IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2866	 69.41	0	3023043..3024464	-	473	77464831	-	RSP_1255	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
2867	 68.64	0	3024451..3025209	-	252	77464832	-	RSP_1256	-	enoyl-(acyl carrier protein) reductase
2868	 67.65	0	3025222..3026943	-	573	77464833	phbC	RSP_1257	-	putative polyhydroxyalkanoic synthase, PHA synthase
2869	 69.65	0	3027250..3028188	+	312	77464834	-	RSP_1258	-	putative hydrolase
2870	 62.25	-1	3028270..3028473	+	67	77464835	-	RSP_1259	-	hypothetical protein
2871	 67.75	0	3028529..3028990	+	153	77464836	-	RSP_1260	-	hypothetical protein
2872	 67.38	0	3029037..3029459	-	140	77464837	blrB	RSP_1261	-	BLUF blue-light receptor
2873	 70.07	0	3029531..3030118	-	195	77464838	-	RSP_1262	-	response regulator receiver protein
2874	 72.91	0	3030317..3030877	-	186	77464839	-	RSP_1263	-	hypothetical protein
2875	 65.52	0	3031106..3031192	+	28	77464840	-	RSP_1264	-	hypothetical protein
2876	 70.29	0	3031200..3032855	+	551	77464841	kdpA	RSP_1265	-	potassium-transporting ATPase subunit A
2877	 70.76	0	3032864..3034891	+	675	77464842	kdpB	RSP_1266	-	potassium-transporting P-type ATPase, B chain, KdpB
2878	 74.91	+1	3034904..3035461	+	185	77464843	kdpC	RSP_1267	-	potassium-transporting P-type ATPase C chain, kdpC
2879	 73.72	+1	3035465..3038128	+	887	77464844	kdpD	RSP_1268	-	osmosensitive K+ channel signal transduction histidine kinase
2880	 71.62	0	3038125..3038811	+	228	77464845	kdpE	RSP_1269	-	two component transcriptional regulator
2881	 63.11	-1	3038888..3039112	-	74	77464846	-	RSP_1270	-	hypothetical protein
2882	 69.58	0	3039191..3040972	-	593	77464847	-	RSP_1271	-	periplasmic sensor signal transduction histidine kinase
2883	 67.01	0	3040969..3041553	-	194	77464848	-	RSP_1272	-	RNA polymerase sigma factor
2884	 60.39	-2	3041550..3041756	-	68	77464849	-	RSP_1273	-	hypothetical protein
2885	 66.79	0	3041859..3042668	+	269	77464850	-	RSP_1274	-	two-component response regulator
2886	 66.67	0	3042682..3043041	-	119	77464851	-	RSP_6152	-	hypothetical protein
2887	 67.33	0	3043116..3043865	+	249	77464852	-	RSP_1275	-	Crp/Fnr family transcriptional regulator
2888	 64.24	-1	3044005..3044457	+	150	77464853	-	RSP_1276	-	hypothetical protein
2889	 70.72	0	3044759..3046066	-	435	77464854	-	RSP_1277	-	hypothetical protein
2890	 69.71	0	3046063..3046719	-	218	77464855	cbbZ	RSP_1278	-	phosphoglycolate phosphatase
2891	 70.85	0	3046719..3047411	-	230	77464856	cbbY	RSP_1279	-	CbbY family protein
2892	 65.69	0	3047408..3048433	-	341	77464857	cbbX	RSP_1280	-	CbbX protein
2893	 65.64	0	3048508..3048897	-	129	77464858	cbbS	RSP_1281	-	ribulose 1,5-bisphosphate carboxylase small subunit
2894	 65.43	0	3048909..3050369	-	486	77464859	rbcL	RSP_1282	-	ribulose bisophosphate carboxylase
2895	 66.85	0	3050384..3051463	-	359	77464860	cfxA	RSP_1283	-	fructose-1,6-bisphosphate aldolase
2896	 65.29	0	3051587..3052459	-	290	77464861	prkA	RSP_1284	-	phosphoribulokinase
2897	 67.76	0	3052466..3053467	-	333	77464862	cbbF1	RSP_1285	-	D-fructose 1,6-bisphosphatase
2898	 69.56	0	3053558..3054490	+	310	77464863	cbbR	RSP_1286	-	RuBisCO operon transcriptional regulator, CbbR
2899	 72.13	0	3054495..3055190	-	231	77464864	-	RSP_1287	-	branched chain amino acid ABC transporter ATPase
2900	 70.94	0	3055192..3055893	-	233	77464865	-	RSP_1288	-	branched chain amino acid ABC transporter ATPase
2901	 69.88	0	3055890..3056822	-	310	77464866	-	RSP_1289	-	branched chain amino acid ABC transporter inner membrane protein
2902	 70.76	0	3056819..3057697	-	292	77464867	-	RSP_1290	-	branched chain amino acid ABC transporter inner membrane protein
2903	 67.60	0	3057700..3058980	-	426	77464868	-	RSP_1291	-	branched chain amino acid ABC transporter periplasmic substrate-binding protein
2904	 73.90	+1	3059227..3059751	+	174	77464869	-	RSP_6153	-	hypothetical protein
2905	 71.65	0	3059735..3061219	-	494	77464870	-	RSP_1292	-	putative aldehyde dehydrogenase
2906	 71.21	0	3061216..3062250	-	344	77464871	-	RSP_1293	-	putative acyl-carrier protein
2907	 70.38	0	3062247..3064430	-	727	77464872	-	RSP_1294	-	branched-chain alpha-keto acid dehydrogenase E1 component
2908	 68.48	0	3064506..3065717	-	403	77464873	-	RSP_1295	-	putative acyl-CoA dehydrogenase
2909	 73.77	+1	3065797..3066711	+	304	77464874	-	RSP_1297	-	LysR family transcriptional regulator
2910	 73.72	+1	3066683..3067816	-	377	77464875	nagA	RSP_1296	-	N-acetylglucosamine 6-phosphate deacetylase
2911	 70.54	0	3067938..3069872	+	644	77464876	-	RSP_1299	-	hypothetical protein
2912	 67.41	0	3069900..3070838	+	312	77464877	-	RSP_1300	-	hypothetical protein
2913	 70.14	0	3070840..3072510	+	556	77464878	-	RSP_1301	-	putative peptidase
2914	 72.82	0	3072641..3073534	+	297	77464879	-	RSP_6154	-	hypothetical protein
2915	 65.83	0	3073609..3074445	+	278	77464880	motB	RSP_1302	-	putative chemotaxis MotB protein
2916	 65.02	0	3074540..3075937	+	465	77464881	flgE	RSP_1303	-	putative flagellar hook protein
2917	 69.16	0	3075950..3077395	+	481	77464882	flgK	RSP_1304	-	flagellar hook-associated protein FlgK
2918	 65.87	0	3077396..3078397	+	333	77464883	-	RSP_1305	-	putative flagellar hook-associated protein
2919	 64.84	0	3078397..3079488	+	363	77464884	flgI	RSP_1307	-	flagellar basal body P-ring protein
2920	 66.28	0	3079464..3082313	-	949	77464885	-	RSP_1306	-	PAS sensor Signal tranduction histidine kinase
2921	 73.41	+1	3082377..3083459	+	360	77464886	-	RSP_1308	-	hypothetical protein
2922	 67.36	0	3083450..3084169	-	239	77464887	fliP	RSP_1309	-	flagellar biosynthesis protein FliP
2923	 68.16	0	3084166..3084432	-	88	77464888	-	RSP_1310	-	hypothetical protein
2924	 69.37	0	3084425..3085015	-	196	77464889	fliH	RSP_1311	-	putative flagellar biosynthesis/type III secretory pathway protein
2925	 70.57	0	3085015..3086601	-	528	161723324	fliF	RSP_1312	-	flagellar MS-ring protein
2926	 67.89	0	3086713..3087201	+	162	77464891	-	RSP_1313	-	flagellar synthesis protein
2927	 71.35	0	3087235..3087597	+	120	77464892	-	RSP_1314	-	hypothetical protein
2928	 69.71	0	3087594..3088151	+	185	77464893	-	RSP_1315	-	hypothetical protein
2929	 62.30	-1	3088208..3089077	+	289	77464894	motA	RSP_1316	-	flagellar motor protein MotA
2930	 69.83	0	3089074..3091032	+	652	77464895	-	RSP_1318	-	hypothetical protein
2931	 68.14	0	3091328..3092008	+	226	77464896	-	RSP_1319	-	invasion protein
2932	 64.83	0	3092012..3094078	+	688	77464897	flhA	RSP_1320	-	flagellar biosynthesis protein FlhA
2933	 64.75	0	3094075..3094857	+	260	77464898	fliR	RSP_1321	-	flagellar biosynthesis pathway, component FliR
2934	 67.04	0	3094854..3095933	+	359	77464899	flhB	RSP_1322	-	flagellar biosynthesis protein FlhB
2935	 69.09	0	3095930..3096259	+	109	77464900	-	RSP_6155	-	hypothetical protein
2936	 66.32	0	3096291..3096578	-	95	77464901	-	RSP_1323	-	hypothetical protein
2937	 67.78	0	3096809..3097528	-	239	77464902	flgH	RSP_1324	-	flagellar basal body L-ring protein
2938	 73.57	+1	3097539..3097958	-	139	77464903	flgA	RSP_1325	-	flagellar basal body P-ring biosynthesis protein FlgA
2939	 67.68	0	3097958..3098743	-	261	77464904	flgG	RSP_1326	-	flagellar basal body rod protein FlgG
2940	 69.31	0	3098740..3099459	-	239	77464905	flgF	RSP_1327	-	flagellar basal body rod protein FlgF
2941	 65.54	0	3099461..3099727	-	88	77464906	-	RSP_1328	-	flagellar biosynthetic protein FliQ
2942	 66.67	0	3099727..3100017	-	96	77464907	fliE	RSP_1329	-	flagellar hook-basal body protein FliE
2943	 66.15	0	3100031..3100417	-	128	77464908	flgC	RSP_1330	-	flagellar basal body rod protein FlgC
2944	 67.45	0	3100414..3100797	-	127	77464909	flgB	RSP_1331	-	flagellar basal body rod protein FlgB
2945	 70.86	0	3100881..3102191	+	436	77464910	-	RSP_1332	-	H+-transporting two-sector ATPase, alpha/beta subunit
2946	 75.00	+1	3102195..3102518	-	107	77464911	-	RSP_1333	-	hypothetical protein
2947	 67.03	0	3102508..3102786	-	92	77464912	-	RSP_1334	-	chemotactic signal-response protein CheL
2948	 69.37	0	3102890..3105109	+	739	77464913	-	RSP_1335	-	hypothetical protein
2949	 67.41	0	3105119..3105787	+	222	77464914	flgD	RSP_1336	-	flagellar basal body rod modification protein
2950	 67.68	0	3105782..3107263	-	493	77464915	aarF	RSP_1337	-	2-octaprenylphenol hydroxylase
2951	 63.75	-1	3107313..3108065	-	250	77464916	ubiE	RSP_1338	-	2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase
2952	 70.89	0	3108159..3109010	+	283	77464917	-	RSP_1339	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
2953	 65.12	0	3109071..3109847	+	258	77464918	-	RSP_1340	-	short chain enoyl-CoA hydratase
2954	 70.61	0	3109958..3110236	+	92	77464919	rpsT	RSP_1341	-	30S ribosomal protein S20
2955	 66.15	0	3110775..3112142	+	455	77464920	dnaA	RSP_1342	-	chromosomal replication initiation protein
2956	 66.40	0	3112260..3113378	+	372	77464921	-	RSP_1343	-	DNA polymerase III subunit beta
2957	 71.18	0	3113431..3114537	+	368	77464922	recF	RSP_1344	-	recombination protein F
2958	 71.39	0	3114534..3114956	+	140	77464923	-	RSP_1345	-	hypothetical protein
2959	 67.32	0	3115048..3117483	+	811	77464924	gyrB	RSP_1346	-	DNA gyrase subunit B
2960	 69.07	0	3117440..3118729	-	429	77464925	-	RSP_1348	-	hypothetical protein
2961	 67.32	0	3118819..3119895	+	358	77464926	-	RSP_1349	-	hypothetical protein
2962	 69.52	0	3120103..3120978	-	291	77464927	serB	RSP_1350	-	phosphoserine phosphatase
2963	 68.22	0	3121118..3122275	+	385	77464928	serC	RSP_1351	-	phosphoserine aminotransferase
2964	 65.23	0	3122347..3123951	+	534	77464929	-	RSP_1352	-	D-3-phosphoglycerate dehydrogenase
2965	 70.08	0	3124050..3124781	+	243	77464930	-	RSP_1353	-	hypothetical protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.