IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
511	 67.38	0	527494..528192	-	232	77462476	pyrE	RSP_1929	-	orotate phosphoribosyltransferase
512	 71.66	0	528235..529275	-	346	77462477	pyrC	RSP_1930	-	dihydroorotase
513	 70.05	0	529420..530334	+	304	77462478	-	RSP_1931	-	AAA family ATPase
514	 72.35	0	530439..531635	+	398	77462479	-	RSP_1932	-	hypothetical protein
515	 69.81	0	531708..532184	+	158	77462480	-	RSP_6241	-	hypothetical protein
516	 71.51	0	532399..534504	+	701	77462481	-	RSP_1933	-	OmpA/MotB family outer membrane protein
517	 73.63	+1	534620..535021	+	133	77462482	-	RSP_1934	-	sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis
518	 73.07	+1	535062..535592	+	176	77462483	-	RSP_1935	-	sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis
519	 73.03	+1	535592..536596	+	334	77462484	-	RSP_1936	-	molybdopterin biosynthesis protein
520	 62.05	-1	536668..537252	-	194	77462485	infC	RSP_1937	-	translation initiation factor IF-3
521	 73.80	+1	537327..538013	+	228	77462486	-	RSP_1938	-	hypothetical protein
522	 64.19	-1	538127..538933	-	268	77462487	-	RSP_1939	-	NADPH-ferredoxin reductase
523	 67.16	0	538996..539403	-	135	77462488	-	RSP_1940	-	hypothetical protein
524	 67.36	0	539400..540116	-	238	77462489	cysH	RSP_1941	-	phosphoadenosine phosphosulfate reductase
525	 67.74	0	540145..541815	-	556	77462490	-	RSP_1942	-	sulfite/nitrite reductase hemoprotein subunit
526	 70.26	0	541842..542147	-	101	77462491	-	RSP_1943	-	hypothetical protein
527	 72.94	+1	542144..542908	-	254	77462492	-	RSP_1944	-	uroporphyrinogen-III C-methyltransferase
528	 65.37	0	543051..543512	+	153	77462493	-	RSP_1945	-	AsnC family transcriptional regulator
529	 71.32	0	543683..544864	-	393	77462494	-	RSP_1946	-	cytochrome P450 hydroxylase
530	 71.27	0	545193..545930	-	245	77462495	cbbJ	RSP_1947	-	triosephosphate isomerase
531	 62.18	-1	546042..546398	-	118	77462496	-	RSP_1948	-	hypothetical protein
532	 64.74	0	546482..546844	-	120	77462497	-	RSP_1949	-	hypothetical protein
533	 63.93	-1	547132..547935	+	267	77462498	-	RSP_1950	-	hypothetical protein
534	 61.25	-1	548205..548555	-	116	77462499	-	RSP_1951	-	hypothetical protein
535	 61.97	-1	548589..548822	-	77	77462500	-	RSP_1952	-	cold-shock DNA-binding protein family protein
536	 65.05	0	549413..550153	-	246	77462501	-	RSP_1953	-	Crp/FNR family transcriptional regulator
537	 67.79	0	550280..550546	+	88	77462502	-	RSP_1954	-	hypothetical protein
538	 67.55	0	550603..551391	+	262	77462503	-	RSP_1955	-	hypothetical protein
539	 64.00	-1	551878..552252	+	124	77462504	-	RSP_1956	-	hypothetical protein
540	 63.14	-1	552259..552570	-	103	77462505	-	RSP_1957	-	hypothetical protein
541	 59.52	-2	554166..554417	+	83	77462506	-	RSP_1961	-	hypothetical protein
542	 55.48	-2	554720..555148	+	142	77462507	-	RSP_1962	-	hypothetical protein
543	 49.32	-2	555305..555742	-	145	77462508	-	RSP_1963	-	hypothetical protein
544	 65.29	0	555770..556060	-	96	77462509	-	RSP_1964	-	hypothetical protein
545	 61.88	-1	556550..557740	+	396	77462510	-	RSP_1965	-	putative membrane fusion protein family member
546	 63.67	-1	558385..558684	+	99	77462511	-	RSP_1967	-	hypothetical protein
547	 63.47	-1	558661..559536	-	291	77462512	-	RSP_1966	-	ISSod13, transposase
548	 67.23	0	559600..560490	+	296	77462513	-	RSP_1968	-	integrase/recombinase
549	 69.72	0	560737..561783	+	348	77462514	purM	RSP_1969	-	phosphoribosylaminoimidazole synthetase
550	 73.04	+1	561822..562370	+	182	77462515	-	RSP_1970	-	phosphoribosylglycinamide formyltransferase
551	 66.93	0	562467..563624	+	385	77462516	rnd	RSP_1971	-	ribonuclease D
552	 72.19	0	563661..564113	-	150	77462517	-	RSP_1972	-	hypothetical protein
553	 68.07	0	564243..564671	+	142	77462518	-	RSP_1973	-	SufE protein
554	 62.07	-1	564694..565041	-	115	77462519	-	RSP_1974	-	hypothetical protein
555	 70.23	0	565102..566898	-	598	77462520	-	RSP_1975	-	aminopeptidase P
556	 68.71	0	566898..568757	-	619	77462521	cobT	RSP_1976	-	aerobic cobalt chelatase, CobT subunit
557	 73.33	+1	568809..569138	-	109	77462522	-	RSP_6027	-	hypothetical protein
558	 73.94	+1	569140..569469	-	109	77462523	-	RSP_6028	-	hypothetical protein
559	 63.29	-1	569466..570560	-	364	77462524	cobS	RSP_1977	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
560	 64.15	-1	570606..571241	-	211	77462525	-	RSP_1978	-	DnaJ family molecular chaperone
561	 68.22	0	571316..571573	+	85	77462526	-	RSP_1979	-	stress induced morphogen, BolA
562	 69.24	0	571682..573898	-	738	77462527	glcB	RSP_1980	-	malate synthase G
563	 75.38	+1	573941..575305	-	454	77462528	-	RSP_1981	-	deoxyribodipyrimidine photo-lyase type I
564	 69.91	0	575763..578318	+	851	77462529	-	RSP_1982	-	aminopeptidase N
565	 66.67	0	578452..579336	+	294	77462530	sqdA	RSP_1983	-	phospholipid/glycerol acyltransferase
566	 72.16	0	579524..580669	+	381	77462531	-	RSP_1984	-	histidinol-phosphate aminotransferase
567	 72.30	0	580691..581134	-	147	77462532	-	RSP_1985	-	hypothetical protein
568	 65.08	0	581296..582807	-	503	77462533	gatB	RSP_1986	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
569	 71.69	0	582976..583572	+	198	77462534	-	RSP_1987	-	hypothetical protein
570	 71.30	0	583576..583920	-	114	77462535	-	RSP_1988	-	hypothetical protein
571	 67.41	0	583987..586950	-	987	77462536	valS	RSP_1989	-	valyl-tRNA synthetase
572	 68.06	0	587069..587500	-	143	77462537	-	RSP_1990	-	AsnC family transcriptional regulator
573	 68.59	0	587720..588865	+	381	77462538	-	RSP_1991	-	putative ornithine decarboxylase
574	 70.30	0	588944..590125	+	393	77462539	-	RSP_1992	-	hypothetical protein
575	 69.18	0	590153..590629	-	158	77462540	-	RSP_1993	-	hypothetical protein
576	 64.10	-1	590962..592248	-	428	77462541	gltA	RSP_1994	-	citrate synthase
577	 66.60	0	592355..593770	-	471	77462542	gltX	RSP_1995	-	glutamyl-tRNA synthetase
578	 72.51	0	593904..595958	+	684	77462543	-	RSP_1996	-	putative competence protein
579	 67.25	0	596014..596700	-	228	77462544	lexA	RSP_1997	-	LexA repressor
580	 72.32	0	596757..597941	-	394	77462545	-	RSP_1998	-	molybdopterin molybdochelatase
581	 70.00	0	597938..598417	-	159	77462546	moaC	RSP_2000	-	molybdenum cofactor biosynthesis protein C
582	 69.62	0	598417..599229	-	270	77462547	trpC	RSP_6214	-	indole-3-glycerol-phosphate synthase
583	 71.78	0	599260..600276	-	338	77462548	trpD	RSP_2001	-	anthranilate phosphoribosyltransferase
584	 68.88	0	600273..600860	-	195	77462549	trpG	RSP_2002	-	anthranilate synthase component II
585	 77.34	+2	601039..602472	+	477	77462550	yibQ	RSP_2003	-	YibQ protein
586	 68.98	0	602636..604147	-	503	77462551	trpE	RSP_2004	-	anthranilate synthase component I
587	 71.11	0	604158..606023	-	621	77462552	ybaU	RSP_2005	-	peptidyl-prolyl cis-trans isomerse
588	 74.03	+1	606221..608203	+	660	77462553	amsA	RSP_2006	-	hypothetical protein
589	 75.64	+1	608386..609009	-	207	77462554	-	RSP_2007	-	hypothetical protein
590	 70.22	0	609595..610776	+	393	77462555	argD	RSP_2008	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
591	 67.21	0	610890..611816	+	308	77462556	argF	RSP_2009	-	ornithine carbamoyltransferase
592	 67.63	0	612040..612246	-	68	77462557	-	RSP_2010	-	hypothetical protein
593	 75.35	+1	612424..612918	-	164	77462558	-	RSP_2011	-	putative transcription elongation factor
594	 70.86	0	612944..613420	-	158	77462559	-	RSP_2012	-	NUDIX hydrolase, MutT
595	 75.69	+1	613899..616325	-	808	77462560	-	RSP_2013	-	DEAD/DEAH box helicase
596	 73.81	+1	616371..617084	-	237	77462561	-	RSP_2014	-	hypothetical protein
597	 74.07	+1	617221..618192	+	323	77462562	argK	RSP_2015	-	arginine/ornithine transport system ATPase
598	 65.29	0	618406..618696	+	96	77462563	rpmB	RSP_2016	-	50S ribosomal protein L28
599	 76.23	+1	618887..619231	+	114	77462564	-	RSP_6029	-	hypothetical protein
600	 69.36	0	619261..619743	+	160	77462565	-	RSP_2017	-	hypothetical protein
601	 67.95	0	619783..620094	-	103	77462566	-	RSP_2018	-	hypothetical protein
602	 72.41	0	620302..620754	-	150	77462567	-	RSP_2019	-	hypothetical protein
603	 69.75	0	621117..621602	-	161	77462568	-	RSP_2020	-	DHC, diheme cytochrome c
604	 73.08	+1	621617..622006	-	129	77462569	shp	RSP_2021	-	Mono-heme class I cytochrome c
605	 72.99	+1	622010..623101	-	363	77462570	-	RSP_2022	-	cytochrome b/diheme cytochrome c hybrid protein
606	 77.61	+2	623291..623875	-	194	77462571	-	RSP_2023	-	hypothetical protein
607	 64.25	-1	624198..624404	+	68	77462572	cspA	RSP_2024	-	cold-shock DNA-binding protein family protein
608	 73.58	+1	624498..624815	-	105	77462573	-	RSP_2025	-	hypothetical protein
609	 72.19	0	624857..625834	+	325	77462574	-	RSP_2026	-	AraC family transcriptional regulator
610	 72.50	0	626074..626964	-	296	77462575	-	RSP_2027	-	LysR family transcriptional regulator
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.