IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
339	 63.77	-1	342569..343225	+	218	77462304	-	RSP_1760	-	hypothetical protein
340	 70.31	0	343336..345753	-	805	77462305	pheT	RSP_1761	-	phenylalanyl-tRNA synthetase subunit beta
341	 66.53	0	346143..346859	-	238	77462306	-	RSP_1762	-	hypothetical protein
342	 68.51	0	346893..347975	-	360	77462307	pheS	RSP_1763	-	phenylalanyl-tRNA synthetase, alpha subunit
343	 66.94	0	348180..348542	-	120	77462308	rplT	RSP_1764	-	50S ribosomal protein L20
344	 61.19	-1	348555..348755	-	66	77462309	rpmI	RSP_1765	-	50S ribosomal protein L35
345	 70.06	0	348871..350316	-	481	77462310	pykA	RSP_1766	-	pyruvate kinase
346	 70.46	0	350457..351194	+	245	77462311	-	RSP_1767	-	N-formylglutamate amidohydrolase
347	 66.09	0	351538..352398	-	286	77462312	-	RSP_1768	-	branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase
348	 70.92	0	352401..353363	-	320	77462313	-	RSP_1769	-	mandelate racemase/muconate lactonizing protein
349	 68.26	0	353474..354475	-	333	77462314	-	RSP_1770	-	hypothetical protein
350	 65.94	0	354743..355699	+	318	77462315	-	RSP_1771	-	beta subunit of citrate lyase
351	 67.52	0	355790..356260	-	156	77462316	-	RSP_6018	-	hypothetical protein
352	 66.77	0	356475..357434	+	319	77462317	accA	RSP_1772	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
353	 69.21	0	357431..357745	+	104	77462318	-	RSP_1773	-	DMT superfamily multidrug efflux pump
354	 70.57	0	357884..359062	+	392	77462319	-	RSP_1774	-	putative glucose dehydrogenase B
355	 70.94	0	359087..360046	-	319	77462320	-	RSP_1775	-	hypothetical protein
356	 65.82	0	360057..360527	-	156	77462321	greA	RSP_1776	-	transcription elongation factor greA
357	 65.04	0	360800..362455	+	551	77462322	-	RSP_1777	-	putative electron transfer flavoprotein-ubiquinone oxidoreductase precursor
358	 67.76	0	362979..364256	+	425	77462323	-	RSP_1778	-	TPR domain-containing protein
359	 74.19	+1	364249..365085	+	278	77462324	ispE	RSP_1779	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
360	 73.25	+1	365227..365712	+	161	77462325	-	RSP_1780	-	hypothetical protein
361	 70.99	0	365720..367177	-	485	77462326	-	RSP_1781	-	putative membrane-anchored oxidoreductase, L-sorbosone dehydrogenase
362	 69.52	0	367170..367625	-	151	77462327	-	RSP_1782	-	hypothetical protein
363	 71.51	0	367772..368866	+	364	77462328	-	RSP_1783	-	hypothetical protein
364	 68.27	0	368894..369268	-	124	77462329	-	RSP_1784	-	response regulator receiver domain-containing protein
365	 72.84	0	369641..370645	-	334	77462330	-	RSP_1785	-	LacI family transcription regulator
366	 72.82	0	370813..373329	+	838	77462331	fruB	RSP_1786	-	phosphoenolpyruvate--protein phosphotransferase
367	 74.87	+1	373326..374312	+	328	77462332	fruK	RSP_1787	-	1-phosphofructokinase
368	 72.16	0	374309..376054	+	581	77462333	fruA	RSP_1788	-	PTS system fructose-specific II BC component
369	 75.23	+1	376158..376484	-	108	77462334	-	RSP_1789	-	hypothetical protein
370	 71.36	0	376484..376909	-	141	77462335	-	RSP_1790	-	transcriptional regulator
371	 74.40	+1	376993..379215	+	740	77462336	-	RSP_1791	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
372	 69.92	0	379339..379860	-	173	77462337	-	RSP_1793	-	single-strand DNA binding protein
373	 65.85	0	380074..380688	+	204	77462338	-	RSP_1794	-	putative lytic transglycosylase
374	 68.99	0	380801..382093	-	430	77462339	serS	RSP_1795	-	seryl-tRNA synthetase
375	 68.82	0	382200..382757	-	185	77462340	sodC	RSP_1796	-	putative copper/Zinc superoxide dismutase
376	 59.63	-2	383049..383375	+	108	77462341	YajC	RSP_1797	-	protein translocase subunit yajC
377	 68.59	0	383391..385055	+	554	77462342	secD	RSP_1798	-	preprotein translocase subunit SecD
378	 63.90	-1	385065..386039	+	324	77462343	secF	RSP_1799	-	preprotein translocase subunit SecF
379	 71.47	0	386215..386568	+	117	77462344	-	RSP_1800	-	hypothetical protein
380	 73.30	+1	386636..387268	+	210	77462345	ccmA	RSP_1801	-	cytochrome c biogenesis protein CcmA
381	 71.23	0	387265..387921	+	218	77462346	ccmB	RSP_1802	-	ABC heme exporter, inner membrane subunit CcmB
382	 66.26	0	387970..388698	+	242	77462347	ccmC	RSP_1803	-	ABC heme exporter, inner membrane subunit CcmC
383	 69.75	0	388695..388856	+	53	77462348	ccmD	RSP_1804	-	Heme exporter protein D
384	 70.19	0	388849..389388	+	179	77462349	ccmG	RSP_1805	-	thiol-disulfide interchange protein
385	 66.07	0	389587..392271	-	894	161723329	-	RSP_1806	-	aconitate hydratase
386	 70.48	0	392493..393200	+	235	77462351	-	RSP_1807	-	hypothetical protein
387	 76.39	+1	393375..394433	-	352	77462352	-	RSP_6019	-	hypothetical protein
388	 65.83	0	394430..395503	-	357	77462353	trpS	RSP_1808	-	tryptophanyl-tRNA synthetase
389	 70.43	0	396284..397825	-	513	77462354	mviN	RSP_1810	-	putative virulence factor, MviN
390	 68.13	0	397822..400614	-	930	77462355	glnD	RSP_1811	-	PII uridylyl-transferase
391	 72.11	0	400598..401773	-	391	77462356	-	RSP_1812	-	hypothetical protein
392	 73.20	+1	401856..402743	+	295	77462357	-	RSP_1813	-	hypothetical protein
393	 71.19	0	402740..403093	+	117	77462358	-	RSP_1814	-	hypothetical protein
394	 65.93	0	403146..404096	+	316	77462359	gshB	RSP_1815	-	glutathione synthetase
395	 73.03	+1	404461..405999	-	512	77462360	-	RSP_1816	-	Mg chelatase-related protein
396	 70.89	0	406088..406324	-	78	77462361	-	RSP_1817	-	hypothetical protein
397	 69.61	0	406331..408643	-	770	77462362	feoB	RSP_1818	-	Fe2+ transport system protein B
398	 71.67	0	408640..408879	-	79	77462363	feoA1	RSP_1819	-	ferrous iron transport protein A
399	 67.07	0	408886..409134	-	82	77462364	feoA2	RSP_6020	-	ferrous iron transport protein A
400	 64.51	-1	409736..410245	-	169	77462365	-	RSP_1820	-	hypothetical protein
401	 67.14	0	410429..412729	-	766	77462366	-	RSP_1821	-	molybdopterin-containing oxidoreductase, formate dehydrogenase
402	 70.49	0	412976..414520	+	514	77462367	-	RSP_1822	-	NH(3)-dependent NAD(+) synthetase
403	 71.79	0	414543..415088	-	181	77462368	mogA	RSP_1823	-	molybdenum cofactor biosynthesis protein
404	 73.07	+1	415379..416503	+	374	77462369	adh	RSP_1824	-	Zinc-containing alcohol dehydrogenase
405	 69.83	0	416542..417963	-	473	77462370	tldD	RSP_1825	-	microcin-processing peptidase 2
406	 66.56	0	418133..419044	+	303	77462371	coxII	RSP_1826	-	cytochrome c oxidase polypeptide II precursor (cytochrome AA3 subunit 2)
407	 67.63	0	419115..420047	+	310	77462372	cox10	RSP_1827	-	protoheme IX farnesyltransferase
408	 70.62	0	420049..420225	+	58	77462373	-	RSP_6021	-	hypothetical protein
409	 68.40	0	420222..420797	+	191	77462374	cox11	RSP_1828	-	cytochrome C oxidase assembly protein
410	 63.80	-1	420825..421625	+	266	77462375	coxIII	RSP_1829	-	cytochrome c oxidase, aa3-type, subunit III
411	 70.24	0	421826..422497	+	223	77462376	surf-1	RSP_1830	-	Surf1 protein
412	 69.26	0	422509..423894	+	461	77462377	thrC	RSP_1831	-	threonine synthase
413	 69.44	0	423891..425150	+	419	77462378	-	RSP_1832	-	M16 family peptidase
414	 71.28	0	425150..425734	+	194	77462379	-	RSP_1833	-	putative ribosomal-protein-alanine acetyltransferase
415	 69.02	0	426069..426875	+	268	77462380	-	RSP_1834	-	hypothetical protein
416	 73.21	+1	426908..428329	+	473	77462381	-	RSP_1835	-	putative FAD dependent oxidoreductase
417	 67.97	0	428458..428994	-	178	77462382	apt	RSP_1836	-	adenine phosphoribosyltransferase
418	 69.99	0	428999..429871	-	290	77462383	-	RSP_1837	-	5'-methylthioadenosine phosphorylase
419	 69.23	0	430176..430760	-	194	77462384	-	RSP_1838	-	hypothetical protein
420	 72.22	0	430841..431326	+	161	77462385	-	RSP_1839	-	GNAT family acetyltransferase
421	 73.20	+1	431545..432309	+	254	77462386	-	RSP_1840	-	hypothetical protein
422	 63.35	-1	432357..432959	-	200	77462387	-	RSP_1841	-	intracellular septation protein
423	 69.43	0	432971..433876	-	301	77462388	-	RSP_1842	-	drug/metabolite exporter (DME) family protein
424	 71.24	0	433992..435173	-	393	77462389	ftsY	RSP_1843	-	Signal recognition particle-docking protein FtsY
425	 68.92	0	435329..435727	+	132	77462390	-	RSP_1844	-	hypothetical protein
426	 74.42	+1	435848..437407	-	519	77462391	xseA	RSP_1845	-	exodeoxyribonuclease VII large subunit
427	 70.06	0	437638..437991	-	117	77462392	-	RSP_1846	-	hypothetical protein
428	 72.13	0	438151..439413	+	420	77462393	PurD	RSP_1847	-	phosphoribosylamine--glycine ligase
429	 72.04	0	439615..441141	-	508	77462394	-	RSP_1848	-	pyruvate kinase
430	 64.44	-1	441351..442610	+	419	77462395	-	RSP_1849	-	aspartate kinase
431	 68.72	0	442635..444878	+	747	77462396	ptsI	RSP_1850	-	phosphoenolpyruvate-protein phosphotransferase, PtsI(Ntr)
432	 67.33	0	445037..446251	+	404	77462397	metZ	RSP_1851	-	O-succinylhomoserine sulfhydrylase
433	 66.11	0	446347..447426	+	359	77462398	-	RSP_1852	-	putative GTP cyclohydrolase
434	 67.84	0	447477..448925	+	482	77462399	TrkH2	RSP_1853	-	potassium uptake transporter, transmembrane component, TrkH
435	 67.35	0	448968..450422	+	484	77462400	trkH3	RSP_1854	-	potassium uptake transporter, transmembrane component, TrkH
436	 73.91	+1	450492..452273	-	593	77462401	-	RSP_1855	-	hypothetical protein
437	 64.94	0	452398..453321	+	307	77462402	glyQ	RSP_1856	-	glycyl-tRNA synthetase subunit alpha
438	 67.52	0	453318..453788	+	156	77462403	-	RSP_1857	-	hypothetical protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.