IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2363	 63.57	-1	2496345..2497217	-	290	77464328	SspA	RSP_0753	-	Salt-stress induced outer membrane protein
2364	 63.86	-1	2497425..2497745	-	106	77464329	-	RSP_0754	-	hypothetical protein
2365	 66.88	0	2498062..2498529	-	155	77464330	nusB	RSP_0755	-	NusB antitermination factor
2366	 69.65	0	2498532..2499068	-	178	77464331	ribH1	RSP_0756	-	6,7-dimethyl-8-ribityllumazine synthase
2367	 67.30	0	2499072..2500175	-	367	77464332	ribBA	RSP_0757	-	GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
2368	 74.33	+1	2500488..2501048	-	186	77464333	-	RSP_6130	-	hypothetical protein
2369	 68.17	0	2501050..2501646	-	198	77464334	-	RSP_0758	-	riboflavin synthase subunit alpha
2370	 69.13	0	2501868..2503004	+	378	77464335	-	RSP_0759	-	putative capsule polysaccharide exporter
2371	 61.76	-1	2503434..2503943	-	169	77464336	mucS	RSP_0760	-	MarR family transcriptional regulator
2372	 68.89	0	2504021..2504290	-	89	77464337	-	RSP_0761	-	hypothetical protein
2373	 69.67	0	2504287..2504685	-	132	77464338	-	RSP_0762	-	XRE family transcriptional regulator
2374	 67.66	0	2504800..2506002	+	400	77464339	aatA	RSP_0763	-	aspartate aminotransferase
2375	 69.62	0	2506086..2507441	-	451	77464340	-	RSP_0764	-	MATE family efflux pump NorM
2376	 71.34	0	2507492..2508133	-	213	77464341	-	RSP_0765	-	SAM-dependent methyltransferase
2377	 66.77	0	2508130..2509140	-	336	77464342	-	RSP_0766	-	hypothetical protein
2378	 75.04	+1	2509378..2510082	-	234	77464343	-	RSP_6131	-	hypothetical protein
2379	 75.16	+1	2510174..2511115	-	313	77464344	-	RSP_0768	-	LuxR family transcriptional regulator
2380	 71.97	0	2511204..2511863	+	219	77464345	-	RSP_0769	-	glutathione S-transferase
2381	 66.37	0	2511924..2513915	+	663	77464346	parE	RSP_0772	-	DNA topoisomerase IV subunit B
2382	 70.35	0	2514134..2515354	-	406	77464347	-	RSP_0773	-	mannonate dehydratase
2383	 71.19	0	2515853..2518174	-	773	77464348	-	RSP_0774	-	RNA binding protein
2384	 69.52	0	2518258..2518677	-	139	77464349	-	RSP_0775	-	class I monoheme cytochrome c
2385	 73.19	+1	2518706..2519380	-	224	77464350	LolD	RSP_0776	-	ABC lipoprotein efflux transporter, ATPase subunit, LolD
2386	 68.53	0	2519373..2520659	-	428	77464351	LolE	RSP_0777	-	ABC lipoprotein efflux transporter, inner membrane subunit, LolE
2387	 66.14	0	2520775..2522112	-	445	77464352	ProS	RSP_0778	-	prolyl-tRNA synthetase
2388	 67.46	0	2522512..2523639	+	375	77464353	perM	RSP_0779	-	Lipocalin-related protein and Bos/Can/Equ allergen
2389	 73.57	+1	2523636..2524316	+	226	77464354	-	RSP_0780	-	hypothetical protein
2390	 67.40	0	2524376..2526562	+	728	77464355	-	RSP_0781	-	polyphosphate kinase
2391	 69.65	0	2526699..2528240	+	513	77464356	-	RSP_0782	-	Ppx/GppA phosphatase
2392	 73.96	+1	2528237..2528839	+	200	77464357	-	RSP_0783	-	hypothetical protein
2393	 69.39	0	2528862..2529338	+	158	77464358	-	RSP_0784	-	GNAT family acetyltransferase
2394	 70.61	0	2529370..2530053	+	227	77464359	-	RSP_0785	-	putative heat shock protein DnaJ
2395	 68.04	0	2530054..2531073	+	339	77464360	-	RSP_0786	-	endonuclease/exonuclease/phosphatase fa
2396	 72.42	0	2531589..2532005	+	138	77464361	-	RSP_0787	-	hypothetical protein
2397	 78.54	+2	2532002..2532835	+	277	77464362	-	RSP_0788	-	hypothetical protein
2398	 74.67	+1	2532845..2533819	+	324	77464363	cobC	RSP_0789	-	aminotransferase
2399	 71.30	0	2533887..2535029	-	380	77464364	pqqE	RSP_0790	-	pyrroloquinoline quinone biosynthesis protein PqqE
2400	 68.69	0	2535029..2535325	-	98	77464365	pqqD	RSP_0791	-	putative pyrroloquinoline quinone synthesis protein D
2401	 67.97	0	2535322..2536089	-	255	77464366	pqqC	RSP_0792	-	pyrroloquinoline quinone biosynthesis protein PqqC
2402	 71.76	0	2536086..2536988	-	300	77464367	pqqB	RSP_0793	-	pyrroloquinoline quinone biosynthesis protein PqqB
2403	 56.79	-2	2537007..2537087	-	26	77464368	pqqA	RSP_6132	-	putative coenzyme PQQ synthesis protein A
2404	 71.91	0	2537318..2538499	-	393	77464369	catR	RSP_0794	-	LysR family transcriptional regulator
2405	 69.52	0	2538620..2539039	-	139	77464370	-	RSP_0795	-	hypothetical protein
2406	 73.17	+1	2539186..2540631	+	481	77464371	cobQ	RSP_0796	-	cobyric acid synthase
2407	 70.83	0	2540682..2541065	+	127	77464372	-	RSP_6229	-	hypothetical protein
2408	 68.02	0	2541066..2542391	-	441	77464373	gltX	RSP_0797	-	glutamyl-tRNA synthetase
2409	 67.15	0	2542704..2543114	+	136	77464374	-	RSP_0798	-	neutral zinc metallopeptidase
2410	 70.22	0	2543202..2544131	+	309	77464375	-	RSP_0799	-	hypothetical protein
2411	 74.42	+1	2544351..2544608	-	85	77464376	-	RSP_0800	-	hypothetical protein
2412	 72.81	0	2544668..2545807	+	379	77464377	-	RSP_0801	-	deacetylase / acetylpolyamine aminohydrolase
2413	 69.76	0	2546149..2547216	-	355	77464378	-	RSP_0802	-	dipeptidase AC
2414	 71.03	0	2547213..2547968	-	251	77464379	DppF	RSP_0803	-	ABC dipeptide transporter, ATPase subunit DppF
2415	 72.12	0	2547968..2548792	-	274	77464380	DppD	RSP_0804	-	ABC dipeptide transporter, ATPase subunit DppD
2416	 71.32	0	2548893..2549795	-	300	77464381	DppC	RSP_0805	-	ABC dipeptide transporter, inner membrane subunit DppC
2417	 68.25	0	2549792..2550862	-	356	77464382	DppB	RSP_0806	-	ABC dipeptide transporter, inner membrane subunit DppB
2418	 64.01	-1	2550863..2552479	-	538	77464383	DdpA	RSP_0807	-	ABC dipeptide transporter, substrate-binding subunit DdpA
2419	 72.88	0	2552780..2553358	+	192	77464384	-	RSP_0809	-	hypothetical protein
2420	 67.10	0	2553355..2554047	+	230	77464385	-	RSP_0810	-	hypothetical protein
2421	 68.44	0	2554062..2554343	-	93	77464386	-	RSP_0811	-	hypothetical protein
2422	 67.65	0	2554340..2554744	-	134	77464387	-	RSP_0812	-	methylmalonyl-CoA epimerase
2423	 74.93	+1	2555003..2555704	+	233	77464388	-	RSP_0813	-	response regulator receiver protein
2424	 70.73	0	2555865..2556578	-	237	77464389	-	RSP_0814	-	acetyltransferase
2425	 67.12	0	2556582..2558357	-	591	77464390	aspS	RSP_0815	-	aspartyl-tRNA synthetase
2426	 75.73	+1	2558573..2559157	-	194	77464391	-	RSP_0816	-	hypothetical protein
2427	 71.36	0	2559166..2560338	-	390	77464392	-	RSP_0817	-	para-aminobenzoate synthase component I
2428	 67.99	0	2560500..2563829	+	1109	161723327	carB	RSP_0818	-	carbamoyl phosphate synthase large subunit
2429	 70.85	0	2564430..2565815	+	461	77464394	rhlE2	RSP_0819	-	DEAD/DEAH box helicase
2430	 62.15	-1	2566177..2566353	+	58	77464395	-	RSP_6134	-	hypothetical protein
2431	 67.25	0	2566383..2566892	+	169	77464396	-	RSP_0820	-	putative cytochrome B561
2432	 70.82	0	2566932..2567702	-	256	77464397	-	RSP_0821	-	esterase/lipase/thioesterase
2433	 70.37	0	2567790..2568167	+	125	77464398	-	RSP_0822	-	hypothetical protein
2434	 68.13	0	2568235..2569530	-	431	77464399	SHMT	RSP_0823	-	serine hydroxymethyltransferase
2435	 70.20	0	2569697..2570461	+	254	77464400	ppnK	RSP_0825	-	inorganic polyphosphate/ATP-NAD kinase
2436	 70.06	0	2570458..2571135	-	225	77464401	pth	RSP_0824	-	peptidyl-tRNA hydrolase
2437	 67.30	0	2571267..2571581	+	104	77464402	-	RSP_0826	-	hypothetical protein
2438	 63.56	-1	2571882..2572493	-	203	77464403	-	RSP_0827	-	50S ribosomal protein L25/general stress protein Ctc
2439	 76.34	+1	2572791..2573948	+	385	77464404	-	RSP_0828	-	major facilitator transporter
2440	 67.53	0	2573953..2575116	-	387	77464405	lctB	RSP_0829	-	lactate dehydrogenase
2441	 74.39	+1	2575463..2576563	-	366	77464406	-	RSP_0830	-	CBS domain-containing protein
2442	 70.83	0	2576608..2577399	-	263	77464407	trpA	RSP_0831	-	tryptophan synthase subunit alpha
2443	 79.63	+2	2577453..2577668	-	71	77464408	thi	RSP_6135	-	thiamine biosynthetic protein
2444	 69.03	0	2577892..2578989	+	365	77464409	-	RSP_0832	-	translation-associated GTPase
2445	 70.79	0	2579330..2580784	+	484	77464410	xanB	RSP_0834	-	mannose-1-phosphate guanylyltransferase (GDP)
2446	 71.31	0	2580781..2582157	+	458	77464411	manB	RSP_0835	-	phosphomannomutase
2447	 71.03	0	2582403..2584784	+	793	77464412	-	RSP_6136	-	hypothetical protein
2448	 75.23	+1	2584944..2586122	+	392	77464413	-	RSP_0836	-	putative flavoprotein
2449	 67.24	0	2586097..2586792	-	231	77464414	-	RSP_0837	-	hypothetical protein
2450	 71.80	0	2586898..2587890	-	330	77464415	-	RSP_0838	-	DNA polymerase III, delta subunit
2451	 68.71	0	2587887..2588375	-	162	77464416	-	RSP_0839	-	secreted periplasmic protein
2452	 67.41	0	2588362..2590905	-	847	77464417	leuS	RSP_0840	-	leucyl-tRNA synthetase
2453	 71.77	0	2590937..2591563	-	208	77464418	-	RSP_0841	-	hypothetical protein
2454	 64.25	-1	2591847..2592839	+	330	77464419	-	RSP_0842	-	putative porin
2455	 78.10	+2	2592961..2594010	-	349	77464420	-	RSP_6212	-	hypothetical protein
2456	 68.63	0	2594180..2595148	+	322	77464421	-	RSP_0843	-	hypothetical protein
2457	 71.92	0	2595141..2595806	+	221	77464422	-	RSP_0844	-	hypothetical protein
2458	 73.74	+1	2595826..2596320	-	164	77464423	-	RSP_0845	-	hypothetical protein
2459	 72.08	0	2596317..2597405	-	362	77464424	ribA	RSP_0846	-	GTP cyclohydrolase II
2460	 60.84	-1	2597558..2598244	+	228	77464425	-	RSP_0847	-	two component transcriptional regulator
2461	 66.29	0	2598593..2599381	+	262	77464426	xthA1	RSP_0848	-	exodeoxyribonuclease III
2462	 70.19	0	2599412..2600035	-	207	77464427	-	RSP_6137	-	TetR family transcriptional regulator
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.