IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2567	 72.66	0	2704982..2705866	-	294	77464532	-	RSP_0952	-	transglutaminase-like protein
2568	 72.62	0	2705867..2708251	-	794	77464533	-	RSP_0953	-	hypothetical protein
2569	 70.67	0	2708251..2711772	-	1173	77464534	-	RSP_0954	-	transglutaminase-like domain-containing protein
2570	 66.79	0	2711808..2713379	-	523	77464535	-	RSP_0955	-	5'-nucleotidase
2571	 65.78	0	2713538..2713876	+	112	77464536	-	RSP_0956	-	hypothetical protein
2572	 73.43	+1	2713873..2714937	+	354	77464537	pyrD	RSP_0957	-	dihydroorotate dehydrogenase 2
2573	 60.34	-2	2715109..2715345	-	78	77464538	-	RSP_0958	-	AsnC family transcriptional regulator
2574	 70.72	0	2715617..2717317	-	566	77464539	-	RSP_0959	-	ATPase
2575	 65.35	0	2717534..2718826	-	430	77464540	-	RSP_0960	-	alcohol dehydrogenase
2576	 68.91	0	2719198..2721156	+	652	77464541	MeaA	RSP_0961	-	methylmalonyl-CoA mutase
2577	 67.31	0	2721358..2722746	-	462	77464542	-	RSP_0962	-	dihydrolipoamide dehydrogenase
2578	 68.18	0	2722861..2723256	-	131	77464543	-	RSP_0963	-	inner membrane protein
2579	 68.75	0	2723312..2724844	-	510	77464544	sucB	RSP_0964	-	dihydrolipoamide acetyltransferase
2580	 65.25	0	2724844..2727807	-	987	161723326	kgd	RSP_0965	-	alpha-ketoglutarate decarboxylase
2581	 66.89	0	2727862..2728746	-	294	77464546	sucD	RSP_0966	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
2582	 64.99	0	2728751..2729944	-	397	77464547	sucC	RSP_0967	-	succinyl-CoA synthetase subunit beta
2583	 66.15	0	2730174..2731136	-	320	161723325	mdh	RSP_0968	-	malate dehydrogenase
2584	 67.75	0	2731339..2732076	+	245	77464549	-	RSP_0969	-	putative integral membrane protein
2585	 68.07	0	2732163..2733020	+	285	77464550	-	RSP_0970	-	putative citrate lyase beta chain
2586	 65.59	0	2733029..2733583	+	184	77464551	-	RSP_0971	-	hypothetical protein
2587	 65.20	0	2733580..2733783	+	67	77464552	-	RSP_0972	-	hypothetical protein
2588	 68.60	0	2733784..2734815	+	343	77464553	-	RSP_0973	-	MaoC family protein
2589	 65.10	0	2735026..2735409	+	127	77464554	-	RSP_0974	-	succinate dehydrogenase subunit C
2590	 64.52	-1	2735421..2735792	+	123	77464555	-	RSP_0975	-	succinate dehydrogenase subunit D
2591	 68.55	0	2735804..2737606	+	600	77464556	sdhA	RSP_0976	-	succinate dehydrogenase flavoprotein subunit
2592	 73.52	+1	2737606..2737926	+	106	77464557	-	RSP_0977	-	hypothetical protein
2593	 73.12	+1	2737930..2738208	+	92	77464558	-	RSP_0978	-	hypothetical protein
2594	 63.33	-1	2738227..2739006	+	259	77464559	sdhB	RSP_0979	-	succinate dehydrogenase iron-sulfur subunit
2595	 65.29	0	2739292..2739654	-	120	77464560	-	RSP_6142	-	hypothetical protein
2596	 72.78	0	2739750..2740436	-	228	77464561	-	RSP_0981	-	GntR family transcriptional regulator
2597	 72.63	0	2740433..2741119	-	228	77464562	-	RSP_0982	-	zinc metallopeptidase-like protein
2598	 62.99	-1	2741231..2741611	+	126	77464563	-	RSP_0983	-	hypothetical protein
2599	 73.33	+1	2742068..2742322	+	84	77464564	-	RSP_6143	-	hypothetical protein
2600	 68.90	0	2742390..2744087	-	565	77464565	-	RSP_0985	-	adenine deaminase
2601	 68.13	0	2744222..2745178	+	318	77464566	-	RSP_0987	-	RarD family transporter
2602	 73.20	+1	2745175..2745771	-	198	77464567	frcK	RSP_0986	-	putative fructose transport system kinase
2603	 67.18	0	2745768..2746544	-	258	77464568	-	RSP_0988	-	ABC sugar transporter, ATPase subunit
2604	 66.85	0	2746544..2747635	-	363	77464569	-	RSP_0989	-	ABC sugar transporter, inner membrane subunit
2605	 68.04	0	2747810..2748832	-	340	77464570	-	RSP_0990	-	ABC sugar transporter, periplasmic sugar binding subunit
2606	 72.39	0	2749030..2750253	+	407	77464571	-	RSP_0991	-	ROK family transcriptional regulator
2607	 68.14	0	2750378..2753227	+	949	77464572	phaA/B	RSP_0992	-	putative monovalent cation/H+ antiporter subunit A
2608	 66.96	0	2753227..2753562	+	111	77464573	phaC	RSP_0993	-	putative monovalent cation/H+ antiporter subunit C
2609	 69.91	0	2753559..2755070	+	503	77464574	phaD	RSP_0994	-	putative monovalent cation/H+ antiporter subunit D
2610	 65.24	0	2755067..2755558	+	163	77464575	phaE	RSP_0995	-	putative monovalent cation/H+ antiporter subunit E
2611	 64.81	0	2755555..2755824	+	89	77464576	phaF	RSP_0996	-	pH adaption potassium efflux system, PhaF subunit
2612	 66.15	0	2755830..2756216	+	128	77464577	phaG	RSP_0997	-	pH adaption potassium efflux system, PhaG subunit
2613	 64.74	0	2756350..2757648	+	432	77464578	nhaD	RSP_0998	-	Na+/H+ antiporter, NhaD
2614	 66.85	0	2757701..2758255	-	184	77464579	-	RSP_0999	-	hypothetical protein
2615	 73.18	+1	2758394..2759191	+	265	77464580	-	RSP_1000	-	hypothetical protein
2616	 73.82	+1	2759368..2760150	-	260	77464581	-	RSP_1001	-	hypothetical protein
2617	 66.77	0	2760267..2761229	+	320	77464582	pyrB	RSP_1002	-	aspartate carbamoyltransferase catalytic subunit
2618	 71.60	0	2761226..2762503	+	425	77464583	pyrC	RSP_1003	-	dihydroorotase
2619	 70.13	0	2762724..2763329	+	201	77464584	-	RSP_1004	-	acyl-phosphate glycerol-3-phosphate acyltransferase
2620	 69.67	0	2763433..2764797	-	454	77464585	gshA	RSP_1005	-	putative glutathione synthetase
2621	 74.07	+1	2764850..2765416	-	188	77464586	-	RSP_1006	-	hypothetical protein
2622	 71.96	0	2765413..2766186	-	257	77464587	-	RSP_1007	-	hypothetical protein
2623	 71.26	0	2766198..2767199	+	333	77464588	ubiA	RSP_1008	-	prenyltransferase
2624	 73.00	+1	2767269..2769227	+	652	77464589	-	RSP_1009	-	OmpA family outer membrane protein
2625	 67.59	0	2769347..2769670	+	107	77464590	-	RSP_1011	-	hypothetical protein
2626	 73.45	+1	2769657..2770511	-	284	77464591	-	RSP_1010	-	esterase/lipase/thioesterase
2627	 67.84	0	2770541..2772076	+	511	77464592	gabD4	RSP_1012	-	succinate semialdehyde dehydrogenase
2628	 70.82	0	2772141..2773415	+	424	77464593	-	RSP_1013	-	hemolysin
2629	 73.33	+1	2773458..2773997	+	179	77464594	-	RSP_1014	-	sigma24
2630	 72.14	0	2773994..2775949	+	651	77464595	-	RSP_1015	-	von Willebrand (VWA) domain-containing protein
2631	 67.51	0	2776202..2776678	-	158	77464596	-	RSP_1016	-	small heat shock protein
2632	 72.28	0	2776973..2777791	-	272	77464597	-	RSP_1017	-	hypothetical protein
2633	 70.28	0	2777825..2779126	-	433	77464598	-	RSP_1018	-	glycolate oxidase iron-sulfur subunit
2634	 75.95	+1	2779139..2780215	-	358	77464599	-	RSP_1019	-	putative glycolate oxidase subunit protein
2635	 69.46	0	2780280..2781713	-	477	77464600	glcD	RSP_1020	-	putative glycolate oxidase subunit protein
2636	 69.31	0	2781795..2782550	+	251	77464601	-	RSP_1021	-	hypothetical protein
2637	 71.86	0	2782444..2784618	-	724	77464602	-	RSP_6144	-	hypothetical protein
2638	 73.22	+1	2784615..2787392	-	925	77464603	-	RSP_1022	-	hypothetical protein
2639	 73.54	+1	2787392..2788264	-	290	77464604	-	RSP_1023	-	hypothetical protein
2640	 72.47	0	2788261..2789277	-	338	77464605	-	RSP_1024	-	putative MoxR family protein
2641	 68.43	0	2789360..2789926	+	188	77464606	-	RSP_1025	-	hypothetical protein
2642	 72.00	0	2789923..2790147	+	74	77464607	-	RSP_1026	-	hypothetical protein
2643	 67.12	0	2790207..2790425	+	72	77464608	-	RSP_1027	-	hypothetical protein
2644	 67.73	0	2790472..2793285	+	937	77464609	-	RSP_1028	-	DNA polymerase I
2645	 65.15	0	2793413..2793808	-	131	77464610	-	RSP_1029	-	histidine triad (HIT) protein
2646	 68.68	0	2794267..2795259	-	330	77464611	-	RSP_1030	-	pfkB family carbohydrate kinase
2647	 66.67	0	2795256..2795900	-	214	77464612	-	RSP_1031	-	DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
2648	 73.03	+1	2796013..2796861	+	282	77464613	-	RSP_1032	-	DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada
2649	 71.03	0	2796976..2797662	+	228	77464614	-	RSP_1033	-	OmpA family protein
2650	 67.19	0	2797903..2798670	+	255	77464615	pdhR	RSP_1034	-	GntR family transcriptional regulator
2651	 69.33	0	2798882..2799445	-	187	77464616	atpF	RSP_1035	-	F0F1 ATP synthase subunit B
2652	 67.40	0	2799442..2799984	-	180	77464617	atpX	RSP_1036	-	F0F1 ATP synthase subunit B'
2653	 65.82	0	2800054..2800290	-	78	77464618	atpE	RSP_1037	-	F0F1 ATP synthase subunit C
2654	 63.44	-1	2800343..2801086	-	247	77464619	atpB	RSP_1038	-	F0F1 ATP synthase subunit A
2655	 64.88	0	2801132..2801467	-	111	77464620	atpI	RSP_1039	-	FoF1 ATP synthase, subunit I
2656	 66.39	0	2801666..2802028	+	120	77464621	-	RSP_1040	-	ArsR family transcriptional regulator
2657	 70.25	0	2802063..2803568	-	501	77464622	-	RSP_1041	-	malonyl-CoA synthase
2658	 68.02	0	2803596..2804405	-	269	77464623	-	RSP_1042	-	hypothetical protein
2659	 63.06	-1	2804602..2804823	-	73	77464624	rpmE	RSP_1043	-	50S ribosomal protein L31
2660	 64.27	-1	2804836..2805210	-	124	77464625	rplS	RSP_1044	-	50S ribosomal protein L19
2661	 69.41	0	2805259..2806095	-	278	77464626	trmD	RSP_1045	-	tRNA (Guanine37-N(1)-) methyltransferase
2662	 75.20	+1	2806154..2807020	-	288	77464627	-	RSP_1046	-	hypothetical protein
2663	 71.96	0	2807173..2807682	-	169	77464628	rimM	RSP_1047	-	16S rRNA processing protein RimM
2664	 67.52	0	2807783..2808133	-	116	77464629	rpsP	RSP_1048	-	30S ribosomal protein S16
2665	 63.33	-1	2808173..2808472	-	99	77464630	pheAa	RSP_1049	-	chorismate mutase
2666	 74.51	+1	2808511..2809071	-	186	77464631	-	RSP_1050	-	acetyltransferase
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.