version 1.0
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609 3022 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2522 71.26 0 2656960..2657568 - 202 77464487 dctR RSP_0907 - two component LuxR family transcriptional regulator 2523 73.16 +1 2657565..2659550 - 661 77464488 dctS RSP_0909 - PAS/PAC sensor signal transduction histidine kinase 2524 65.47 0 2659690..2660694 + 334 77464489 dctP RSP_0910 - TRAP dicarboxylate family transporter DctP subunit 2525 65.50 0 2660780..2661463 + 227 77464490 dctQ RSP_0911 - TRAP dicarboxylate family transporter DctQ subunit 2526 65.91 0 2661465..2662790 + 441 77464491 dctM RSP_0912 - TRAP dicarboxylate family transporter DctM subunit 2527 74.07 +1 2662916..2663536 - 206 77464492 crt RSP_0913 - enoyl-CoA hydratase 2528 72.38 0 2663533..2664285 - 250 77464493 - RSP_0914 - Short-chain dehydrogenase/reductase SDR 2529 67.91 0 2664409..2665938 + 509 77464494 - RSP_0915 - hypothetical protein 2530 73.21 +1 2666209..2667552 + 447 77464495 pmbA RSP_0916 - microcin-processing peptidase 1 2531 72.59 0 2667539..2668315 + 258 77464496 - RSP_0917 - inositol monophosphatase 2532 65.66 0 2668563..2668760 - 65 77464497 - RSP_0918 - hypothetical protein 2533 66.90 0 2668910..2669767 + 285 77464498 - RSP_0919 - Short-chain dehydrogenase/reductase SDR 2534 74.29 +1 2670024..2671073 + 349 77464499 exbB RSP_0920 - biopolymer transport protein, ExbB 2535 67.37 0 2671077..2671502 + 141 77464500 exbD RSP_0921 - biopolymer transport protein, ExbD 2536 76.16 +1 2671499..2672383 + 294 77464501 - RSP_0922 - putative TonB protein 2537 66.33 0 2672577..2673458 - 293 77464502 map1 RSP_0923 - methionine aminopeptidase, type I 2538 70.63 0 2673533..2674264 + 243 77464503 cinA RSP_0924 - nucleotide-utilizing enzyme/competence-damage associated protein 2539 74.26 +1 2674268..2674978 + 236 77464504 yobR RSP_0925 - putative acetyl transferase 2540 73.31 +1 2674975..2675907 + 310 77464505 - RSP_0926 - OmpA/MotB family protein 2541 67.62 0 2675930..2676871 - 313 77464506 lyrS RSP_0927 - LysR family transcriptional regulator 2542 72.76 0 2677461..2677985 - 174 77464507 - RSP_0928 - hypothetical protein 2543 67.82 0 2678351..2679304 + 317 77464508 accD RSP_0929 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2544 72.39 0 2679301..2680575 + 424 77464509 folC RSP_0930 - folylpolyglutamate synthetase 2545 67.48 0 2680710..2681198 - 162 77464510 ialA RSP_0931 - NUDIX hydrolase 2546 68.30 0 2681206..2682552 - 448 77464511 ctpA RSP_0932 - S41 family peptidase 2547 73.41 +1 2682560..2683672 - 370 77464512 - RSP_0933 - hypothetical protein 2548 69.36 0 2683669..2685189 - 506 77464513 gpmI RSP_0934 - phosphoglyceromutase 2549 69.87 0 2685220..2686497 - 425 77464514 - RSP_0935 - MiaB-like radical SAM protein 2550 72.92 0 2686494..2687324 - 276 77464515 dapF RSP_0936 - diaminopimelate epimerase 2551 66.61 0 2687731..2689377 + 548 77464516 - RSP_0937 - alpha amylase domain-containing protein 2552 65.79 0 2689471..2689698 + 75 77464517 - RSP_0938 - hypothetical protein 2553 70.64 0 2689898..2690677 + 259 77464518 - RSP_0939 - hypothetical protein 2554 68.85 0 2690826..2691833 + 335 77464519 - RSP_0940 - ABC transporter, periplasmic substrate binding protein 2555 70.69 0 2691891..2692784 + 297 77464520 - RSP_0941 - ABC transporter, ATPase subunit 2556 65.75 0 2692784..2693548 + 254 77464521 - RSP_0942 - ABC transporter, inner membrane subunit 2557 66.02 0 2693657..2695039 + 460 77464522 yhxA RSP_0943 - aminotransferase 2558 65.99 0 2695350..2696234 + 294 77464523 purU RSP_0944 - formyltetrahydrofolate deformylase 2559 71.34 0 2696305..2697930 - 541 77464524 - RSP_0945 - major facilitator transporter 2560 71.30 0 2698229..2699263 + 344 77464525 - RSP_0946 - putative DNA topoisomerase I protein 2561 63.44 -1 2699398..2699583 - 61 77464526 - RSP_0947 - hypothetical protein 2562 71.43 0 2699839..2700363 + 174 77464527 - RSP_6141 - hypothetical protein 2563 67.23 0 2700416..2701828 - 470 77464528 otsA RSP_0948 - OtsA trehalose-6-phosphate synthase 2564 71.52 0 2701825..2702607 - 260 77464529 ostB RSP_0949 - putative trehalose-6-phosphate phosphatase 2565 74.92 +1 2702774..2704384 - 536 77464530 - RSP_0950 - arginine utilization protein RocB 2566 68.47 0 2704729..2704950 - 73 77464531 - RSP_0951 - hypothetical protein 2567 72.66 0 2704982..2705866 - 294 77464532 - RSP_0952 - transglutaminase-like protein 2568 72.62 0 2705867..2708251 - 794 77464533 - RSP_0953 - hypothetical protein 2569 70.67 0 2708251..2711772 - 1173 77464534 - RSP_0954 - transglutaminase-like domain-containing protein 2570 66.79 0 2711808..2713379 - 523 77464535 - RSP_0955 - 5'-nucleotidase 2571 65.78 0 2713538..2713876 + 112 77464536 - RSP_0956 - hypothetical protein 2572 73.43 +1 2713873..2714937 + 354 77464537 pyrD RSP_0957 - dihydroorotate dehydrogenase 2 2573 60.34 -2 2715109..2715345 - 78 77464538 - RSP_0958 - AsnC family transcriptional regulator 2574 70.72 0 2715617..2717317 - 566 77464539 - RSP_0959 - ATPase 2575 65.35 0 2717534..2718826 - 430 77464540 - RSP_0960 - alcohol dehydrogenase 2576 68.91 0 2719198..2721156 + 652 77464541 MeaA RSP_0961 - methylmalonyl-CoA mutase 2577 67.31 0 2721358..2722746 - 462 77464542 - RSP_0962 - dihydrolipoamide dehydrogenase 2578 68.18 0 2722861..2723256 - 131 77464543 - RSP_0963 - inner membrane protein 2579 68.75 0 2723312..2724844 - 510 77464544 sucB RSP_0964 - dihydrolipoamide acetyltransferase 2580 65.25 0 2724844..2727807 - 987 161723326 kgd RSP_0965 - alpha-ketoglutarate decarboxylase 2581 66.89 0 2727862..2728746 - 294 77464546 sucD RSP_0966 - succinyl-CoA synthetase (ADP-forming) alpha subunit 2582 64.99 0 2728751..2729944 - 397 77464547 sucC RSP_0967 - succinyl-CoA synthetase subunit beta 2583 66.15 0 2730174..2731136 - 320 161723325 mdh RSP_0968 - malate dehydrogenase 2584 67.75 0 2731339..2732076 + 245 77464549 - RSP_0969 - putative integral membrane protein 2585 68.07 0 2732163..2733020 + 285 77464550 - RSP_0970 - putative citrate lyase beta chain 2586 65.59 0 2733029..2733583 + 184 77464551 - RSP_0971 - hypothetical protein 2587 65.20 0 2733580..2733783 + 67 77464552 - RSP_0972 - hypothetical protein 2588 68.60 0 2733784..2734815 + 343 77464553 - RSP_0973 - MaoC family protein 2589 65.10 0 2735026..2735409 + 127 77464554 - RSP_0974 - succinate dehydrogenase subunit C 2590 64.52 -1 2735421..2735792 + 123 77464555 - RSP_0975 - succinate dehydrogenase subunit D 2591 68.55 0 2735804..2737606 + 600 77464556 sdhA RSP_0976 - succinate dehydrogenase flavoprotein subunit 2592 73.52 +1 2737606..2737926 + 106 77464557 - RSP_0977 - hypothetical protein 2593 73.12 +1 2737930..2738208 + 92 77464558 - RSP_0978 - hypothetical protein 2594 63.33 -1 2738227..2739006 + 259 77464559 sdhB RSP_0979 - succinate dehydrogenase iron-sulfur subunit 2595 65.29 0 2739292..2739654 - 120 77464560 - RSP_6142 - hypothetical protein 2596 72.78 0 2739750..2740436 - 228 77464561 - RSP_0981 - GntR family transcriptional regulator 2597 72.63 0 2740433..2741119 - 228 77464562 - RSP_0982 - zinc metallopeptidase-like protein 2598 62.99 -1 2741231..2741611 + 126 77464563 - RSP_0983 - hypothetical protein 2599 73.33 +1 2742068..2742322 + 84 77464564 - RSP_6143 - hypothetical protein 2600 68.90 0 2742390..2744087 - 565 77464565 - RSP_0985 - adenine deaminase 2601 68.13 0 2744222..2745178 + 318 77464566 - RSP_0987 - RarD family transporter 2602 73.20 +1 2745175..2745771 - 198 77464567 frcK RSP_0986 - putative fructose transport system kinase 2603 67.18 0 2745768..2746544 - 258 77464568 - RSP_0988 - ABC sugar transporter, ATPase subunit 2604 66.85 0 2746544..2747635 - 363 77464569 - RSP_0989 - ABC sugar transporter, inner membrane subunit 2605 68.04 0 2747810..2748832 - 340 77464570 - RSP_0990 - ABC sugar transporter, periplasmic sugar binding subunit 2606 72.39 0 2749030..2750253 + 407 77464571 - RSP_0991 - ROK family transcriptional regulator 2607 68.14 0 2750378..2753227 + 949 77464572 phaA/B RSP_0992 - putative monovalent cation/H+ antiporter subunit A 2608 66.96 0 2753227..2753562 + 111 77464573 phaC RSP_0993 - putative monovalent cation/H+ antiporter subunit C 2609 69.91 0 2753559..2755070 + 503 77464574 phaD RSP_0994 - putative monovalent cation/H+ antiporter subunit D 2610 65.24 0 2755067..2755558 + 163 77464575 phaE RSP_0995 - putative monovalent cation/H+ antiporter subunit E 2611 64.81 0 2755555..2755824 + 89 77464576 phaF RSP_0996 - pH adaption potassium efflux system, PhaF subunit 2612 66.15 0 2755830..2756216 + 128 77464577 phaG RSP_0997 - pH adaption potassium efflux system, PhaG subunit 2613 64.74 0 2756350..2757648 + 432 77464578 nhaD RSP_0998 - Na+/H+ antiporter, NhaD 2614 66.85 0 2757701..2758255 - 184 77464579 - RSP_0999 - hypothetical protein 2615 73.18 +1 2758394..2759191 + 265 77464580 - RSP_1000 - hypothetical protein 2616 73.82 +1 2759368..2760150 - 260 77464581 - RSP_1001 - hypothetical protein 2617 66.77 0 2760267..2761229 + 320 77464582 pyrB RSP_1002 - aspartate carbamoyltransferase catalytic subunit 2618 71.60 0 2761226..2762503 + 425 77464583 pyrC RSP_1003 - dihydroorotase 2619 70.13 0 2762724..2763329 + 201 77464584 - RSP_1004 - acyl-phosphate glycerol-3-phosphate acyltransferase 2620 69.67 0 2763433..2764797 - 454 77464585 gshA RSP_1005 - putative glutathione synthetase 2621 74.07 +1 2764850..2765416 - 188 77464586 - RSP_1006 - hypothetical protein 68.78 MEAN 4.15 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0