version 1.0
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609 3022 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 12 74.33 +1 19725..20624 - 299 77461977 - RSP_1439 - ABC Fe+3 hydroxamate (ferrichrome) transporter, periplasmic siderophore binding protein 13 66.57 0 20618..22717 - 699 77461978 - RSP_1440 - TonB dependent, hydroxamate-type ferrisiderophore, outer membrane receptor 14 69.89 0 23029..24177 + 382 77461979 - RSP_1441 - GntR family regulatory protein 15 64.92 0 24295..25551 + 418 77461980 - RSP_1442 - ABC sugar transporter, periplasmic sugar-binding protein 16 62.83 -1 25619..26530 + 303 77461981 - RSP_1443 - ABC sugar transporter, inner membrane subunit 17 63.49 -1 26527..27375 + 282 77461982 - RSP_1444 - ABC sugar transporter, inner membrane subunit 18 67.75 0 27395..28498 + 367 77461983 - RSP_1445 - ABC sugar transporter, ATPase subunit 19 73.89 +1 28495..29436 + 313 77461984 - RSP_1446 - putative sugar kinase 20 70.45 0 29463..30467 + 334 77461985 - RSP_1447 - glucosamine--fructose-6-phosphate aminotransferase (isomerizing) 21 70.88 0 30522..31541 + 339 77461986 - RSP_1448 - L-threonine aldolase 22 68.74 0 31726..32496 - 256 77461987 - RSP_1449 - DeoR family transcriptional regulator 23 68.68 0 32769..33563 + 264 77461988 - RSP_1450 - inositol monophosphatase family protein 24 65.21 0 33636..35210 + 524 77461989 - RSP_1451 - ABC peptide/nickel/opine transporter, periplasmic substrate-binding protein 25 65.85 0 35289..36269 + 326 77461990 - RSP_1452 - ABC peptide/nickel/opine transporter, inner membrane subunit 26 66.78 0 36269..37180 + 303 77461991 - RSP_1453 - ABC peptide/nickel/opine transporter, inner membrane subunit 27 69.74 0 37182..39035 + 617 77461992 - RSP_1454 - ABC peptide/nickel/opine transporter, fused ATPase subunits 28 70.04 0 39028..40302 + 424 77461993 - RSP_1455 - allantoate amidohydrolase 29 71.85 0 40299..41243 + 314 77461994 - RSP_1456 - hypothetical protein 30 65.50 0 41240..42184 + 314 77461995 - RSP_1457 - putative choline kinase 31 74.70 +1 43365..44969 - 534 77461996 - RSP_1458 - putative DNA repair enzyme 32 72.16 0 45194..45466 - 90 77461997 - RSP_6001 - hypothetical protein 33 67.74 0 45667..46413 + 248 77461998 - RSP_1459 - hypothetical protein 34 63.41 -1 46555..46800 + 81 77461999 - RSP_1460 - hypothetical protein 35 74.83 +1 46812..47999 + 395 77462000 kdtA RSP_1461 - putative 3-deoxy-D-manno-octulosonic-acid transferase 36 74.57 +1 47999..48997 + 332 77462001 lpxK RSP_1462 - lipid-A-disaccharide synthase 37 70.42 0 49222..50367 - 381 77462002 - RSP_1463 - putative acyl-CoA transferase/carnitine dehydratase 38 64.77 0 50364..51050 - 228 77462003 - RSP_1464 - periplasmic thiol-disulphide interchange protein 39 71.37 0 51047..51577 - 176 77462004 - RSP_1465 - hypothetical protein 40 73.91 +1 51659..52762 + 367 77462005 - RSP_1466 - A/G-specific DNA-adenine glycosylase 41 69.73 0 52800..54071 + 423 77462006 - RSP_1467 - alkane 1-monooxygenase 42 66.04 0 54227..55345 - 372 77462007 - RSP_1468 - site-specific DNA-methyltransferase 43 66.51 0 55434..56072 - 212 77462008 rnhB RSP_1470 - ribonuclease HII 44 76.56 +1 56228..56692 - 154 77462009 - RSP_1471 - hypothetical protein 45 67.91 0 56776..57339 + 187 77462010 - RSP_6002 - hypothetical protein 46 67.23 0 57311..58015 + 234 77462011 - RSP_1472 - hypothetical protein 47 71.77 0 58041..58412 - 123 77462012 - RSP_1473 - hypothetical protein 48 66.30 0 58616..59713 + 365 77462013 nspC RSP_1474 - putative carboxynorspermidine decarboxylase protein 49 65.62 0 59750..60988 + 412 77462014 - RSP_1475 - saccharopine dehydrogenase family protein 50 73.41 +1 61181..63124 - 647 77462015 - RSP_1476 - heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase 51 67.78 0 63203..63382 - 59 77462016 - RSP_6210 - hypothetical protein 52 69.94 0 63409..65028 - 539 77462017 - RSP_1478 - ABC oligopeptide transporter, fused ATPase subunits 53 67.54 0 65030..66169 - 379 77462018 OppC RSP_1479 - ABC oligopeptide transporter, inner membrane subunit OppC 54 66.88 0 66162..67085 - 307 77462019 OppB RSP_1480 - ABC oligopeptide transporter, inner membrane subunit OppB 55 65.28 0 67142..68731 - 529 77462020 OppA RSP_1481 - ABC oligopeptide transporter, perplasmic substrate-binding protein OppA 56 73.33 +1 69574..69933 + 119 77462021 - RSP_1483 - hypothetical protein 57 77.33 +2 70003..70527 - 174 77462022 - RSP_1484 - hypothetical protein 58 72.69 0 70529..72337 - 602 77462023 - RSP_1485 - ATP-dependent RNA helicase 59 72.77 0 72528..73133 + 201 77462024 - RSP_1486 - TetR family transcriptional regulator 60 63.51 -1 73200..73547 + 115 77462025 - RSP_1487 - hypothetical protein 61 72.18 0 73549..74292 + 247 77462026 - RSP_1488 - glyoxalase 62 68.52 0 74424..75338 + 304 77462027 - RSP_1489 - thioredoxin domain-containing protein 63 66.97 0 75342..76010 + 222 77462028 - RSP_1490 - putative ATP-dependent protease La, LON 64 67.22 0 76007..76186 + 59 77462029 - RSP_1491 - hypothetical protein 65 73.82 +1 76263..77492 - 409 77462030 - RSP_1492 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase 66 74.68 +1 77589..78899 + 436 77462031 - RSP_1493 - amidase 67 70.06 0 79022..80200 + 392 77462032 - RSP_1494 - aminotransferase 68 70.14 0 80211..83495 + 1094 77462033 - RSP_1495 - DNA translocase FtsK 69 66.67 0 83627..84265 + 212 77462034 - RSP_1497 - putative outer membrane lipoprotein carrier protein 70 66.84 0 84326..84907 - 193 77462035 - RSP_1496 - hypothetical protein 71 60.66 -1 85139..85504 + 121 77462036 - RSP_1498 - hypothetical protein 72 69.90 0 85545..87122 - 525 77462037 - RSP_1499 - gamma-glutamyltransferase 2 73 72.38 0 87234..87776 - 180 77462038 - RSP_1500 - anti-sigma regulatory kinase 74 67.24 0 87766..88113 - 115 77462039 - RSP_1501 - anti-sigma-factor antagonist domain-containing protein 75 69.09 0 88207..88659 + 150 77462040 - RSP_1502 - GAF domain-containing protein 76 68.44 0 88711..89049 + 112 77462041 - RSP_1503 - hypothetical protein 77 62.84 -1 89065..89325 - 86 77462042 - RSP_1504 - hypothetical protein 78 68.83 0 89409..90056 + 215 77462043 - RSP_1506 - ribosomal large subunit pseudouridine synthase A 79 72.88 0 90032..90787 - 251 77462044 - RSP_1505 - putative metallo-phosphoesterase 80 69.34 0 90784..92244 - 486 77462045 - RSP_1507 - aldehyde dehydrogenase 81 68.88 0 92948..94396 - 482 77462046 - RSP_1508 - hypothetical protein 82 75.96 +1 94407..95708 - 433 77462047 - RSP_6207 - hypothetical protein 83 76.34 +1 95776..96519 - 247 77462048 - RSP_6208 - hypothetical protein 84 74.25 +1 96592..97686 + 364 77462049 - RSP_1509 - O-sialoglycoprotein endopeptidase 85 74.51 +1 97683..98600 + 305 77462050 - RSP_1510 - putative glycerol-3-phosphate dehydrogenase (NAD(P)+) 86 68.86 0 98604..98876 + 90 77462051 - RSP_1511 - YciI-like protein 87 68.12 0 98876..99289 + 137 77462052 - RSP_1512 - hypothetical protein 88 67.83 0 99597..100802 + 401 77462053 trpB RSP_1513 - tryptophan synthase subunit beta 89 64.80 0 100961..102352 - 463 77462054 ahcY RSP_1514 - S-adenosyl-L-homocysteine hydrolase 90 64.16 -1 102475..103431 + 318 77462055 - RSP_1515 - hypothetical protein 91 67.18 0 103428..104012 + 194 77462056 - RSP_1516 - putative S-adenosyl L-homocystein hydrolase 92 62.22 -1 104024..104338 - 104 77462057 spbA RSP_1517 - HNS family histone-like protein 93 68.11 0 104574..105128 - 184 77462058 prrA RSP_1518 - PrrA (RegA), response regulator involved in oxygen regulation of photosynthesis genes 94 62.93 -1 105121..105816 - 231 77462059 prrC RSP_1519 - PrrC 95 68.11 0 105908..107296 + 462 77462060 prrB RSP_1520 - sensor histidine kinase PrrB (RegB) 96 71.47 0 107423..108985 + 520 77462061 - RSP_1521 - hypothetical protein 97 74.28 +1 109269..109754 + 161 77462062 - RSP_1522 - hypothetical protein 98 76.02 +1 109747..110772 + 341 77462063 - RSP_1523 - hypothetical protein 99 71.32 0 110754..111419 + 221 77462064 - RSP_1524 - nucleotidyltransferase family protein 100 74.82 +1 111412..114405 + 997 77462065 - RSP_1525 - putative helicase/exonuclease 101 72.87 0 114434..117754 + 1106 77462066 - RSP_1527 - UvrD/Rep family helicase 102 66.04 0 117813..118133 + 106 77462067 trxA RSP_1529 - thioredoxin 103 67.22 0 118266..119174 - 302 77462068 - RSP_1530 - hypothetical protein 104 69.53 0 119311..119868 + 185 77462069 - RSP_1531 - ATP-dependent protease peptidase subunit 105 66.59 0 119865..121166 + 433 77462070 hslU RSP_1532 - ATP-dependent protease ATP-binding subunit 106 65.56 0 121217..122749 - 510 77462071 - RSP_1533 - putative alginate O-acetyltransferase 107 61.79 -1 122749..122994 - 81 77462072 - RSP_1534 - putative acyl carrier protein 108 71.16 0 123055..124968 - 637 77462073 - RSP_1535 - hypothetical protein 109 76.65 +1 124949..125689 - 246 77462074 - RSP_6005 - putative short chain dehydrogenase 110 68.15 0 125686..126090 - 134 77462075 - RSP_1536 - hypothetical protein 111 66.12 0 126368..127282 + 304 77462076 - RSP_1537 - hypothetical protein 68.78 MEAN 4.15 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.