IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
438	 67.52	0	453318..453788	+	156	77462403	-	RSP_1857	-	hypothetical protein
439	 69.48	0	453792..455885	+	697	77462404	glyS	RSP_1858	-	glycyl-tRNA synthetase subunit beta
440	 71.50	0	456004..458550	+	848	77462405	ppdK	RSP_1859	-	pyruvate phosphate dikinase
441	 72.34	0	458768..459490	+	240	77462406	-	RSP_1860	-	hypothetical protein
442	 72.09	0	459590..460492	+	300	77462407	-	RSP_1861	-	dihydroneopterin aldolase
443	 73.31	+1	460538..461575	+	345	77462408	-	RSP_1862	-	dihydropteroate synthase
444	 71.28	0	461572..462915	+	447	77462409	-	RSP_1863	-	phosphoglucosamine mutase
445	 67.58	0	463014..463232	+	72	77462410	-	RSP_1864	-	hypothetical protein
446	 63.64	-1	463305..464327	-	340	77462411	-	RSP_1865	-	ketol-acid reductoisomerase
447	 69.30	0	464457..464912	+	151	77462412	-	RSP_1866	-	AsnC family transcriptional regulator
448	 72.11	0	464909..465367	+	152	77462413	-	RSP_1867	-	AsnC family transcriptional regulator
449	 70.74	0	465545..466672	+	375	77462414	-	RSP_1868	-	serine-pyruvate aminotransferase
450	 72.17	0	466677..467876	-	399	77462415	-	RSP_1869	-	2-octaprenyl-6-methoxyphenyl hydroxylase
451	 63.64	-1	467928..468158	-	76	77462416	-	RSP_6022	-	hypothetical protein
452	 68.36	0	468239..468886	-	215	77462417	-	RSP_1870	-	hydrolase
453	 69.97	0	469002..469637	+	211	77462418	-	RSP_1871	-	GntR family transcriptional regulator
454	 72.12	0	469645..471459	-	604	77462419	-	RSP_1872	-	glycosyl transferase family protein
455	 69.61	0	471693..472574	-	293	77462420	-	RSP_1873	-	hypothetical protein
456	 69.85	0	472656..473819	-	387	77462421	carA	RSP_1874	-	carbamoyl phosphate synthase small subunit
457	 67.97	0	473997..474455	+	152	77462422	-	RSP_1875	-	hypothetical protein
458	 71.00	0	474764..475294	-	176	77462423	-	RSP_1876	-	hypothetical protein
459	 63.32	-1	475308..477008	-	566	77462424	coxI	RSP_1877	-	cytochrome c oxidase, aa3 type, subunit I
460	 70.47	0	477423..478079	-	218	77462425	lipB	RSP_1878	-	lipoyltransferase
461	 72.44	0	478176..479735	+	519	77462426	-	RSP_1880	-	hypothetical protein
462	 65.31	0	480233..481336	+	367	77462427	-	RSP_1882	-	ABC polyamine/opine transporter, ATPase subunit
463	 65.11	0	481391..482482	+	363	77462428	-	RSP_1883	-	ABC polyamine/opine transporter, periplasmic substrate-binding protein
464	 68.24	0	482534..483808	+	424	77462429	-	RSP_1884	-	ABC polyamine/opine transporter, inner membrane subunit
465	 65.79	0	483887..484795	+	302	77462430	-	RSP_1886	-	ABC polyamine/opine transporter, inner membrane subunit
466	 57.14	-2	484975..485142	+	55	77462431	rpmG	RSP_1887	-	50S ribosomal protein L33
467	 74.07	+1	485217..485702	+	161	77462432	-	RSP_1888	-	acetyltransferase
468	 63.56	-1	485753..486493	-	246	77462433	-	RSP_1889	-	hypothetical protein
469	 74.46	+1	486624..486854	-	76	77462434	-	RSP_6024	-	hypothetical protein
470	 69.35	0	486939..487907	+	322	77462435	-	RSP_1890	-	LysR family transcriptional regulator
471	 73.12	+1	487915..488874	-	319	77462436	-	RSP_1891	-	Zinc-binding dehydrogenase
472	 64.19	-1	489235..489597	+	120	77462437	-	RSP_1892	-	XRE family transcriptional regulator
473	 70.91	0	489686..490486	+	266	77462438	-	RSP_1893	-	inositol monophosphatase family protein
474	 67.18	0	490925..491314	+	129	77462439	-	RSP_1894	-	hypothetical protein
475	 69.33	0	491614..493977	+	787	77462440	-	RSP_1895	-	small-conductance mechanosensitive ion channel
476	 70.81	0	494021..495322	-	433	77462441	-	RSP_1896	-	guanine deaminase
477	 68.91	0	495484..496818	+	444	77462442	mgtE	RSP_1897	-	Mg/Co/Ni transporter, MgtE
478	 73.69	+1	496815..497369	+	184	77462443	-	RSP_1898	-	putative 5-formyltetrahydrofolate cyclo-ligase
479	 64.53	-1	497371..498681	-	436	77462444	-	RSP_1899	-	ATPase
480	 69.64	0	498697..499200	-	167	77462445	-	RSP_1900	-	hypothetical protein
481	 68.20	0	499203..500051	-	282	77462446	-	RSP_1901	-	TPR repeat-containing protein
482	 71.08	0	500089..500655	-	188	77462447	-	RSP_1902	-	TPR repeat-containing protein
483	 66.77	0	500662..501642	-	326	77462448	-	RSP_1903	-	putative Flp pilus assembly protein TadC
484	 64.91	0	501646..502614	-	322	77462449	-	RSP_1904	-	putative Flp pilus assembly protein TadB
485	 68.18	0	502622..504079	-	485	77462450	-	RSP_1905	-	putative Flp pilus assembly protein ATPase CpaF
486	 67.37	0	504100..505371	-	423	77462451	-	RSP_1907	-	putative Flp pilus assembly protein ATPase CpaE
487	 69.78	0	505718..506359	-	213	77462452	-	RSP_1908	-	OmpA/MotB family outer membrane protein
488	 67.10	0	506365..507750	-	461	77462453	-	RSP_1909	-	Outer membrane general secretion pathway protein, secretin
489	 67.39	0	508004..508828	-	274	77462454	-	RSP_1910	-	putative Flp pilus assembly protein CpaB
490	 62.75	-1	508898..509101	-	67	77462455	-	RSP_6219	-	hypothetical protein
491	 63.52	-1	509291..509608	-	105	77462456	-	RSP_6025	-	hypothetical protein
492	 72.95	+1	509868..510758	+	296	77462457	-	RSP_1911	-	soluble lytic murein transglycosylase
493	 71.67	0	510817..511056	-	79	77462458	-	RSP_1912	-	hypothetical protein
494	 66.03	0	511100..511729	-	209	77462459	-	RSP_1913	-	butyryl-CoA:acetate CoA transferase
495	 66.81	0	511745..512443	-	232	77462460	-	RSP_1914	-	3-ketoacid CoA transferase alpha subunit
496	 71.32	0	512992..513915	+	307	77462461	-	RSP_1915	-	LysR family transcriptional regulator
497	 71.46	0	514055..514576	-	173	77462462	-	RSP_6026	-	putative acetyltransferase
498	 68.00	0	514570..515169	-	199	77462463	-	RSP_1916	-	2-hydroxychromene-2-carboxylate isomerase
499	 68.21	0	515166..515684	-	172	77462464	-	RSP_1917	-	hypothetical protein
500	 69.43	0	515824..516801	+	325	77462465	-	RSP_1918	-	alpha/beta hydrolase
501	 65.93	0	516829..517374	+	181	77462466	-	RSP_1919	-	hypothetical protein
502	 72.06	0	517418..518233	-	271	77462467	-	RSP_1920	-	pyridoxal kinase
503	 71.07	0	518284..518964	-	226	77462468	-	RSP_1921	-	MOSC domain-containing protein
504	 75.44	+1	519356..520768	+	470	77462469	-	RSP_1922	-	GntR family transcriptional regulator
505	 69.81	0	520770..521756	-	328	77462470	bioB	RSP_1923	-	biotin synthase
506	 71.69	0	521753..522190	-	145	77462471	-	RSP_1924	-	BioY family protein
507	 68.16	0	522394..523062	-	222	77462472	-	RSP_1925	-	GntR family transcriptional regulator
508	 70.81	0	523580..524521	+	313	77462473	-	RSP_1926	-	tRNA-dihydrouridine synthase A
509	 69.72	0	524602..525420	+	272	77462474	-	RSP_1927	-	hypothetical protein
510	 67.87	0	525735..527225	-	496	77462475	dnaB	RSP_1928	-	replicative DNA helicase
511	 67.38	0	527494..528192	-	232	77462476	pyrE	RSP_1929	-	orotate phosphoribosyltransferase
512	 71.66	0	528235..529275	-	346	77462477	pyrC	RSP_1930	-	dihydroorotase
513	 70.05	0	529420..530334	+	304	77462478	-	RSP_1931	-	AAA family ATPase
514	 72.35	0	530439..531635	+	398	77462479	-	RSP_1932	-	hypothetical protein
515	 69.81	0	531708..532184	+	158	77462480	-	RSP_6241	-	hypothetical protein
516	 71.51	0	532399..534504	+	701	77462481	-	RSP_1933	-	OmpA/MotB family outer membrane protein
517	 73.63	+1	534620..535021	+	133	77462482	-	RSP_1934	-	sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis
518	 73.07	+1	535062..535592	+	176	77462483	-	RSP_1935	-	sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis
519	 73.03	+1	535592..536596	+	334	77462484	-	RSP_1936	-	molybdopterin biosynthesis protein
520	 62.05	-1	536668..537252	-	194	77462485	infC	RSP_1937	-	translation initiation factor IF-3
521	 73.80	+1	537327..538013	+	228	77462486	-	RSP_1938	-	hypothetical protein
522	 64.19	-1	538127..538933	-	268	77462487	-	RSP_1939	-	NADPH-ferredoxin reductase
523	 67.16	0	538996..539403	-	135	77462488	-	RSP_1940	-	hypothetical protein
524	 67.36	0	539400..540116	-	238	77462489	cysH	RSP_1941	-	phosphoadenosine phosphosulfate reductase
525	 67.74	0	540145..541815	-	556	77462490	-	RSP_1942	-	sulfite/nitrite reductase hemoprotein subunit
526	 70.26	0	541842..542147	-	101	77462491	-	RSP_1943	-	hypothetical protein
527	 72.94	+1	542144..542908	-	254	77462492	-	RSP_1944	-	uroporphyrinogen-III C-methyltransferase
528	 65.37	0	543051..543512	+	153	77462493	-	RSP_1945	-	AsnC family transcriptional regulator
529	 71.32	0	543683..544864	-	393	77462494	-	RSP_1946	-	cytochrome P450 hydroxylase
530	 71.27	0	545193..545930	-	245	77462495	cbbJ	RSP_1947	-	triosephosphate isomerase
531	 62.18	-1	546042..546398	-	118	77462496	-	RSP_1948	-	hypothetical protein
532	 64.74	0	546482..546844	-	120	77462497	-	RSP_1949	-	hypothetical protein
533	 63.93	-1	547132..547935	+	267	77462498	-	RSP_1950	-	hypothetical protein
534	 61.25	-1	548205..548555	-	116	77462499	-	RSP_1951	-	hypothetical protein
535	 61.97	-1	548589..548822	-	77	77462500	-	RSP_1952	-	cold-shock DNA-binding protein family protein
536	 65.05	0	549413..550153	-	246	77462501	-	RSP_1953	-	Crp/FNR family transcriptional regulator
537	 67.79	0	550280..550546	+	88	77462502	-	RSP_1954	-	hypothetical protein
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.