IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
315	 67.74	0	319009..319662	+	217	77462280	adk	RSP_1736	-	adenylate kinase
316	 64.50	-1	319837..320205	+	122	77462281	rpsM	RSP_1737	-	30S ribosomal protein S13
317	 65.90	0	320219..320608	+	129	77462282	rpsK	RSP_1738	-	30S ribosomal protein S11
318	 62.73	-1	320724..321740	+	338	77462283	rpoA	RSP_1739	-	DNA-directed RNA polymerase subunit alpha
319	 67.14	0	321841..322260	+	139	77462284	rplQ	RSP_1740	-	50S ribosomal protein L17
320	 61.27	-1	322519..323130	+	203	77462285	-	RSP_1741	-	LuxR family protein
321	 70.56	0	323186..324571	+	461	77462286	-	RSP_1742	-	serine protease
322	 69.10	0	324610..325923	+	437	77462287	-	RSP_1743	-	recombination factor protein RarA
323	 67.20	0	325955..326329	+	124	77462288	-	RSP_1744	-	camphor resistance protein CrcB
324	 67.82	0	326326..327366	+	346	77462289	-	RSP_1745	-	ribosomal large subunit pseudouridine synthase C
325	 70.48	0	327366..328073	+	235	77462290	-	RSP_1746	-	hypothetical protein
326	 67.06	0	328300..329316	+	338	77462291	bztA	RSP_1747	-	ABC glutamate/glutamine/aspartate/asparagine transporter, periplasmic substrate-binding protein
327	 65.16	0	329465..330727	+	420	77462292	bztB	RSP_1748	-	ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztB
328	 67.27	0	330729..332057	+	442	77462293	bztC	RSP_1749	-	ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztC
329	 62.48	-1	332070..332858	+	262	77462294	bztD	RSP_1750	-	ABC glutamate/glutamine/aspartate/asparagine transporter, ATPase subunit bztD
330	 65.85	0	333068..333436	+	122	77462295	-	RSP_1751	-	putative 2Fe-2S ferredoxin protein
331	 66.83	0	333745..334950	+	401	77462296	-	RSP_1752	-	putative creatinase
332	 69.98	0	335207..337378	+	723	77462297	-	RSP_1753	-	hypothetical protein
333	 69.01	0	337757..338566	+	269	77462298	-	RSP_1754	-	hypothetical protein
334	 67.25	0	338612..338953	-	113	77462299	-	RSP_1755	-	hypothetical protein
335	 70.38	0	339118..339951	+	277	77462300	panB	RSP_1756	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
336	 71.07	0	339951..340790	+	279	77462301	panC	RSP_1757	-	pantothenate synthetase
337	 70.98	0	340889..342208	-	439	77462302	-	RSP_1758	-	succinyl-diaminopimelate desuccinylase
338	 58.89	-2	342292..342561	+	89	77462303	-	RSP_1759	-	hypothetical protein
339	 63.77	-1	342569..343225	+	218	77462304	-	RSP_1760	-	hypothetical protein
340	 70.31	0	343336..345753	-	805	77462305	pheT	RSP_1761	-	phenylalanyl-tRNA synthetase subunit beta
341	 66.53	0	346143..346859	-	238	77462306	-	RSP_1762	-	hypothetical protein
342	 68.51	0	346893..347975	-	360	77462307	pheS	RSP_1763	-	phenylalanyl-tRNA synthetase, alpha subunit
343	 66.94	0	348180..348542	-	120	77462308	rplT	RSP_1764	-	50S ribosomal protein L20
344	 61.19	-1	348555..348755	-	66	77462309	rpmI	RSP_1765	-	50S ribosomal protein L35
345	 70.06	0	348871..350316	-	481	77462310	pykA	RSP_1766	-	pyruvate kinase
346	 70.46	0	350457..351194	+	245	77462311	-	RSP_1767	-	N-formylglutamate amidohydrolase
347	 66.09	0	351538..352398	-	286	77462312	-	RSP_1768	-	branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase
348	 70.92	0	352401..353363	-	320	77462313	-	RSP_1769	-	mandelate racemase/muconate lactonizing protein
349	 68.26	0	353474..354475	-	333	77462314	-	RSP_1770	-	hypothetical protein
350	 65.94	0	354743..355699	+	318	77462315	-	RSP_1771	-	beta subunit of citrate lyase
351	 67.52	0	355790..356260	-	156	77462316	-	RSP_6018	-	hypothetical protein
352	 66.77	0	356475..357434	+	319	77462317	accA	RSP_1772	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
353	 69.21	0	357431..357745	+	104	77462318	-	RSP_1773	-	DMT superfamily multidrug efflux pump
354	 70.57	0	357884..359062	+	392	77462319	-	RSP_1774	-	putative glucose dehydrogenase B
355	 70.94	0	359087..360046	-	319	77462320	-	RSP_1775	-	hypothetical protein
356	 65.82	0	360057..360527	-	156	77462321	greA	RSP_1776	-	transcription elongation factor greA
357	 65.04	0	360800..362455	+	551	77462322	-	RSP_1777	-	putative electron transfer flavoprotein-ubiquinone oxidoreductase precursor
358	 67.76	0	362979..364256	+	425	77462323	-	RSP_1778	-	TPR domain-containing protein
359	 74.19	+1	364249..365085	+	278	77462324	ispE	RSP_1779	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
360	 73.25	+1	365227..365712	+	161	77462325	-	RSP_1780	-	hypothetical protein
361	 70.99	0	365720..367177	-	485	77462326	-	RSP_1781	-	putative membrane-anchored oxidoreductase, L-sorbosone dehydrogenase
362	 69.52	0	367170..367625	-	151	77462327	-	RSP_1782	-	hypothetical protein
363	 71.51	0	367772..368866	+	364	77462328	-	RSP_1783	-	hypothetical protein
364	 68.27	0	368894..369268	-	124	77462329	-	RSP_1784	-	response regulator receiver domain-containing protein
365	 72.84	0	369641..370645	-	334	77462330	-	RSP_1785	-	LacI family transcription regulator
366	 72.82	0	370813..373329	+	838	77462331	fruB	RSP_1786	-	phosphoenolpyruvate--protein phosphotransferase
367	 74.87	+1	373326..374312	+	328	77462332	fruK	RSP_1787	-	1-phosphofructokinase
368	 72.16	0	374309..376054	+	581	77462333	fruA	RSP_1788	-	PTS system fructose-specific II BC component
369	 75.23	+1	376158..376484	-	108	77462334	-	RSP_1789	-	hypothetical protein
370	 71.36	0	376484..376909	-	141	77462335	-	RSP_1790	-	transcriptional regulator
371	 74.40	+1	376993..379215	+	740	77462336	-	RSP_1791	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
372	 69.92	0	379339..379860	-	173	77462337	-	RSP_1793	-	single-strand DNA binding protein
373	 65.85	0	380074..380688	+	204	77462338	-	RSP_1794	-	putative lytic transglycosylase
374	 68.99	0	380801..382093	-	430	77462339	serS	RSP_1795	-	seryl-tRNA synthetase
375	 68.82	0	382200..382757	-	185	77462340	sodC	RSP_1796	-	putative copper/Zinc superoxide dismutase
376	 59.63	-2	383049..383375	+	108	77462341	YajC	RSP_1797	-	protein translocase subunit yajC
377	 68.59	0	383391..385055	+	554	77462342	secD	RSP_1798	-	preprotein translocase subunit SecD
378	 63.90	-1	385065..386039	+	324	77462343	secF	RSP_1799	-	preprotein translocase subunit SecF
379	 71.47	0	386215..386568	+	117	77462344	-	RSP_1800	-	hypothetical protein
380	 73.30	+1	386636..387268	+	210	77462345	ccmA	RSP_1801	-	cytochrome c biogenesis protein CcmA
381	 71.23	0	387265..387921	+	218	77462346	ccmB	RSP_1802	-	ABC heme exporter, inner membrane subunit CcmB
382	 66.26	0	387970..388698	+	242	77462347	ccmC	RSP_1803	-	ABC heme exporter, inner membrane subunit CcmC
383	 69.75	0	388695..388856	+	53	77462348	ccmD	RSP_1804	-	Heme exporter protein D
384	 70.19	0	388849..389388	+	179	77462349	ccmG	RSP_1805	-	thiol-disulfide interchange protein
385	 66.07	0	389587..392271	-	894	161723329	-	RSP_1806	-	aconitate hydratase
386	 70.48	0	392493..393200	+	235	77462351	-	RSP_1807	-	hypothetical protein
387	 76.39	+1	393375..394433	-	352	77462352	-	RSP_6019	-	hypothetical protein
388	 65.83	0	394430..395503	-	357	77462353	trpS	RSP_1808	-	tryptophanyl-tRNA synthetase
389	 70.43	0	396284..397825	-	513	77462354	mviN	RSP_1810	-	putative virulence factor, MviN
390	 68.13	0	397822..400614	-	930	77462355	glnD	RSP_1811	-	PII uridylyl-transferase
391	 72.11	0	400598..401773	-	391	77462356	-	RSP_1812	-	hypothetical protein
392	 73.20	+1	401856..402743	+	295	77462357	-	RSP_1813	-	hypothetical protein
393	 71.19	0	402740..403093	+	117	77462358	-	RSP_1814	-	hypothetical protein
394	 65.93	0	403146..404096	+	316	77462359	gshB	RSP_1815	-	glutathione synthetase
395	 73.03	+1	404461..405999	-	512	77462360	-	RSP_1816	-	Mg chelatase-related protein
396	 70.89	0	406088..406324	-	78	77462361	-	RSP_1817	-	hypothetical protein
397	 69.61	0	406331..408643	-	770	77462362	feoB	RSP_1818	-	Fe2+ transport system protein B
398	 71.67	0	408640..408879	-	79	77462363	feoA1	RSP_1819	-	ferrous iron transport protein A
399	 67.07	0	408886..409134	-	82	77462364	feoA2	RSP_6020	-	ferrous iron transport protein A
400	 64.51	-1	409736..410245	-	169	77462365	-	RSP_1820	-	hypothetical protein
401	 67.14	0	410429..412729	-	766	77462366	-	RSP_1821	-	molybdopterin-containing oxidoreductase, formate dehydrogenase
402	 70.49	0	412976..414520	+	514	77462367	-	RSP_1822	-	NH(3)-dependent NAD(+) synthetase
403	 71.79	0	414543..415088	-	181	77462368	mogA	RSP_1823	-	molybdenum cofactor biosynthesis protein
404	 73.07	+1	415379..416503	+	374	77462369	adh	RSP_1824	-	Zinc-containing alcohol dehydrogenase
405	 69.83	0	416542..417963	-	473	77462370	tldD	RSP_1825	-	microcin-processing peptidase 2
406	 66.56	0	418133..419044	+	303	77462371	coxII	RSP_1826	-	cytochrome c oxidase polypeptide II precursor (cytochrome AA3 subunit 2)
407	 67.63	0	419115..420047	+	310	77462372	cox10	RSP_1827	-	protoheme IX farnesyltransferase
408	 70.62	0	420049..420225	+	58	77462373	-	RSP_6021	-	hypothetical protein
409	 68.40	0	420222..420797	+	191	77462374	cox11	RSP_1828	-	cytochrome C oxidase assembly protein
410	 63.80	-1	420825..421625	+	266	77462375	coxIII	RSP_1829	-	cytochrome c oxidase, aa3-type, subunit III
411	 70.24	0	421826..422497	+	223	77462376	surf-1	RSP_1830	-	Surf1 protein
412	 69.26	0	422509..423894	+	461	77462377	thrC	RSP_1831	-	threonine synthase
413	 69.44	0	423891..425150	+	419	77462378	-	RSP_1832	-	M16 family peptidase
414	 71.28	0	425150..425734	+	194	77462379	-	RSP_1833	-	putative ribosomal-protein-alanine acetyltransferase
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.