IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
232	 70.58	0	248368..249057	-	229	77462197	-	RSP_6014	-	hypothetical protein
233	 72.46	0	249064..249615	-	183	77462198	-	RSP_1655	-	hypothetical protein
234	 58.68	-2	250098..250460	+	120	77462199	-	RSP_6209	-	hypothetical protein
235	 65.05	0	250745..250930	+	61	77462200	-	RSP_1656	-	hypothetical protein
236	 76.26	+1	250927..251124	+	65	77462201	-	RSP_1657	-	hypothetical protein
237	 73.87	+1	251121..251453	+	110	77462202	-	RSP_1658	-	hypothetical protein
238	 71.72	0	251453..251848	+	131	77462203	-	RSP_1659	-	hypothetical protein
239	 72.82	0	251971..253140	+	389	77462204	-	RSP_1660	-	ParB family protein
240	 69.57	0	253514..253789	+	91	77462205	-	RSP_1661	-	hypothetical protein
241	 68.31	0	253865..254107	+	80	77462206	-	RSP_6015	-	hypothetical protein
242	 68.58	0	254119..255165	+	348	77462207	-	RSP_1662	-	integrase/recombinase
243	 69.08	0	255570..256607	+	345	77462208	-	RSP_1663	-	LacI family transcription regulator
244	 71.96	0	256614..257066	-	150	77462209	-	RSP_1664	-	hypothetical protein
245	 71.59	0	257063..257671	-	202	77462210	-	RSP_1665	-	RhtB family transporter
246	 68.44	0	257682..258641	-	319	77462211	LytB	RSP_1666	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
247	 61.26	-1	258792..259364	-	190	77462212	-	RSP_1667	-	hypothetical protein
248	 66.48	0	259554..260090	+	178	77462213	FolK	RSP_1668	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
249	 64.69	0	260175..260528	+	117	77462214	rpoZ	RSP_1669	-	DNA-directed RNA polymerase subunit omega
250	 65.68	0	260559..262676	+	705	77462215	spoT/relA	RSP_1670	-	RelA/SpoT family protein
251	 68.65	0	262693..263349	+	218	77462216	-	RSP_1671	-	hypothetical protein
252	 71.28	0	263386..264144	+	252	77462217	pdxJ	RSP_1672	-	pyridoxal phosphate biosynthetic protein PdxJ
253	 70.29	0	264176..264589	+	137	77462218	acpS	RSP_1673	-	4'-phosphopantetheinyl transferase
254	 64.52	-1	264610..265449	+	279	77462219	-	RSP_1674	-	signal peptidase I
255	 72.03	0	265446..266135	+	229	77462220	rnc	RSP_1675	-	RNAse III
256	 68.96	0	266128..267042	+	304	77462221	era	RSP_1676	-	GTP-binding protein Era
257	 72.92	0	267064..267399	+	111	77462222	-	RSP_1677	-	hypothetical protein
258	 73.33	+1	267436..268155	+	239	77462223	recO	RSP_1678	-	DNA repair protein RecO
259	 68.37	0	268195..269841	-	548	77462224	-	RSP_1679	-	acyl-CoA dehydrogenase
260	 66.10	0	270577..272175	-	532	77462225	pckA	RSP_1680	-	phosphoenolpyruvate carboxykinase
261	 64.39	-1	272514..273215	+	233	77462226	-	RSP_1681	-	two-component transcriptional regulator
262	 70.39	0	273238..274956	+	572	77462227	-	RSP_1682	-	two-component sensor histidine kinase
263	 71.10	0	274953..275381	+	142	77462228	-	RSP_1683	-	Hpr(Ser) kinase/phosphatase
264	 67.00	0	275403..276311	+	302	77462229	-	RSP_1684	-	hypothetical protein
265	 67.42	0	276308..276706	+	132	77462230	-	RSP_1685	-	PTS system, IIA component
266	 65.93	0	276703..276972	+	89	77462231	-	RSP_1686	-	putative phosphocarrier HPr protein
267	 69.58	0	277116..278213	+	365	77462232	-	RSP_1688	-	acyltransferase
268	 64.61	-1	278180..279055	-	291	77462233	hbdA	RSP_1687	-	3-hydroxybutyryl-CoA dehydrogenase
269	 68.61	0	279224..280048	+	274	77462234	-	RSP_1689	-	hypothetical protein
270	 69.69	0	280096..281022	-	308	77462235	etfA	RSP_1690	-	electron transfer flavoprotein subunit alpha
271	 65.62	0	281022..281783	-	253	77462236	etfB	RSP_1691	-	electron transfer flavoprotein subunit beta
272	 70.29	0	281914..282492	-	192	77462237	pduO	RSP_1692	-	ATP:cob(I)alamin adenosyltransferase
273	 65.71	0	282492..282701	-	69	77462238	-	RSP_6016	-	hypothetical protein
274	 70.59	0	282869..283684	-	271	77462239	-	RSP_1694	-	short-chain dehydrogenase/reductase
275	 73.37	+1	283985..284566	-	193	77462240	-	RSP_1695	-	hypothetical protein
276	 68.71	0	284679..286982	+	767	77462241	-	RSP_1696	-	DNA topoisomerase IV subunit A
277	 66.50	0	287111..287716	+	201	77462242	-	RSP_1697	-	hypothetical protein
278	 65.14	0	287817..288992	+	391	77462243	tufA	RSP_1707	-	elongation factor Tu
279	 69.61	0	289160..289804	+	214	77462244	-	RSP_1706	-	putative acetyltransferase
280	 64.62	-1	290047..290241	+	64	77462245	secE	RSP_1705	-	preprotein translocase subunit SecE
281	 63.86	-1	290404..290937	+	177	77462246	-	RSP_1704	-	transcription antitermination protein nusG
282	 63.80	-1	291030..291482	+	150	77462247	rplK	RSP_1703	-	50S ribosomal protein L11
283	 67.38	0	291486..292184	+	232	77462248	rplA	RSP_1702	-	50S ribosomal protein L1
284	 62.98	-1	292423..292938	+	171	77462249	rplJ	RSP_1701	-	50S ribosomal protein L10
285	 61.11	-1	293008..293385	+	125	77462250	rplL	RSP_1700	-	50S ribosomal protein L7/L12
286	 65.36	0	293630..297763	+	1377	77462251	rpoB	RSP_1699	-	DNA-directed RNA polymerase subunit beta
287	 64.92	0	297845..302092	+	1415	77462252	rpoC	RSP_1712	-	DNA-directed RNA polymerase subunit beta'
288	 70.23	0	302284..303210	+	308	77462253	-	RSP_1711	-	RhaT family protein
289	 61.29	-1	303423..303794	+	123	77462254	rpsL	RSP_1710	-	30S ribosomal protein S12
290	 63.69	-1	303807..304277	+	156	77462255	rpsG	RSP_1709	-	30S ribosomal protein S7
291	 64.12	-1	304302..306419	+	705	77462256	fusA1	RSP_1708	-	elongation factor G
292	 64.80	0	306494..307669	+	391	77462257	tufA	RSP_1714	-	elongation factor Tu
293	 61.81	-1	307742..308050	+	102	77462258	rpsJ	RSP_1715	-	30S ribosomal protein S10
294	 66.11	0	308064..308786	+	240	77462259	rplC	RSP_1716	-	50S ribosomal protein L3
295	 64.90	0	308776..309396	+	206	77462260	rplD	RSP_1717	-	50S ribosomal protein L4
296	 59.93	-2	309393..309689	+	98	77462261	rplW	RSP_1718	-	50S ribosomal protein L23
297	 67.86	0	309812..310651	+	279	77462262	rplB	RSP_1719	-	50S ribosomal protein L2
298	 58.06	-2	310655..310933	+	92	77462263	rpsS	RSP_1720	-	30S ribosomal protein S19
299	 61.15	-1	310937..311317	+	126	77462264	rplV	RSP_1721	-	50S ribosomal protein L22
300	 65.97	0	311317..312033	+	238	77462265	rpsC	RSP_1722	-	30S ribosomal protein S3
301	 66.91	0	312048..312461	+	137	77462266	rplP	RSP_1723	-	50S ribosomal protein L16
302	 67.63	0	312701..312907	+	68	77462267	rpmC	RSP_1724	-	50S ribosomal protein L29
303	 61.73	-1	312921..313163	+	80	77462268	rpsQ	RSP_6017	-	30S ribosomal protein S17
304	 62.60	-1	313237..313605	+	122	77462269	rplN	RSP_1725	-	50S ribosomal protein L14
305	 66.01	0	313605..313910	+	101	77462270	rplX	RSP_1726	-	50S ribosomal protein L24
306	 61.85	-1	313910..314470	+	186	77462271	rplE	RSP_1727	-	50S ribosomal protein L5
307	 61.44	-1	314490..314795	+	101	77462272	rpsN	RSP_1728	-	30S ribosomal protein S14
308	 64.91	0	314808..315206	+	132	77462273	rpsH	RSP_1729	-	30S ribosomal protein S8
309	 63.67	-1	315217..315750	+	177	77462274	rplF	RSP_1730	-	50S ribosomal protein L6
310	 65.83	0	315762..316121	+	119	77462275	rplR	RSP_1731	-	50S ribosomal protein L18
311	 67.20	0	316133..316696	+	187	77462276	rpsE	RSP_1732	-	30S ribosomal protein S5
312	 64.55	-1	316709..316897	+	62	77462277	rpmD	RSP_1733	-	50S ribosomal protein L30
313	 67.70	0	317054..317539	+	161	77462278	rplO	RSP_1734	-	50S ribosomal protein L15
314	 64.09	-1	317640..318998	+	452	77462279	secY	RSP_1735	-	preprotein translocase subunit SecY
315	 67.74	0	319009..319662	+	217	77462280	adk	RSP_1736	-	adenylate kinase
316	 64.50	-1	319837..320205	+	122	77462281	rpsM	RSP_1737	-	30S ribosomal protein S13
317	 65.90	0	320219..320608	+	129	77462282	rpsK	RSP_1738	-	30S ribosomal protein S11
318	 62.73	-1	320724..321740	+	338	77462283	rpoA	RSP_1739	-	DNA-directed RNA polymerase subunit alpha
319	 67.14	0	321841..322260	+	139	77462284	rplQ	RSP_1740	-	50S ribosomal protein L17
320	 61.27	-1	322519..323130	+	203	77462285	-	RSP_1741	-	LuxR family protein
321	 70.56	0	323186..324571	+	461	77462286	-	RSP_1742	-	serine protease
322	 69.10	0	324610..325923	+	437	77462287	-	RSP_1743	-	recombination factor protein RarA
323	 67.20	0	325955..326329	+	124	77462288	-	RSP_1744	-	camphor resistance protein CrcB
324	 67.82	0	326326..327366	+	346	77462289	-	RSP_1745	-	ribosomal large subunit pseudouridine synthase C
325	 70.48	0	327366..328073	+	235	77462290	-	RSP_1746	-	hypothetical protein
326	 67.06	0	328300..329316	+	338	77462291	bztA	RSP_1747	-	ABC glutamate/glutamine/aspartate/asparagine transporter, periplasmic substrate-binding protein
327	 65.16	0	329465..330727	+	420	77462292	bztB	RSP_1748	-	ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztB
328	 67.27	0	330729..332057	+	442	77462293	bztC	RSP_1749	-	ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztC
329	 62.48	-1	332070..332858	+	262	77462294	bztD	RSP_1750	-	ABC glutamate/glutamine/aspartate/asparagine transporter, ATPase subunit bztD
330	 65.85	0	333068..333436	+	122	77462295	-	RSP_1751	-	putative 2Fe-2S ferredoxin protein
331	 66.83	0	333745..334950	+	401	77462296	-	RSP_1752	-	putative creatinase
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.