IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2505	 66.54	0	2641537..2642325	-	262	77464470	vacJ	RSP_0891	-	putative lipoprotein
2506	 70.41	0	2642535..2644271	+	578	77464471	-	RSP_0892	-	protein toxin ABC transporter ATPase and inner membrane subunit
2507	 68.82	0	2644268..2645569	+	433	77464472	-	RSP_0893	-	RTX secretion protein D
2508	 70.37	0	2645693..2646151	+	152	77464473	-	RSP_0894	-	hypothetical protein
2509	 74.19	+1	2646151..2646921	+	256	77464474	-	RSP_0895	-	phosphodiesterase-like
2510	 71.00	0	2646991..2648235	+	414	77464475	-	RSP_0896	-	hypothetical protein
2511	 70.14	0	2648232..2648864	+	210	77464476	-	RSP_0897	-	glutathione S-transferase
2512	 67.38	0	2648857..2649135	+	92	77464477	DCOHM	RSP_0898	-	pterin-4-alpha-carbinolamine dehydratase
2513	 68.92	0	2649289..2649777	-	162	77464478	-	RSP_0899	-	thiol peroxidase (atypical 2-Cys peroxiredoxin)
2514	 72.89	0	2649878..2651083	+	401	77464479	-	RSP_0900	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2515	 73.15	+1	2651080..2651634	+	184	77464480	-	RSP_0901	-	N-6 adenine-specific DNA methylase
2516	 71.78	0	2651631..2652275	+	214	77464481	-	RSP_0902	-	hydrolase, haloacid dehalogenase-like hydrolase
2517	 70.46	0	2652348..2653427	+	359	77464482	-	RSP_0903	-	catalase
2518	 69.35	0	2653510..2654403	+	297	77464483	sitA	RSP_0904	-	ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA
2519	 71.03	0	2654400..2655293	+	297	77464484	sitB	RSP_0905	-	ABC Mn+2/Fe+2 transporter, ATPase subunit SitB
2520	 67.60	0	2655280..2656140	+	286	77464485	sitC	RSP_0906	-	ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC
2521	 69.02	0	2656137..2656985	+	282	77464486	sitD	RSP_0908	-	ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD
2522	 71.26	0	2656960..2657568	-	202	77464487	dctR	RSP_0907	-	two component LuxR family transcriptional regulator
2523	 73.16	+1	2657565..2659550	-	661	77464488	dctS	RSP_0909	-	PAS/PAC sensor signal transduction histidine kinase
2524	 65.47	0	2659690..2660694	+	334	77464489	dctP	RSP_0910	-	TRAP dicarboxylate family transporter DctP subunit
2525	 65.50	0	2660780..2661463	+	227	77464490	dctQ	RSP_0911	-	TRAP dicarboxylate family transporter DctQ subunit
2526	 65.91	0	2661465..2662790	+	441	77464491	dctM	RSP_0912	-	TRAP dicarboxylate family transporter DctM subunit
2527	 74.07	+1	2662916..2663536	-	206	77464492	crt	RSP_0913	-	enoyl-CoA hydratase
2528	 72.38	0	2663533..2664285	-	250	77464493	-	RSP_0914	-	Short-chain dehydrogenase/reductase SDR
2529	 67.91	0	2664409..2665938	+	509	77464494	-	RSP_0915	-	hypothetical protein
2530	 73.21	+1	2666209..2667552	+	447	77464495	pmbA	RSP_0916	-	microcin-processing peptidase 1
2531	 72.59	0	2667539..2668315	+	258	77464496	-	RSP_0917	-	inositol monophosphatase
2532	 65.66	0	2668563..2668760	-	65	77464497	-	RSP_0918	-	hypothetical protein
2533	 66.90	0	2668910..2669767	+	285	77464498	-	RSP_0919	-	Short-chain dehydrogenase/reductase SDR
2534	 74.29	+1	2670024..2671073	+	349	77464499	exbB	RSP_0920	-	biopolymer transport protein, ExbB
2535	 67.37	0	2671077..2671502	+	141	77464500	exbD	RSP_0921	-	biopolymer transport protein, ExbD
2536	 76.16	+1	2671499..2672383	+	294	77464501	-	RSP_0922	-	putative TonB protein
2537	 66.33	0	2672577..2673458	-	293	77464502	map1	RSP_0923	-	methionine aminopeptidase, type I
2538	 70.63	0	2673533..2674264	+	243	77464503	cinA	RSP_0924	-	nucleotide-utilizing enzyme/competence-damage associated protein
2539	 74.26	+1	2674268..2674978	+	236	77464504	yobR	RSP_0925	-	putative acetyl transferase
2540	 73.31	+1	2674975..2675907	+	310	77464505	-	RSP_0926	-	OmpA/MotB family protein
2541	 67.62	0	2675930..2676871	-	313	77464506	lyrS	RSP_0927	-	LysR family transcriptional regulator
2542	 72.76	0	2677461..2677985	-	174	77464507	-	RSP_0928	-	hypothetical protein
2543	 67.82	0	2678351..2679304	+	317	77464508	accD	RSP_0929	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
2544	 72.39	0	2679301..2680575	+	424	77464509	folC	RSP_0930	-	folylpolyglutamate synthetase
2545	 67.48	0	2680710..2681198	-	162	77464510	ialA	RSP_0931	-	NUDIX hydrolase
2546	 68.30	0	2681206..2682552	-	448	77464511	ctpA	RSP_0932	-	S41 family peptidase
2547	 73.41	+1	2682560..2683672	-	370	77464512	-	RSP_0933	-	hypothetical protein
2548	 69.36	0	2683669..2685189	-	506	77464513	gpmI	RSP_0934	-	phosphoglyceromutase
2549	 69.87	0	2685220..2686497	-	425	77464514	-	RSP_0935	-	MiaB-like radical SAM protein
2550	 72.92	0	2686494..2687324	-	276	77464515	dapF	RSP_0936	-	diaminopimelate epimerase
2551	 66.61	0	2687731..2689377	+	548	77464516	-	RSP_0937	-	alpha amylase domain-containing protein
2552	 65.79	0	2689471..2689698	+	75	77464517	-	RSP_0938	-	hypothetical protein
2553	 70.64	0	2689898..2690677	+	259	77464518	-	RSP_0939	-	hypothetical protein
2554	 68.85	0	2690826..2691833	+	335	77464519	-	RSP_0940	-	ABC transporter, periplasmic substrate binding protein
2555	 70.69	0	2691891..2692784	+	297	77464520	-	RSP_0941	-	ABC transporter, ATPase subunit
2556	 65.75	0	2692784..2693548	+	254	77464521	-	RSP_0942	-	ABC transporter, inner membrane subunit
2557	 66.02	0	2693657..2695039	+	460	77464522	yhxA	RSP_0943	-	aminotransferase
2558	 65.99	0	2695350..2696234	+	294	77464523	purU	RSP_0944	-	formyltetrahydrofolate deformylase
2559	 71.34	0	2696305..2697930	-	541	77464524	-	RSP_0945	-	major facilitator transporter
2560	 71.30	0	2698229..2699263	+	344	77464525	-	RSP_0946	-	putative DNA topoisomerase I protein
2561	 63.44	-1	2699398..2699583	-	61	77464526	-	RSP_0947	-	hypothetical protein
2562	 71.43	0	2699839..2700363	+	174	77464527	-	RSP_6141	-	hypothetical protein
2563	 67.23	0	2700416..2701828	-	470	77464528	otsA	RSP_0948	-	OtsA trehalose-6-phosphate synthase
2564	 71.52	0	2701825..2702607	-	260	77464529	ostB	RSP_0949	-	putative trehalose-6-phosphate phosphatase
2565	 74.92	+1	2702774..2704384	-	536	77464530	-	RSP_0950	-	arginine utilization protein RocB
2566	 68.47	0	2704729..2704950	-	73	77464531	-	RSP_0951	-	hypothetical protein
2567	 72.66	0	2704982..2705866	-	294	77464532	-	RSP_0952	-	transglutaminase-like protein
2568	 72.62	0	2705867..2708251	-	794	77464533	-	RSP_0953	-	hypothetical protein
2569	 70.67	0	2708251..2711772	-	1173	77464534	-	RSP_0954	-	transglutaminase-like domain-containing protein
2570	 66.79	0	2711808..2713379	-	523	77464535	-	RSP_0955	-	5'-nucleotidase
2571	 65.78	0	2713538..2713876	+	112	77464536	-	RSP_0956	-	hypothetical protein
2572	 73.43	+1	2713873..2714937	+	354	77464537	pyrD	RSP_0957	-	dihydroorotate dehydrogenase 2
2573	 60.34	-2	2715109..2715345	-	78	77464538	-	RSP_0958	-	AsnC family transcriptional regulator
2574	 70.72	0	2715617..2717317	-	566	77464539	-	RSP_0959	-	ATPase
2575	 65.35	0	2717534..2718826	-	430	77464540	-	RSP_0960	-	alcohol dehydrogenase
2576	 68.91	0	2719198..2721156	+	652	77464541	MeaA	RSP_0961	-	methylmalonyl-CoA mutase
2577	 67.31	0	2721358..2722746	-	462	77464542	-	RSP_0962	-	dihydrolipoamide dehydrogenase
2578	 68.18	0	2722861..2723256	-	131	77464543	-	RSP_0963	-	inner membrane protein
2579	 68.75	0	2723312..2724844	-	510	77464544	sucB	RSP_0964	-	dihydrolipoamide acetyltransferase
2580	 65.25	0	2724844..2727807	-	987	161723326	kgd	RSP_0965	-	alpha-ketoglutarate decarboxylase
2581	 66.89	0	2727862..2728746	-	294	77464546	sucD	RSP_0966	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
2582	 64.99	0	2728751..2729944	-	397	77464547	sucC	RSP_0967	-	succinyl-CoA synthetase subunit beta
2583	 66.15	0	2730174..2731136	-	320	161723325	mdh	RSP_0968	-	malate dehydrogenase
2584	 67.75	0	2731339..2732076	+	245	77464549	-	RSP_0969	-	putative integral membrane protein
2585	 68.07	0	2732163..2733020	+	285	77464550	-	RSP_0970	-	putative citrate lyase beta chain
2586	 65.59	0	2733029..2733583	+	184	77464551	-	RSP_0971	-	hypothetical protein
2587	 65.20	0	2733580..2733783	+	67	77464552	-	RSP_0972	-	hypothetical protein
2588	 68.60	0	2733784..2734815	+	343	77464553	-	RSP_0973	-	MaoC family protein
2589	 65.10	0	2735026..2735409	+	127	77464554	-	RSP_0974	-	succinate dehydrogenase subunit C
2590	 64.52	-1	2735421..2735792	+	123	77464555	-	RSP_0975	-	succinate dehydrogenase subunit D
2591	 68.55	0	2735804..2737606	+	600	77464556	sdhA	RSP_0976	-	succinate dehydrogenase flavoprotein subunit
2592	 73.52	+1	2737606..2737926	+	106	77464557	-	RSP_0977	-	hypothetical protein
2593	 73.12	+1	2737930..2738208	+	92	77464558	-	RSP_0978	-	hypothetical protein
2594	 63.33	-1	2738227..2739006	+	259	77464559	sdhB	RSP_0979	-	succinate dehydrogenase iron-sulfur subunit
2595	 65.29	0	2739292..2739654	-	120	77464560	-	RSP_6142	-	hypothetical protein
2596	 72.78	0	2739750..2740436	-	228	77464561	-	RSP_0981	-	GntR family transcriptional regulator
2597	 72.63	0	2740433..2741119	-	228	77464562	-	RSP_0982	-	zinc metallopeptidase-like protein
2598	 62.99	-1	2741231..2741611	+	126	77464563	-	RSP_0983	-	hypothetical protein
2599	 73.33	+1	2742068..2742322	+	84	77464564	-	RSP_6143	-	hypothetical protein
2600	 68.90	0	2742390..2744087	-	565	77464565	-	RSP_0985	-	adenine deaminase
2601	 68.13	0	2744222..2745178	+	318	77464566	-	RSP_0987	-	RarD family transporter
2602	 73.20	+1	2745175..2745771	-	198	77464567	frcK	RSP_0986	-	putative fructose transport system kinase
2603	 67.18	0	2745768..2746544	-	258	77464568	-	RSP_0988	-	ABC sugar transporter, ATPase subunit
2604	 66.85	0	2746544..2747635	-	363	77464569	-	RSP_0989	-	ABC sugar transporter, inner membrane subunit
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.