IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
401	 67.14	0	410429..412729	-	766	77462366	-	RSP_1821	-	molybdopterin-containing oxidoreductase, formate dehydrogenase
402	 70.49	0	412976..414520	+	514	77462367	-	RSP_1822	-	NH(3)-dependent NAD(+) synthetase
403	 71.79	0	414543..415088	-	181	77462368	mogA	RSP_1823	-	molybdenum cofactor biosynthesis protein
404	 73.07	+1	415379..416503	+	374	77462369	adh	RSP_1824	-	Zinc-containing alcohol dehydrogenase
405	 69.83	0	416542..417963	-	473	77462370	tldD	RSP_1825	-	microcin-processing peptidase 2
406	 66.56	0	418133..419044	+	303	77462371	coxII	RSP_1826	-	cytochrome c oxidase polypeptide II precursor (cytochrome AA3 subunit 2)
407	 67.63	0	419115..420047	+	310	77462372	cox10	RSP_1827	-	protoheme IX farnesyltransferase
408	 70.62	0	420049..420225	+	58	77462373	-	RSP_6021	-	hypothetical protein
409	 68.40	0	420222..420797	+	191	77462374	cox11	RSP_1828	-	cytochrome C oxidase assembly protein
410	 63.80	-1	420825..421625	+	266	77462375	coxIII	RSP_1829	-	cytochrome c oxidase, aa3-type, subunit III
411	 70.24	0	421826..422497	+	223	77462376	surf-1	RSP_1830	-	Surf1 protein
412	 69.26	0	422509..423894	+	461	77462377	thrC	RSP_1831	-	threonine synthase
413	 69.44	0	423891..425150	+	419	77462378	-	RSP_1832	-	M16 family peptidase
414	 71.28	0	425150..425734	+	194	77462379	-	RSP_1833	-	putative ribosomal-protein-alanine acetyltransferase
415	 69.02	0	426069..426875	+	268	77462380	-	RSP_1834	-	hypothetical protein
416	 73.21	+1	426908..428329	+	473	77462381	-	RSP_1835	-	putative FAD dependent oxidoreductase
417	 67.97	0	428458..428994	-	178	77462382	apt	RSP_1836	-	adenine phosphoribosyltransferase
418	 69.99	0	428999..429871	-	290	77462383	-	RSP_1837	-	5'-methylthioadenosine phosphorylase
419	 69.23	0	430176..430760	-	194	77462384	-	RSP_1838	-	hypothetical protein
420	 72.22	0	430841..431326	+	161	77462385	-	RSP_1839	-	GNAT family acetyltransferase
421	 73.20	+1	431545..432309	+	254	77462386	-	RSP_1840	-	hypothetical protein
422	 63.35	-1	432357..432959	-	200	77462387	-	RSP_1841	-	intracellular septation protein
423	 69.43	0	432971..433876	-	301	77462388	-	RSP_1842	-	drug/metabolite exporter (DME) family protein
424	 71.24	0	433992..435173	-	393	77462389	ftsY	RSP_1843	-	Signal recognition particle-docking protein FtsY
425	 68.92	0	435329..435727	+	132	77462390	-	RSP_1844	-	hypothetical protein
426	 74.42	+1	435848..437407	-	519	77462391	xseA	RSP_1845	-	exodeoxyribonuclease VII large subunit
427	 70.06	0	437638..437991	-	117	77462392	-	RSP_1846	-	hypothetical protein
428	 72.13	0	438151..439413	+	420	77462393	PurD	RSP_1847	-	phosphoribosylamine--glycine ligase
429	 72.04	0	439615..441141	-	508	77462394	-	RSP_1848	-	pyruvate kinase
430	 64.44	-1	441351..442610	+	419	77462395	-	RSP_1849	-	aspartate kinase
431	 68.72	0	442635..444878	+	747	77462396	ptsI	RSP_1850	-	phosphoenolpyruvate-protein phosphotransferase, PtsI(Ntr)
432	 67.33	0	445037..446251	+	404	77462397	metZ	RSP_1851	-	O-succinylhomoserine sulfhydrylase
433	 66.11	0	446347..447426	+	359	77462398	-	RSP_1852	-	putative GTP cyclohydrolase
434	 67.84	0	447477..448925	+	482	77462399	TrkH2	RSP_1853	-	potassium uptake transporter, transmembrane component, TrkH
435	 67.35	0	448968..450422	+	484	77462400	trkH3	RSP_1854	-	potassium uptake transporter, transmembrane component, TrkH
436	 73.91	+1	450492..452273	-	593	77462401	-	RSP_1855	-	hypothetical protein
437	 64.94	0	452398..453321	+	307	77462402	glyQ	RSP_1856	-	glycyl-tRNA synthetase subunit alpha
438	 67.52	0	453318..453788	+	156	77462403	-	RSP_1857	-	hypothetical protein
439	 69.48	0	453792..455885	+	697	77462404	glyS	RSP_1858	-	glycyl-tRNA synthetase subunit beta
440	 71.50	0	456004..458550	+	848	77462405	ppdK	RSP_1859	-	pyruvate phosphate dikinase
441	 72.34	0	458768..459490	+	240	77462406	-	RSP_1860	-	hypothetical protein
442	 72.09	0	459590..460492	+	300	77462407	-	RSP_1861	-	dihydroneopterin aldolase
443	 73.31	+1	460538..461575	+	345	77462408	-	RSP_1862	-	dihydropteroate synthase
444	 71.28	0	461572..462915	+	447	77462409	-	RSP_1863	-	phosphoglucosamine mutase
445	 67.58	0	463014..463232	+	72	77462410	-	RSP_1864	-	hypothetical protein
446	 63.64	-1	463305..464327	-	340	77462411	-	RSP_1865	-	ketol-acid reductoisomerase
447	 69.30	0	464457..464912	+	151	77462412	-	RSP_1866	-	AsnC family transcriptional regulator
448	 72.11	0	464909..465367	+	152	77462413	-	RSP_1867	-	AsnC family transcriptional regulator
449	 70.74	0	465545..466672	+	375	77462414	-	RSP_1868	-	serine-pyruvate aminotransferase
450	 72.17	0	466677..467876	-	399	77462415	-	RSP_1869	-	2-octaprenyl-6-methoxyphenyl hydroxylase
451	 63.64	-1	467928..468158	-	76	77462416	-	RSP_6022	-	hypothetical protein
452	 68.36	0	468239..468886	-	215	77462417	-	RSP_1870	-	hydrolase
453	 69.97	0	469002..469637	+	211	77462418	-	RSP_1871	-	GntR family transcriptional regulator
454	 72.12	0	469645..471459	-	604	77462419	-	RSP_1872	-	glycosyl transferase family protein
455	 69.61	0	471693..472574	-	293	77462420	-	RSP_1873	-	hypothetical protein
456	 69.85	0	472656..473819	-	387	77462421	carA	RSP_1874	-	carbamoyl phosphate synthase small subunit
457	 67.97	0	473997..474455	+	152	77462422	-	RSP_1875	-	hypothetical protein
458	 71.00	0	474764..475294	-	176	77462423	-	RSP_1876	-	hypothetical protein
459	 63.32	-1	475308..477008	-	566	77462424	coxI	RSP_1877	-	cytochrome c oxidase, aa3 type, subunit I
460	 70.47	0	477423..478079	-	218	77462425	lipB	RSP_1878	-	lipoyltransferase
461	 72.44	0	478176..479735	+	519	77462426	-	RSP_1880	-	hypothetical protein
462	 65.31	0	480233..481336	+	367	77462427	-	RSP_1882	-	ABC polyamine/opine transporter, ATPase subunit
463	 65.11	0	481391..482482	+	363	77462428	-	RSP_1883	-	ABC polyamine/opine transporter, periplasmic substrate-binding protein
464	 68.24	0	482534..483808	+	424	77462429	-	RSP_1884	-	ABC polyamine/opine transporter, inner membrane subunit
465	 65.79	0	483887..484795	+	302	77462430	-	RSP_1886	-	ABC polyamine/opine transporter, inner membrane subunit
466	 57.14	-2	484975..485142	+	55	77462431	rpmG	RSP_1887	-	50S ribosomal protein L33
467	 74.07	+1	485217..485702	+	161	77462432	-	RSP_1888	-	acetyltransferase
468	 63.56	-1	485753..486493	-	246	77462433	-	RSP_1889	-	hypothetical protein
469	 74.46	+1	486624..486854	-	76	77462434	-	RSP_6024	-	hypothetical protein
470	 69.35	0	486939..487907	+	322	77462435	-	RSP_1890	-	LysR family transcriptional regulator
471	 73.12	+1	487915..488874	-	319	77462436	-	RSP_1891	-	Zinc-binding dehydrogenase
472	 64.19	-1	489235..489597	+	120	77462437	-	RSP_1892	-	XRE family transcriptional regulator
473	 70.91	0	489686..490486	+	266	77462438	-	RSP_1893	-	inositol monophosphatase family protein
474	 67.18	0	490925..491314	+	129	77462439	-	RSP_1894	-	hypothetical protein
475	 69.33	0	491614..493977	+	787	77462440	-	RSP_1895	-	small-conductance mechanosensitive ion channel
476	 70.81	0	494021..495322	-	433	77462441	-	RSP_1896	-	guanine deaminase
477	 68.91	0	495484..496818	+	444	77462442	mgtE	RSP_1897	-	Mg/Co/Ni transporter, MgtE
478	 73.69	+1	496815..497369	+	184	77462443	-	RSP_1898	-	putative 5-formyltetrahydrofolate cyclo-ligase
479	 64.53	-1	497371..498681	-	436	77462444	-	RSP_1899	-	ATPase
480	 69.64	0	498697..499200	-	167	77462445	-	RSP_1900	-	hypothetical protein
481	 68.20	0	499203..500051	-	282	77462446	-	RSP_1901	-	TPR repeat-containing protein
482	 71.08	0	500089..500655	-	188	77462447	-	RSP_1902	-	TPR repeat-containing protein
483	 66.77	0	500662..501642	-	326	77462448	-	RSP_1903	-	putative Flp pilus assembly protein TadC
484	 64.91	0	501646..502614	-	322	77462449	-	RSP_1904	-	putative Flp pilus assembly protein TadB
485	 68.18	0	502622..504079	-	485	77462450	-	RSP_1905	-	putative Flp pilus assembly protein ATPase CpaF
486	 67.37	0	504100..505371	-	423	77462451	-	RSP_1907	-	putative Flp pilus assembly protein ATPase CpaE
487	 69.78	0	505718..506359	-	213	77462452	-	RSP_1908	-	OmpA/MotB family outer membrane protein
488	 67.10	0	506365..507750	-	461	77462453	-	RSP_1909	-	Outer membrane general secretion pathway protein, secretin
489	 67.39	0	508004..508828	-	274	77462454	-	RSP_1910	-	putative Flp pilus assembly protein CpaB
490	 62.75	-1	508898..509101	-	67	77462455	-	RSP_6219	-	hypothetical protein
491	 63.52	-1	509291..509608	-	105	77462456	-	RSP_6025	-	hypothetical protein
492	 72.95	+1	509868..510758	+	296	77462457	-	RSP_1911	-	soluble lytic murein transglycosylase
493	 71.67	0	510817..511056	-	79	77462458	-	RSP_1912	-	hypothetical protein
494	 66.03	0	511100..511729	-	209	77462459	-	RSP_1913	-	butyryl-CoA:acetate CoA transferase
495	 66.81	0	511745..512443	-	232	77462460	-	RSP_1914	-	3-ketoacid CoA transferase alpha subunit
496	 71.32	0	512992..513915	+	307	77462461	-	RSP_1915	-	LysR family transcriptional regulator
497	 71.46	0	514055..514576	-	173	77462462	-	RSP_6026	-	putative acetyltransferase
498	 68.00	0	514570..515169	-	199	77462463	-	RSP_1916	-	2-hydroxychromene-2-carboxylate isomerase
499	 68.21	0	515166..515684	-	172	77462464	-	RSP_1917	-	hypothetical protein
500	 69.43	0	515824..516801	+	325	77462465	-	RSP_1918	-	alpha/beta hydrolase
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.