IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2405	 69.52	0	2538620..2539039	-	139	77464370	-	RSP_0795	-	hypothetical protein
2406	 73.17	+1	2539186..2540631	+	481	77464371	cobQ	RSP_0796	-	cobyric acid synthase
2407	 70.83	0	2540682..2541065	+	127	77464372	-	RSP_6229	-	hypothetical protein
2408	 68.02	0	2541066..2542391	-	441	77464373	gltX	RSP_0797	-	glutamyl-tRNA synthetase
2409	 67.15	0	2542704..2543114	+	136	77464374	-	RSP_0798	-	neutral zinc metallopeptidase
2410	 70.22	0	2543202..2544131	+	309	77464375	-	RSP_0799	-	hypothetical protein
2411	 74.42	+1	2544351..2544608	-	85	77464376	-	RSP_0800	-	hypothetical protein
2412	 72.81	0	2544668..2545807	+	379	77464377	-	RSP_0801	-	deacetylase / acetylpolyamine aminohydrolase
2413	 69.76	0	2546149..2547216	-	355	77464378	-	RSP_0802	-	dipeptidase AC
2414	 71.03	0	2547213..2547968	-	251	77464379	DppF	RSP_0803	-	ABC dipeptide transporter, ATPase subunit DppF
2415	 72.12	0	2547968..2548792	-	274	77464380	DppD	RSP_0804	-	ABC dipeptide transporter, ATPase subunit DppD
2416	 71.32	0	2548893..2549795	-	300	77464381	DppC	RSP_0805	-	ABC dipeptide transporter, inner membrane subunit DppC
2417	 68.25	0	2549792..2550862	-	356	77464382	DppB	RSP_0806	-	ABC dipeptide transporter, inner membrane subunit DppB
2418	 64.01	-1	2550863..2552479	-	538	77464383	DdpA	RSP_0807	-	ABC dipeptide transporter, substrate-binding subunit DdpA
2419	 72.88	0	2552780..2553358	+	192	77464384	-	RSP_0809	-	hypothetical protein
2420	 67.10	0	2553355..2554047	+	230	77464385	-	RSP_0810	-	hypothetical protein
2421	 68.44	0	2554062..2554343	-	93	77464386	-	RSP_0811	-	hypothetical protein
2422	 67.65	0	2554340..2554744	-	134	77464387	-	RSP_0812	-	methylmalonyl-CoA epimerase
2423	 74.93	+1	2555003..2555704	+	233	77464388	-	RSP_0813	-	response regulator receiver protein
2424	 70.73	0	2555865..2556578	-	237	77464389	-	RSP_0814	-	acetyltransferase
2425	 67.12	0	2556582..2558357	-	591	77464390	aspS	RSP_0815	-	aspartyl-tRNA synthetase
2426	 75.73	+1	2558573..2559157	-	194	77464391	-	RSP_0816	-	hypothetical protein
2427	 71.36	0	2559166..2560338	-	390	77464392	-	RSP_0817	-	para-aminobenzoate synthase component I
2428	 67.99	0	2560500..2563829	+	1109	161723327	carB	RSP_0818	-	carbamoyl phosphate synthase large subunit
2429	 70.85	0	2564430..2565815	+	461	77464394	rhlE2	RSP_0819	-	DEAD/DEAH box helicase
2430	 62.15	-1	2566177..2566353	+	58	77464395	-	RSP_6134	-	hypothetical protein
2431	 67.25	0	2566383..2566892	+	169	77464396	-	RSP_0820	-	putative cytochrome B561
2432	 70.82	0	2566932..2567702	-	256	77464397	-	RSP_0821	-	esterase/lipase/thioesterase
2433	 70.37	0	2567790..2568167	+	125	77464398	-	RSP_0822	-	hypothetical protein
2434	 68.13	0	2568235..2569530	-	431	77464399	SHMT	RSP_0823	-	serine hydroxymethyltransferase
2435	 70.20	0	2569697..2570461	+	254	77464400	ppnK	RSP_0825	-	inorganic polyphosphate/ATP-NAD kinase
2436	 70.06	0	2570458..2571135	-	225	77464401	pth	RSP_0824	-	peptidyl-tRNA hydrolase
2437	 67.30	0	2571267..2571581	+	104	77464402	-	RSP_0826	-	hypothetical protein
2438	 63.56	-1	2571882..2572493	-	203	77464403	-	RSP_0827	-	50S ribosomal protein L25/general stress protein Ctc
2439	 76.34	+1	2572791..2573948	+	385	77464404	-	RSP_0828	-	major facilitator transporter
2440	 67.53	0	2573953..2575116	-	387	77464405	lctB	RSP_0829	-	lactate dehydrogenase
2441	 74.39	+1	2575463..2576563	-	366	77464406	-	RSP_0830	-	CBS domain-containing protein
2442	 70.83	0	2576608..2577399	-	263	77464407	trpA	RSP_0831	-	tryptophan synthase subunit alpha
2443	 79.63	+2	2577453..2577668	-	71	77464408	thi	RSP_6135	-	thiamine biosynthetic protein
2444	 69.03	0	2577892..2578989	+	365	77464409	-	RSP_0832	-	translation-associated GTPase
2445	 70.79	0	2579330..2580784	+	484	77464410	xanB	RSP_0834	-	mannose-1-phosphate guanylyltransferase (GDP)
2446	 71.31	0	2580781..2582157	+	458	77464411	manB	RSP_0835	-	phosphomannomutase
2447	 71.03	0	2582403..2584784	+	793	77464412	-	RSP_6136	-	hypothetical protein
2448	 75.23	+1	2584944..2586122	+	392	77464413	-	RSP_0836	-	putative flavoprotein
2449	 67.24	0	2586097..2586792	-	231	77464414	-	RSP_0837	-	hypothetical protein
2450	 71.80	0	2586898..2587890	-	330	77464415	-	RSP_0838	-	DNA polymerase III, delta subunit
2451	 68.71	0	2587887..2588375	-	162	77464416	-	RSP_0839	-	secreted periplasmic protein
2452	 67.41	0	2588362..2590905	-	847	77464417	leuS	RSP_0840	-	leucyl-tRNA synthetase
2453	 71.77	0	2590937..2591563	-	208	77464418	-	RSP_0841	-	hypothetical protein
2454	 64.25	-1	2591847..2592839	+	330	77464419	-	RSP_0842	-	putative porin
2455	 78.10	+2	2592961..2594010	-	349	77464420	-	RSP_6212	-	hypothetical protein
2456	 68.63	0	2594180..2595148	+	322	77464421	-	RSP_0843	-	hypothetical protein
2457	 71.92	0	2595141..2595806	+	221	77464422	-	RSP_0844	-	hypothetical protein
2458	 73.74	+1	2595826..2596320	-	164	77464423	-	RSP_0845	-	hypothetical protein
2459	 72.08	0	2596317..2597405	-	362	77464424	ribA	RSP_0846	-	GTP cyclohydrolase II
2460	 60.84	-1	2597558..2598244	+	228	77464425	-	RSP_0847	-	two component transcriptional regulator
2461	 66.29	0	2598593..2599381	+	262	77464426	xthA1	RSP_0848	-	exodeoxyribonuclease III
2462	 70.19	0	2599412..2600035	-	207	77464427	-	RSP_6137	-	TetR family transcriptional regulator
2463	 69.77	0	2600087..2600215	-	42	77464428	-	RSP_6138	-	hypothetical protein
2464	 70.25	0	2600381..2601358	+	325	77464429	-	RSP_0850	-	hypothetical protein
2465	 68.82	0	2601717..2602646	+	309	77464430	-	RSP_0851	-	AEC family transporter
2466	 66.55	0	2602662..2603492	+	276	77464431	fghA	RSP_0852	-	S-formylglutathione hydrolase
2467	 70.35	0	2603485..2603973	+	162	77464432	-	RSP_0853	-	hypothetical protein
2468	 68.97	0	2603970..2604881	+	303	77464433	-	RSP_0854	-	ornithine cyclodeaminase
2469	 74.57	+1	2604886..2605530	-	214	77464434	-	RSP_0855	-	hypothetical protein
2470	 72.82	0	2605905..2607155	+	416	77464435	btaA	RSP_0856	-	S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase
2471	 73.78	+1	2607152..2607784	+	210	77464436	btaB	RSP_0857	-	S-adenosylmethionine-diacylgycerolhomoserine-N-methlytransferase
2472	 67.82	0	2608190..2609143	-	317	77464437	-	RSP_0858	-	RhaT family transporter
2473	 67.99	0	2609508..2610563	-	351	77464438	leuB	RSP_0859	-	3-isopropylmalate dehydrogenase
2474	 75.59	+1	2610714..2611643	-	309	77464439	-	RSP_0860	-	hypothetical protein
2475	 69.16	0	2611724..2612647	-	307	77464440	-	RSP_0861	-	hypothetical protein
2476	 62.38	-1	2612799..2613404	-	201	77464441	leuD	RSP_0862	-	isopropylmalate isomerase small subunit
2477	 68.57	0	2613408..2613932	-	174	77464442	-	RSP_6139	-	hypothetical protein
2478	 67.79	0	2613996..2615423	-	475	77464443	leuC	RSP_0863	-	isopropylmalate isomerase large subunit
2479	 69.70	0	2615616..2616209	+	197	77464444	-	RSP_0864	-	hypothetical protein
2480	 65.11	0	2616422..2616742	+	106	77464445	-	RSP_0865	-	hypothetical protein
2481	 71.58	0	2616742..2617209	+	155	77464446	-	RSP_0866	-	hypothetical protein
2482	 68.94	0	2617237..2617764	+	175	77464447	rnhA	RSP_0867	-	ribonuclease H
2483	 75.41	+1	2617797..2618288	+	163	77464448	-	RSP_0868	-	putative transcriptional regulator
2484	 63.64	-1	2618532..2618894	+	120	77464449	osp	RSP_0869	-	response regulator receive protein
2485	 68.09	0	2619006..2619356	+	116	77464450	-	RSP_0870	-	hypothetical protein
2486	 67.52	0	2619363..2620535	-	390	77464451	patB	RSP_0871	-	putative aminotransferase
2487	 67.23	0	2620676..2621209	+	177	77464452	def1	RSP_0872	-	peptide deformylase
2488	 73.37	+1	2621209..2621700	+	163	77464453	-	RSP_0873	-	N-formylmethionyl tRNA deformylase
2489	 66.27	0	2621697..2622200	+	167	77464454	-	RSP_0874	-	formylmethionine deformylase
2490	 73.05	+1	2622204..2623112	+	302	77464455	fmt	RSP_0875	-	methionyl-tRNA formyltransferase
2491	 74.54	+1	2623205..2626660	-	1151	77464456	-	RSP_0876	-	chromosome segregation protein SMC2
2492	 73.05	+1	2626798..2627283	+	161	77464457	-	RSP_0878	-	putative acetyltransferase protein
2493	 70.17	0	2627234..2628118	-	294	77464458	-	RSP_0877	-	RhaT family transporter
2494	 73.53	+1	2628115..2628915	-	266	77464459	-	RSP_0879	-	hypothetical protein
2495	 73.92	+1	2628970..2630031	+	353	77464460	dadA	RSP_0880	-	oxidoreductase
2496	 74.82	+1	2630264..2632225	-	653	77464461	-	RSP_0881	-	putative soluble lytic transglycosylase
2497	 68.69	0	2632363..2633250	+	295	77464462	dapA	RSP_0882	-	dihydrodipicolinate synthase
2498	 63.50	-1	2633511..2633984	+	157	77464463	smpB	RSP_0883	-	SsrA-binding protein
2499	 69.26	0	2634274..2635122	+	282	77464464	SseA	RSP_0885	-	thiosulfate sulfurtransferase, rhodanese-like
2500	 69.11	0	2635130..2636314	+	394	77464465	TyrB	RSP_0886	-	aromatic amino acid aminotransferase
2501	 66.15	0	2636500..2637852	-	450	77464466	amtB	RSP_0888	-	ammonium transporter
2502	 63.72	-1	2637879..2638217	-	112	77464467	glnK	RSP_0889	-	nitrogen regulatory protein P-II
2503	 69.91	0	2638379..2640874	+	831	77464468	MrcB	RSP_0887	-	glycosyl transferase family protein
2504	 68.59	0	2640924..2641547	-	207	77464469	-	RSP_0890	-	hypothetical protein
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.