IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
460	 70.47	0	477423..478079	-	218	77462425	lipB	RSP_1878	-	lipoyltransferase
461	 72.44	0	478176..479735	+	519	77462426	-	RSP_1880	-	hypothetical protein
462	 65.31	0	480233..481336	+	367	77462427	-	RSP_1882	-	ABC polyamine/opine transporter, ATPase subunit
463	 65.11	0	481391..482482	+	363	77462428	-	RSP_1883	-	ABC polyamine/opine transporter, periplasmic substrate-binding protein
464	 68.24	0	482534..483808	+	424	77462429	-	RSP_1884	-	ABC polyamine/opine transporter, inner membrane subunit
465	 65.79	0	483887..484795	+	302	77462430	-	RSP_1886	-	ABC polyamine/opine transporter, inner membrane subunit
466	 57.14	-2	484975..485142	+	55	77462431	rpmG	RSP_1887	-	50S ribosomal protein L33
467	 74.07	+1	485217..485702	+	161	77462432	-	RSP_1888	-	acetyltransferase
468	 63.56	-1	485753..486493	-	246	77462433	-	RSP_1889	-	hypothetical protein
469	 74.46	+1	486624..486854	-	76	77462434	-	RSP_6024	-	hypothetical protein
470	 69.35	0	486939..487907	+	322	77462435	-	RSP_1890	-	LysR family transcriptional regulator
471	 73.12	+1	487915..488874	-	319	77462436	-	RSP_1891	-	Zinc-binding dehydrogenase
472	 64.19	-1	489235..489597	+	120	77462437	-	RSP_1892	-	XRE family transcriptional regulator
473	 70.91	0	489686..490486	+	266	77462438	-	RSP_1893	-	inositol monophosphatase family protein
474	 67.18	0	490925..491314	+	129	77462439	-	RSP_1894	-	hypothetical protein
475	 69.33	0	491614..493977	+	787	77462440	-	RSP_1895	-	small-conductance mechanosensitive ion channel
476	 70.81	0	494021..495322	-	433	77462441	-	RSP_1896	-	guanine deaminase
477	 68.91	0	495484..496818	+	444	77462442	mgtE	RSP_1897	-	Mg/Co/Ni transporter, MgtE
478	 73.69	+1	496815..497369	+	184	77462443	-	RSP_1898	-	putative 5-formyltetrahydrofolate cyclo-ligase
479	 64.53	-1	497371..498681	-	436	77462444	-	RSP_1899	-	ATPase
480	 69.64	0	498697..499200	-	167	77462445	-	RSP_1900	-	hypothetical protein
481	 68.20	0	499203..500051	-	282	77462446	-	RSP_1901	-	TPR repeat-containing protein
482	 71.08	0	500089..500655	-	188	77462447	-	RSP_1902	-	TPR repeat-containing protein
483	 66.77	0	500662..501642	-	326	77462448	-	RSP_1903	-	putative Flp pilus assembly protein TadC
484	 64.91	0	501646..502614	-	322	77462449	-	RSP_1904	-	putative Flp pilus assembly protein TadB
485	 68.18	0	502622..504079	-	485	77462450	-	RSP_1905	-	putative Flp pilus assembly protein ATPase CpaF
486	 67.37	0	504100..505371	-	423	77462451	-	RSP_1907	-	putative Flp pilus assembly protein ATPase CpaE
487	 69.78	0	505718..506359	-	213	77462452	-	RSP_1908	-	OmpA/MotB family outer membrane protein
488	 67.10	0	506365..507750	-	461	77462453	-	RSP_1909	-	Outer membrane general secretion pathway protein, secretin
489	 67.39	0	508004..508828	-	274	77462454	-	RSP_1910	-	putative Flp pilus assembly protein CpaB
490	 62.75	-1	508898..509101	-	67	77462455	-	RSP_6219	-	hypothetical protein
491	 63.52	-1	509291..509608	-	105	77462456	-	RSP_6025	-	hypothetical protein
492	 72.95	+1	509868..510758	+	296	77462457	-	RSP_1911	-	soluble lytic murein transglycosylase
493	 71.67	0	510817..511056	-	79	77462458	-	RSP_1912	-	hypothetical protein
494	 66.03	0	511100..511729	-	209	77462459	-	RSP_1913	-	butyryl-CoA:acetate CoA transferase
495	 66.81	0	511745..512443	-	232	77462460	-	RSP_1914	-	3-ketoacid CoA transferase alpha subunit
496	 71.32	0	512992..513915	+	307	77462461	-	RSP_1915	-	LysR family transcriptional regulator
497	 71.46	0	514055..514576	-	173	77462462	-	RSP_6026	-	putative acetyltransferase
498	 68.00	0	514570..515169	-	199	77462463	-	RSP_1916	-	2-hydroxychromene-2-carboxylate isomerase
499	 68.21	0	515166..515684	-	172	77462464	-	RSP_1917	-	hypothetical protein
500	 69.43	0	515824..516801	+	325	77462465	-	RSP_1918	-	alpha/beta hydrolase
501	 65.93	0	516829..517374	+	181	77462466	-	RSP_1919	-	hypothetical protein
502	 72.06	0	517418..518233	-	271	77462467	-	RSP_1920	-	pyridoxal kinase
503	 71.07	0	518284..518964	-	226	77462468	-	RSP_1921	-	MOSC domain-containing protein
504	 75.44	+1	519356..520768	+	470	77462469	-	RSP_1922	-	GntR family transcriptional regulator
505	 69.81	0	520770..521756	-	328	77462470	bioB	RSP_1923	-	biotin synthase
506	 71.69	0	521753..522190	-	145	77462471	-	RSP_1924	-	BioY family protein
507	 68.16	0	522394..523062	-	222	77462472	-	RSP_1925	-	GntR family transcriptional regulator
508	 70.81	0	523580..524521	+	313	77462473	-	RSP_1926	-	tRNA-dihydrouridine synthase A
509	 69.72	0	524602..525420	+	272	77462474	-	RSP_1927	-	hypothetical protein
510	 67.87	0	525735..527225	-	496	77462475	dnaB	RSP_1928	-	replicative DNA helicase
511	 67.38	0	527494..528192	-	232	77462476	pyrE	RSP_1929	-	orotate phosphoribosyltransferase
512	 71.66	0	528235..529275	-	346	77462477	pyrC	RSP_1930	-	dihydroorotase
513	 70.05	0	529420..530334	+	304	77462478	-	RSP_1931	-	AAA family ATPase
514	 72.35	0	530439..531635	+	398	77462479	-	RSP_1932	-	hypothetical protein
515	 69.81	0	531708..532184	+	158	77462480	-	RSP_6241	-	hypothetical protein
516	 71.51	0	532399..534504	+	701	77462481	-	RSP_1933	-	OmpA/MotB family outer membrane protein
517	 73.63	+1	534620..535021	+	133	77462482	-	RSP_1934	-	sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis
518	 73.07	+1	535062..535592	+	176	77462483	-	RSP_1935	-	sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis
519	 73.03	+1	535592..536596	+	334	77462484	-	RSP_1936	-	molybdopterin biosynthesis protein
520	 62.05	-1	536668..537252	-	194	77462485	infC	RSP_1937	-	translation initiation factor IF-3
521	 73.80	+1	537327..538013	+	228	77462486	-	RSP_1938	-	hypothetical protein
522	 64.19	-1	538127..538933	-	268	77462487	-	RSP_1939	-	NADPH-ferredoxin reductase
523	 67.16	0	538996..539403	-	135	77462488	-	RSP_1940	-	hypothetical protein
524	 67.36	0	539400..540116	-	238	77462489	cysH	RSP_1941	-	phosphoadenosine phosphosulfate reductase
525	 67.74	0	540145..541815	-	556	77462490	-	RSP_1942	-	sulfite/nitrite reductase hemoprotein subunit
526	 70.26	0	541842..542147	-	101	77462491	-	RSP_1943	-	hypothetical protein
527	 72.94	+1	542144..542908	-	254	77462492	-	RSP_1944	-	uroporphyrinogen-III C-methyltransferase
528	 65.37	0	543051..543512	+	153	77462493	-	RSP_1945	-	AsnC family transcriptional regulator
529	 71.32	0	543683..544864	-	393	77462494	-	RSP_1946	-	cytochrome P450 hydroxylase
530	 71.27	0	545193..545930	-	245	77462495	cbbJ	RSP_1947	-	triosephosphate isomerase
531	 62.18	-1	546042..546398	-	118	77462496	-	RSP_1948	-	hypothetical protein
532	 64.74	0	546482..546844	-	120	77462497	-	RSP_1949	-	hypothetical protein
533	 63.93	-1	547132..547935	+	267	77462498	-	RSP_1950	-	hypothetical protein
534	 61.25	-1	548205..548555	-	116	77462499	-	RSP_1951	-	hypothetical protein
535	 61.97	-1	548589..548822	-	77	77462500	-	RSP_1952	-	cold-shock DNA-binding protein family protein
536	 65.05	0	549413..550153	-	246	77462501	-	RSP_1953	-	Crp/FNR family transcriptional regulator
537	 67.79	0	550280..550546	+	88	77462502	-	RSP_1954	-	hypothetical protein
538	 67.55	0	550603..551391	+	262	77462503	-	RSP_1955	-	hypothetical protein
539	 64.00	-1	551878..552252	+	124	77462504	-	RSP_1956	-	hypothetical protein
540	 63.14	-1	552259..552570	-	103	77462505	-	RSP_1957	-	hypothetical protein
541	 59.52	-2	554166..554417	+	83	77462506	-	RSP_1961	-	hypothetical protein
542	 55.48	-2	554720..555148	+	142	77462507	-	RSP_1962	-	hypothetical protein
543	 49.32	-2	555305..555742	-	145	77462508	-	RSP_1963	-	hypothetical protein
544	 65.29	0	555770..556060	-	96	77462509	-	RSP_1964	-	hypothetical protein
545	 61.88	-1	556550..557740	+	396	77462510	-	RSP_1965	-	putative membrane fusion protein family member
546	 63.67	-1	558385..558684	+	99	77462511	-	RSP_1967	-	hypothetical protein
547	 63.47	-1	558661..559536	-	291	77462512	-	RSP_1966	-	ISSod13, transposase
548	 67.23	0	559600..560490	+	296	77462513	-	RSP_1968	-	integrase/recombinase
549	 69.72	0	560737..561783	+	348	77462514	purM	RSP_1969	-	phosphoribosylaminoimidazole synthetase
550	 73.04	+1	561822..562370	+	182	77462515	-	RSP_1970	-	phosphoribosylglycinamide formyltransferase
551	 66.93	0	562467..563624	+	385	77462516	rnd	RSP_1971	-	ribonuclease D
552	 72.19	0	563661..564113	-	150	77462517	-	RSP_1972	-	hypothetical protein
553	 68.07	0	564243..564671	+	142	77462518	-	RSP_1973	-	SufE protein
554	 62.07	-1	564694..565041	-	115	77462519	-	RSP_1974	-	hypothetical protein
555	 70.23	0	565102..566898	-	598	77462520	-	RSP_1975	-	aminopeptidase P
556	 68.71	0	566898..568757	-	619	77462521	cobT	RSP_1976	-	aerobic cobalt chelatase, CobT subunit
557	 73.33	+1	568809..569138	-	109	77462522	-	RSP_6027	-	hypothetical protein
558	 73.94	+1	569140..569469	-	109	77462523	-	RSP_6028	-	hypothetical protein
559	 63.29	-1	569466..570560	-	364	77462524	cobS	RSP_1977	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.