chain dehydrogenase
623	 65.15	0	635422..635619	+	65	77462588	-	RSP_2040	-	putative transposase
624	 69.12	0	635737..636591	+	284	77462589	-	RSP_2041	-	hypothetical protein
625	 54.92	-2	636721..636984	+	87	77462590	-	RSP_2043	-	hypothetical protein
626	 64.25	-1	636959..637414	-	151	77462591	-	RSP_2042	-	hypothetical protein
627	 44.30	-2	637688..639064	+	458	77462592	-	RSP_2044	-	ATPase
628	 56.57	-2	639541..641055	+	504	77462593	-	RSP_2045	-	hypothetical protein
629	 56.52	-2	641174..642385	+	403	77462594	-	RSP_2046	-	hypothetical protein
630	 57.36	-2	642382..644187	+	601	77462595	-	RSP_2047	-	ThiF family protein
631	 56.07	-2	644180..644698	+	172	77462596	-	RSP_2048	-	hypothetical protein
632	 67.07	0	644853..645350	-	165	77462597	-	RSP_2049	-	hypothetical protein
633	 74.20	+1	645363..646172	-	269	77462598	-	RSP_2050	-	hypothetical protein
634	 68.28	0	646227..647033	-	268	77462599	-	RSP_2052	-	N6 adenine-specific DNA methyltransferase, D12 class
635	 63.47	-1	647337..648242	+	301	77462600	-	RSP_2053	-	RarD family protein
636	 72.33	0	648313..648630	-	105	77462601	-	RSP_2054	-	hypothetical protein
637	 69.81	0	648767..649084	-	105	77462602	-	RSP_2055	-	hypothetical protein
638	 64.47	-1	649109..649426	-	105	77462603	-	RSP_2056	-	hypothetical protein
639	 71.92	0	649433..650917	-	494	77462604	-	RSP_2057	-	hypothetical protein
640	 71.83	0	650933..651823	-	296	77462605	-	RSP_2058	-	hypothetical protein
641	 71.31	0	651823..656844	-	1673	77462606	-	RSP_2059	-	phage tail tape measure protein
642	 73.12	+1	656968..657153	-	61	77462607	-	RSP_2061	-	hypothetical protein
643	 71.32	0	657288..657674	-	128	77462608	-	RSP_2062	-	hypothetical protein
644	 67.12	0	657671..658114	-	147	77462609	-	RSP_2063	-	hypothetical protein
645	 71.39	0	658124..658504	-	126	77462610	-	RSP_2064	-	hypothetical protein
646	 70.97	0	658508..659065	-	185	77462611	-	RSP_2065	-	hypothetical protein
647	 69.37	0	659065..659397	-	110	77462612	-	RSP_2066	-	hypothetical protein
648	 66.96	0	659394..659735	-	113	77462613	-	RSP_6031	-	hypothetical protein
649	 71.49	0	659732..660166	-	144	77462614	-	RSP_6032	-	hypothetical protein
650	 67.67	0	660237..661538	-	433	77462615	-	RSP_2067	-	prophage LambdaSo, HK97 family major capsid protein
651	 68.81	0	661551..662390	-	279	77462616	-	RSP_2068	-	putative ClpP-like protease
652	 67.15	0	662387..663637	-	416	77462617	-	RSP_2069	-	HK97 family phage portal protein
653	 66.02	0	663637..665346	-	569	77462618	-	RSP_2070	-	putative Phage-related terminase
654	 66.67	0	665348..665824	-	158	77462619	-	RSP_2071	-	hypothetical protein
655	 71.33	0	665867..666766	-	299	77462620	-	RSP_2072	-	putative Phage-related holin protein
656	 71.49	0	666873..667535	-	220	77462621	-	RSP_6033	-	hypothetical protein
657	 73.12	+1	667532..668104	-	190	77462622	-	RSP_2073	-	hypothetical protein
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.