IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2906	 71.21	0	3061216..3062250	-	344	77464871	-	RSP_1293	-	putative acyl-carrier protein
2907	 70.38	0	3062247..3064430	-	727	77464872	-	RSP_1294	-	branched-chain alpha-keto acid dehydrogenase E1 component
2908	 68.48	0	3064506..3065717	-	403	77464873	-	RSP_1295	-	putative acyl-CoA dehydrogenase
2909	 73.77	+1	3065797..3066711	+	304	77464874	-	RSP_1297	-	LysR family transcriptional regulator
2910	 73.72	+1	3066683..3067816	-	377	77464875	nagA	RSP_1296	-	N-acetylglucosamine 6-phosphate deacetylase
2911	 70.54	0	3067938..3069872	+	644	77464876	-	RSP_1299	-	hypothetical protein
2912	 67.41	0	3069900..3070838	+	312	77464877	-	RSP_1300	-	hypothetical protein
2913	 70.14	0	3070840..3072510	+	556	77464878	-	RSP_1301	-	putative peptidase
2914	 72.82	0	3072641..3073534	+	297	77464879	-	RSP_6154	-	hypothetical protein
2915	 65.83	0	3073609..3074445	+	278	77464880	motB	RSP_1302	-	putative chemotaxis MotB protein
2916	 65.02	0	3074540..3075937	+	465	77464881	flgE	RSP_1303	-	putative flagellar hook protein
2917	 69.16	0	3075950..3077395	+	481	77464882	flgK	RSP_1304	-	flagellar hook-associated protein FlgK
2918	 65.87	0	3077396..3078397	+	333	77464883	-	RSP_1305	-	putative flagellar hook-associated protein
2919	 64.84	0	3078397..3079488	+	363	77464884	flgI	RSP_1307	-	flagellar basal body P-ring protein
2920	 66.28	0	3079464..3082313	-	949	77464885	-	RSP_1306	-	PAS sensor Signal tranduction histidine kinase
2921	 73.41	+1	3082377..3083459	+	360	77464886	-	RSP_1308	-	hypothetical protein
2922	 67.36	0	3083450..3084169	-	239	77464887	fliP	RSP_1309	-	flagellar biosynthesis protein FliP
2923	 68.16	0	3084166..3084432	-	88	77464888	-	RSP_1310	-	hypothetical protein
2924	 69.37	0	3084425..3085015	-	196	77464889	fliH	RSP_1311	-	putative flagellar biosynthesis/type III secretory pathway protein
2925	 70.57	0	3085015..3086601	-	528	161723324	fliF	RSP_1312	-	flagellar MS-ring protein
2926	 67.89	0	3086713..3087201	+	162	77464891	-	RSP_1313	-	flagellar synthesis protein
2927	 71.35	0	3087235..3087597	+	120	77464892	-	RSP_1314	-	hypothetical protein
2928	 69.71	0	3087594..3088151	+	185	77464893	-	RSP_1315	-	hypothetical protein
2929	 62.30	-1	3088208..3089077	+	289	77464894	motA	RSP_1316	-	flagellar motor protein MotA
2930	 69.83	0	3089074..3091032	+	652	77464895	-	RSP_1318	-	hypothetical protein
2931	 68.14	0	3091328..3092008	+	226	77464896	-	RSP_1319	-	invasion protein
2932	 64.83	0	3092012..3094078	+	688	77464897	flhA	RSP_1320	-	flagellar biosynthesis protein FlhA
2933	 64.75	0	3094075..3094857	+	260	77464898	fliR	RSP_1321	-	flagellar biosynthesis pathway, component FliR
2934	 67.04	0	3094854..3095933	+	359	77464899	flhB	RSP_1322	-	flagellar biosynthesis protein FlhB
2935	 69.09	0	3095930..3096259	+	109	77464900	-	RSP_6155	-	hypothetical protein
2936	 66.32	0	3096291..3096578	-	95	77464901	-	RSP_1323	-	hypothetical protein
2937	 67.78	0	3096809..3097528	-	239	77464902	flgH	RSP_1324	-	flagellar basal body L-ring protein
2938	 73.57	+1	3097539..3097958	-	139	77464903	flgA	RSP_1325	-	flagellar basal body P-ring biosynthesis protein FlgA
2939	 67.68	0	3097958..3098743	-	261	77464904	flgG	RSP_1326	-	flagellar basal body rod protein FlgG
2940	 69.31	0	3098740..3099459	-	239	77464905	flgF	RSP_1327	-	flagellar basal body rod protein FlgF
2941	 65.54	0	3099461..3099727	-	88	77464906	-	RSP_1328	-	flagellar biosynthetic protein FliQ
2942	 66.67	0	3099727..3100017	-	96	77464907	fliE	RSP_1329	-	flagellar hook-basal body protein FliE
2943	 66.15	0	3100031..3100417	-	128	77464908	flgC	RSP_1330	-	flagellar basal body rod protein FlgC
2944	 67.45	0	3100414..3100797	-	127	77464909	flgB	RSP_1331	-	flagellar basal body rod protein FlgB
2945	 70.86	0	3100881..3102191	+	436	77464910	-	RSP_1332	-	H+-transporting two-sector ATPase, alpha/beta subunit
2946	 75.00	+1	3102195..3102518	-	107	77464911	-	RSP_1333	-	hypothetical protein
2947	 67.03	0	3102508..3102786	-	92	77464912	-	RSP_1334	-	chemotactic signal-response protein CheL
2948	 69.37	0	3102890..3105109	+	739	77464913	-	RSP_1335	-	hypothetical protein
2949	 67.41	0	3105119..3105787	+	222	77464914	flgD	RSP_1336	-	flagellar basal body rod modification protein
2950	 67.68	0	3105782..3107263	-	493	77464915	aarF	RSP_1337	-	2-octaprenylphenol hydroxylase
2951	 63.75	-1	3107313..3108065	-	250	77464916	ubiE	RSP_1338	-	2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase
2952	 70.89	0	3108159..3109010	+	283	77464917	-	RSP_1339	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
2953	 65.12	0	3109071..3109847	+	258	77464918	-	RSP_1340	-	short chain enoyl-CoA hydratase
2954	 70.61	0	3109958..3110236	+	92	77464919	rpsT	RSP_1341	-	30S ribosomal protein S20
2955	 66.15	0	3110775..3112142	+	455	77464920	dnaA	RSP_1342	-	chromosomal replication initiation protein
2956	 66.40	0	3112260..3113378	+	372	77464921	-	RSP_1343	-	DNA polymerase III subunit beta
2957	 71.18	0	3113431..3114537	+	368	77464922	recF	RSP_1344	-	recombination protein F
2958	 71.39	0	3114534..3114956	+	140	77464923	-	RSP_1345	-	hypothetical protein
2959	 67.32	0	3115048..3117483	+	811	77464924	gyrB	RSP_1346	-	DNA gyrase subunit B
2960	 69.07	0	3117440..3118729	-	429	77464925	-	RSP_1348	-	hypothetical protein
2961	 67.32	0	3118819..3119895	+	358	77464926	-	RSP_1349	-	hypothetical protein
2962	 69.52	0	3120103..3120978	-	291	77464927	serB	RSP_1350	-	phosphoserine phosphatase
2963	 68.22	0	3121118..3122275	+	385	77464928	serC	RSP_1351	-	phosphoserine aminotransferase
2964	 65.23	0	3122347..3123951	+	534	77464929	-	RSP_1352	-	D-3-phosphoglycerate dehydrogenase
2965	 70.08	0	3124050..3124781	+	243	77464930	-	RSP_1353	-	hypothetical protein
2966	 72.74	0	3124864..3126033	+	389	77464931	-	RSP_1354	-	beta-ketothiolase
2967	 75.01	+1	3126043..3128067	-	674	77464932	-	RSP_1355	-	glycosyl transferase family protein
2968	 72.12	0	3128064..3133490	-	1808	77464933	-	RSP_1356	-	hypothetical protein
2969	 69.92	0	3133645..3136194	+	849	77464934	-	RSP_1357	-	cytoplasmic sensor hybrid histidine kinase
2970	 71.83	0	3136348..3137121	-	257	77464935	-	RSP_1358	-	hypothetical protein
2971	 71.80	0	3137121..3139166	-	681	77464936	recQ	RSP_1359	-	DEAD/DEAH box helicase
2972	 58.50	-2	3139224..3139529	-	101	77464937	-	RSP_1360	-	hypothetical protein
2973	 71.56	0	3139640..3140170	+	176	77464938	-	RSP_1361	-	hypothetical protein
2974	 70.75	0	3140265..3141635	+	456	77464939	-	RSP_1362	-	major facilitator transporter
2975	 71.07	0	3141632..3142516	+	294	77464940	mepA	RSP_1363	-	penicillin-insensitive murein endopeptidase
2976	 70.89	0	3142528..3143379	+	283	77464941	-	RSP_1364	-	hypothetical protein
2977	 67.15	0	3143461..3144087	+	208	77464942	-	RSP_1365	-	hypothetical protein
2978	 72.07	0	3144367..3144792	+	141	77464943	-	RSP_1366	-	hypothetical protein
2979	 65.89	0	3144801..3146093	-	430	77464944	-	RSP_1367	-	nicotinate phosphoribosyltransferase
2980	 69.97	0	3146095..3146700	-	201	77464945	pncA	RSP_1368	-	pyrazinamidase/nicotinamidase
2981	 69.35	0	3146893..3147675	+	260	77464946	-	RSP_1369	-	Short-chain dehydrogenase/reductase SDR
2982	 73.48	+1	3147672..3148595	+	307	77464947	-	RSP_1371	-	2-keto-3-deoxygalactonate kinase
2983	 67.72	0	3148553..3150163	-	536	77464948	-	RSP_1370	-	alpha amylase domain-containing protein
2984	 67.55	0	3150624..3151862	+	412	77464949	-	RSP_1372	-	major facilitator transporter
2985	 72.29	0	3151955..3153127	+	390	77464950	-	RSP_1373	-	major facilitator transporter
2986	 73.04	+1	3153176..3154210	+	344	77464951	lpsB	RSP_1374	-	putative lipopolysaccharide core biosynthesis mannosyltransferase protein
2987	 72.09	0	3154207..3154833	+	208	77464952	-	RSP_1375	-	hypothetical protein
2988	 63.83	-1	3154962..3155984	+	340	77464953	asd	RSP_1376	-	aspartate-semialdehyde dehydrogenase
2989	 66.07	0	3156070..3156738	-	222	77464954	-	RSP_1377	-	carbonic anhydrase
2990	 66.41	0	3156854..3157237	+	127	77464955	-	RSP_1378	-	hypothetical protein
2991	 71.74	0	3157254..3158693	+	479	77464956	-	RSP_1379	-	cytosol aminopeptidase
2992	 69.85	0	3158690..3159505	+	271	77464957	-	RSP_1380	-	hypothetical protein
2993	 72.97	+1	3159612..3160832	-	406	77464958	-	RSP_1381	-	hypothetical protein
2994	 67.35	0	3160847..3162025	-	392	77464959	-	RSP_1382	-	radical SAM superfamily protein
2995	 67.61	0	3162164..3162694	-	176	77464960	-	RSP_1383	-	hypothetical protein
2996	 72.02	0	3162861..3163850	+	329	77464961	-	RSP_1384	-	hypothetical protein
2997	 72.14	0	3163866..3164705	-	279	77464962	-	RSP_1385	-	hypothetical protein
2998	 67.07	0	3164840..3166318	+	492	77464963	-	RSP_1387	-	AMP nucleosidase
2999	 67.01	0	3166447..3166734	+	95	77464964	-	RSP_1388	-	DNA-binding protein HU, form N
3000	 71.32	0	3166804..3167685	+	293	77464965	-	RSP_1390	-	DMT family permease
3001	 70.94	0	3167682..3168782	-	366	77464966	aroC	RSP_1389	-	chorismate synthase
3002	 69.19	0	3168984..3170012	+	342	77464967	tbpA	RSP_1391	-	thiamine transporter substrate binding subunit
3003	 74.06	+1	3169988..3171502	+	504	77464968	thiP	RSP_1392	-	thiamine transporter membrane protein
3004	 73.99	+1	3171489..3172184	+	231	77464969	thiQ	RSP_1393	-	ABC thiamine transporter, ATPase subunit
3005	 66.90	0	3172234..3173091	-	285	77464970	fbcC	RSP_1394	-	cytochrome c1 precursor
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.