IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2633	 70.28	0	2777825..2779126	-	433	77464598	-	RSP_1018	-	glycolate oxidase iron-sulfur subunit
2634	 75.95	+1	2779139..2780215	-	358	77464599	-	RSP_1019	-	putative glycolate oxidase subunit protein
2635	 69.46	0	2780280..2781713	-	477	77464600	glcD	RSP_1020	-	putative glycolate oxidase subunit protein
2636	 69.31	0	2781795..2782550	+	251	77464601	-	RSP_1021	-	hypothetical protein
2637	 71.86	0	2782444..2784618	-	724	77464602	-	RSP_6144	-	hypothetical protein
2638	 73.22	+1	2784615..2787392	-	925	77464603	-	RSP_1022	-	hypothetical protein
2639	 73.54	+1	2787392..2788264	-	290	77464604	-	RSP_1023	-	hypothetical protein
2640	 72.47	0	2788261..2789277	-	338	77464605	-	RSP_1024	-	putative MoxR family protein
2641	 68.43	0	2789360..2789926	+	188	77464606	-	RSP_1025	-	hypothetical protein
2642	 72.00	0	2789923..2790147	+	74	77464607	-	RSP_1026	-	hypothetical protein
2643	 67.12	0	2790207..2790425	+	72	77464608	-	RSP_1027	-	hypothetical protein
2644	 67.73	0	2790472..2793285	+	937	77464609	-	RSP_1028	-	DNA polymerase I
2645	 65.15	0	2793413..2793808	-	131	77464610	-	RSP_1029	-	histidine triad (HIT) protein
2646	 68.68	0	2794267..2795259	-	330	77464611	-	RSP_1030	-	pfkB family carbohydrate kinase
2647	 66.67	0	2795256..2795900	-	214	77464612	-	RSP_1031	-	DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
2648	 73.03	+1	2796013..2796861	+	282	77464613	-	RSP_1032	-	DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada
2649	 71.03	0	2796976..2797662	+	228	77464614	-	RSP_1033	-	OmpA family protein
2650	 67.19	0	2797903..2798670	+	255	77464615	pdhR	RSP_1034	-	GntR family transcriptional regulator
2651	 69.33	0	2798882..2799445	-	187	77464616	atpF	RSP_1035	-	F0F1 ATP synthase subunit B
2652	 67.40	0	2799442..2799984	-	180	77464617	atpX	RSP_1036	-	F0F1 ATP synthase subunit B'
2653	 65.82	0	2800054..2800290	-	78	77464618	atpE	RSP_1037	-	F0F1 ATP synthase subunit C
2654	 63.44	-1	2800343..2801086	-	247	77464619	atpB	RSP_1038	-	F0F1 ATP synthase subunit A
2655	 64.88	0	2801132..2801467	-	111	77464620	atpI	RSP_1039	-	FoF1 ATP synthase, subunit I
2656	 66.39	0	2801666..2802028	+	120	77464621	-	RSP_1040	-	ArsR family transcriptional regulator
2657	 70.25	0	2802063..2803568	-	501	77464622	-	RSP_1041	-	malonyl-CoA synthase
2658	 68.02	0	2803596..2804405	-	269	77464623	-	RSP_1042	-	hypothetical protein
2659	 63.06	-1	2804602..2804823	-	73	77464624	rpmE	RSP_1043	-	50S ribosomal protein L31
2660	 64.27	-1	2804836..2805210	-	124	77464625	rplS	RSP_1044	-	50S ribosomal protein L19
2661	 69.41	0	2805259..2806095	-	278	77464626	trmD	RSP_1045	-	tRNA (Guanine37-N(1)-) methyltransferase
2662	 75.20	+1	2806154..2807020	-	288	77464627	-	RSP_1046	-	hypothetical protein
2663	 71.96	0	2807173..2807682	-	169	77464628	rimM	RSP_1047	-	16S rRNA processing protein RimM
2664	 67.52	0	2807783..2808133	-	116	77464629	rpsP	RSP_1048	-	30S ribosomal protein S16
2665	 63.33	-1	2808173..2808472	-	99	77464630	pheAa	RSP_1049	-	chorismate mutase
2666	 74.51	+1	2808511..2809071	-	186	77464631	-	RSP_1050	-	acetyltransferase
2667	 72.69	0	2809068..2809598	-	176	77464632	-	RSP_1051	-	hypothetical protein
2668	 70.02	0	2809595..2810131	-	178	77464633	-	RSP_1052	-	acetyltransferase
2669	 67.65	0	2810208..2811725	-	505	77464634	ffh	RSP_1053	-	signal recognition particle subunit FFH/SRP54 (srp54)
2670	 69.66	0	2812006..2812506	-	166	77464635	-	RSP_6230	-	hypothetical protein
2671	 69.14	0	2812669..2813598	+	309	77464636	-	RSP_1055	-	LysR family transcriptional regulator
2672	 70.81	0	2814112..2815512	-	466	77464637	-	RSP_1056	-	periplasmic sensor signal transduction histidine kinase
2673	 71.34	0	2815570..2816982	-	470	77464638	merA1	RSP_1057	-	putative mercuric reductase protein
2674	 70.92	0	2816983..2817711	-	242	77464639	-	RSP_1058	-	hypothetical protein
2675	 70.37	0	2817892..2818026	+	44	77464640	rpmH	RSP_1059	-	50S ribosomal protein L34P
2676	 75.12	+1	2818049..2818462	+	137	77464641	rnpA	RSP_1060	-	ribonuclease P protein component
2677	 74.12	+1	2818459..2818713	+	84	77464642	-	RSP_1061	-	hypothetical protein
2678	 68.03	0	2818740..2819618	+	292	77464643	-	RSP_1062	-	PP family ATPase
2679	 71.71	0	2819692..2821218	+	508	77464644	-	RSP_1063	-	diguanylate cyclase/phosphodiesterase
2680	 65.92	0	2821328..2823199	+	623	77464645	-	RSP_1064	-	putative inner membrane protein translocase component YidC
2681	 72.72	0	2823196..2823939	+	247	77464646	-	RSP_1065	-	hypothetical protein
2682	 68.81	0	2823936..2824589	+	217	77464647	-	RSP_1066	-	GTPase EngB
2683	 67.70	0	2824593..2825369	-	258	77464648	fixR	RSP_1067	-	Short-chain alcohol dehydrogenase
2684	 68.59	0	2825457..2826338	+	293	77464649	argB	RSP_1068	-	acetylglutamate kinase
2685	 74.11	+1	2826338..2826982	+	214	77464650	-	RSP_1069	-	hypothetical protein
2686	 70.02	0	2826979..2827485	+	168	77464651	-	RSP_1070	-	hypothetical protein
2687	 70.98	0	2827569..2828009	-	146	77464652	moaE	RSP_1071	-	molybdopterin synthase subunit MoaE
2688	 69.08	0	2828011..2828259	-	82	77464653	moaD	RSP_1072	-	molybdopterin synthase subunit MoaD
2689	 62.76	-1	2828256..2828921	-	221	77464654	pgsA	RSP_1073	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2690	 67.90	0	2829001..2830872	-	623	77464655	uvrC	RSP_1074	-	excinuclease ABC subunit C
2691	 71.66	0	2831175..2831975	-	266	77464656	-	RSP_1075	-	short chain dehydrogenase
2692	 68.80	0	2832130..2832927	-	265	77464657	sohB	RSP_1076	-	S49 family peptidase
2693	 70.03	0	2833404..2834294	+	296	77464658	-	RSP_1077	-	LysR family transcriptional regulator
2694	 71.31	0	2834395..2834868	+	157	77464659	fdsG	RSP_1078	-	formate dehydrogenase subunit gamma
2695	 69.41	0	2834865..2836394	+	509	77464660	fdsB	RSP_1079	-	NAD dependent formate dehydrogenase, beta subunit (51 kDa)
2696	 67.88	0	2836391..2839273	+	960	77464661	fdsA	RSP_1080	-	NAD-dependent formate dehydrogenase, alpha subunit
2697	 71.81	0	2839270..2840085	+	271	77464662	fdsC	RSP_1081	-	formate dehydrogenase accessory protein
2698	 66.22	0	2840075..2840296	+	73	77464663	fdsD	RSP_1082	-	formate dehydrogenase delta subunit
2699	 64.29	-1	2840318..2840527	-	69	77464664	-	RSP_6146	-	hypothetical protein
2700	 71.18	0	2840745..2841962	+	405	77464665	-	RSP_1084	-	putative glycosyl transferase, group 1 family protein
2701	 70.37	0	2841944..2842645	-	233	77464666	-	RSP_1083	-	two component transcriptional regulator
2702	 59.35	-2	2842663..2843277	-	204	77464667	-	RSP_6231	-	hypothetical protein
2703	 66.67	0	2843493..2843738	+	81	77464668	-	RSP_1085	-	hypothetical protein
2704	 73.67	+1	2843735..2844790	+	351	77464669	sdh	RSP_1086	-	saccharopine dehydrogenase (NAD+, L-lysine-forming)
2705	 68.29	0	2844837..2845574	-	245	77464670	-	RSP_1087	-	short-chain dehydrogenase/reductase family protein
2706	 67.91	0	2845571..2846131	-	186	77464671	-	RSP_1088	-	hypothetical protein
2707	 72.64	0	2846135..2847340	-	401	77464672	-	RSP_1089	-	sugar/cation symporter
2708	 70.93	0	2847337..2848086	-	249	77464673	-	RSP_1090	-	putative cyclopropane/cyclopropene fatty acid synthesis protein
2709	 68.29	0	2848097..2849389	-	430	77464674	-	RSP_1091	-	putative cyclopropane/cyclopropene fatty acid synthesis protein, flavin amine oxidase
2710	 66.48	0	2849604..2850149	+	181	77464675	rpoE	RSP_1092	-	RNA polymerase sigma factor RpoE
2711	 72.43	0	2850158..2850799	+	213	77464676	chrR	RSP_1093	-	anti-sigma factor ChrR
2712	 69.22	0	2850855..2851991	-	378	77464677	-	RSP_1094	-	hypothetical protein
2713	 72.67	0	2852002..2853900	-	632	77464678	mutL	RSP_1095	-	DNA mismatch repair protein
2714	 70.11	0	2853937..2855244	-	435	77464679	-	RSP_1096	-	putative zinc protease
2715	 68.89	0	2855241..2856587	-	448	77464680	-	RSP_1097	-	putative zinc protease
2716	 73.30	+1	2856667..2857194	-	175	77464681	-	RSP_1098	-	hypothetical protein
2717	 68.46	0	2857248..2857805	-	185	77464682	LspA	RSP_1099	-	signal peptidase II
2718	 70.19	0	2857807..2859396	-	529	77464683	purH	RSP_1100	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2719	 75.12	+1	2859434..2861137	-	567	77464684	-	RSP_1101	-	hypothetical protein
2720	 75.43	+1	2861171..2862436	-	421	77464685	-	RSP_6147	-	rRNA methyltransferase RsmB-like
2721	 69.31	0	2862457..2862645	+	62	77464686	-	RSP_1104	-	hypothetical protein
2722	 72.72	0	2862858..2863667	-	269	77464687	DapB	RSP_1105	-	dihydrodipicolinate reductase
2723	 67.85	0	2863905..2864327	+	140	77464688	rbfA	RSP_1106	-	ribosome-binding factor A
2724	 69.65	0	2864317..2865054	+	245	77464689	-	RSP_1107	-	hypothetical protein
2725	 70.75	0	2865122..2866027	+	301	77464690	truB	RSP_1108	-	tRNA pseudouridine synthase B
2726	 68.52	0	2866248..2867324	+	358	77464691	cysK	RSP_1109	-	cysteine synthase
2727	 69.01	0	2867723..2868235	+	170	77464692	-	RSP_1110	-	hypothetical protein
2728	 63.33	-1	2868476..2868745	+	89	77464693	rpsO	RSP_1111	-	30S ribosomal protein S15
2729	 65.04	0	2868926..2871076	+	716	77464694	Pnp	RSP_1112	-	polynucleotide phosphorylase/polyadenylase
2730	 70.40	0	2871399..2872712	-	437	77464695	-	RSP_1113	-	hemolysin-type calcium-binding region; RTX toxin
2731	 68.92	0	2872932..2873774	+	280	77464696	-	RSP_1114	-	hemolysin-type calcium-binding toxin
2732	 75.39	+1	2874093..2875880	+	595	77464697	-	RSP_1115	-	hypothetical protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.