IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2219	 54.58	-2	2351902..2352414	+	170	77464184	-	RSP_0613	-	hypothetical protein
2220	 65.66	0	2352461..2352757	+	98	77464185	-	RSP_0614	-	hypothetical protein
2221	 65.90	0	2352823..2353740	-	305	77464186	-	RSP_0615	-	putative oxidoreductase
2222	 70.70	0	2353834..2354577	+	247	77464187	-	RSP_0616	-	AraC family transcriptional regulator
2223	 65.59	0	2354634..2355188	+	184	77464188	-	RSP_0617	-	hypothetical protein
2224	 73.77	+1	2355164..2355346	-	60	77464189	-	RSP_0618	-	hypothetical protein
2225	 58.91	-2	2355658..2356044	+	128	77464190	-	RSP_0619	-	hypothetical protein
2226	 68.09	0	2356138..2356488	+	116	77464191	-	RSP_0620	-	hypothetical protein
2227	 68.08	0	2356523..2361670	+	1715	77464192	-	RSP_0621	-	DNA helicase
2228	 72.68	0	2362113..2362295	-	60	77464193	-	RSP_0623	-	hypothetical protein
2229	 73.47	+1	2362292..2363335	-	347	77464194	-	RSP_0624	-	hypothetical protein
2230	 72.37	0	2363332..2363910	-	192	77464195	-	RSP_0625	-	putative Maf-like protein
2231	 56.16	-2	2363911..2364129	-	72	77464196	infA	RSP_0626	-	translation initiation factor IF-1
2232	 70.89	0	2364304..2365179	-	291	77464197	-	RSP_0627	-	putative amidohydrolase
2233	 69.90	0	2365199..2365786	-	195	77464198	-	RSP_0628	-	hypothetical protein
2234	 66.67	0	2365783..2366184	-	133	77464199	-	RSP_0629	-	hypothetical protein
2235	 65.85	0	2366171..2366662	-	163	77464200	-	RSP_0630	-	hypothetical protein
2236	 66.04	0	2366659..2367135	-	158	77464201	-	RSP_0631	-	hypothetical protein
2237	 72.80	0	2367139..2368443	-	434	77464202	hisD	RSP_0632	-	histidinol dehydrogenase
2238	 72.71	0	2368665..2369144	-	159	77464203	-	RSP_6122	-	hypothetical protein
2239	 70.06	0	2369144..2370412	-	422	77464204	-	RSP_0633	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2240	 66.82	0	2371214..2372521	-	435	77464205	-	RSP_0634	-	TRAP dicarboxylate family transporter DctM subunit
2241	 60.69	-1	2372531..2373049	-	172	77464206	-	RSP_0635	-	TRAP dicarboxylate family transporter DctQ subunit
2242	 66.22	0	2373108..2374232	-	374	77464207	-	RSP_0636	-	TRAP dicarboxylate family transporter DctP subunit
2243	 74.38	+1	2374319..2375044	-	241	77464208	-	RSP_0637	-	hypothetical protein
2244	 72.93	0	2375041..2376333	-	430	77464209	-	RSP_0638	-	putative FAD dependent oxidoreductase protein
2245	 68.34	0	2376335..2378011	-	558	77464210	-	RSP_0639	-	putative N-methylhydantoinase B
2246	 70.58	0	2378015..2380033	-	672	77464211	-	RSP_0640	-	putative N-methylhydantoinase A
2247	 68.40	0	2380273..2380908	+	211	77464212	-	RSP_0641	-	XRE family transcriptional regulator
2248	 71.64	0	2380915..2381859	+	314	77464213	-	RSP_0642	-	RhaT family protein
2249	 70.88	0	2382164..2384014	+	616	77464214	-	RSP_0643	-	periplasmic sensor signal transduction histidine kinase
2250	 73.64	+1	2384018..2384734	-	238	77464215	-	RSP_0644	-	ABC transporter, inner membrane subunit
2251	 76.21	+1	2384731..2385411	-	226	77464216	-	RSP_0645	-	ABC transporter, ATPase subunit
2252	 69.02	0	2385411..2386346	-	311	77464217	-	RSP_0646	-	ABC transporter, substrate-binding protein
2253	 72.76	0	2386343..2387146	-	267	77464218	thiD	RSP_0647	-	phosphomethylpyrimidine kinase
2254	 75.65	+1	2387143..2387754	-	203	77464219	thiE	RSP_0648	-	thiamine-phosphate pyrophosphorylase
2255	 73.38	+1	2387751..2388539	-	262	77464220	thiM	RSP_0649	-	putative hydoxyethylthiazole kinase
2256	 66.89	0	2388918..2389370	-	150	77464221	-	RSP_0650	-	transglycosylase
2257	 71.07	0	2389367..2390161	-	264	77464222	-	RSP_0651	-	putative inositol monophosphatase protein
2258	 68.69	0	2390172..2391158	-	328	77464223	-	RSP_0652	-	UDP-galactose 4-epimerase
2259	 66.67	0	2391168..2392472	-	434	77464224	-	RSP_0653	-	UDP-glucose 6-dehydrogenase
2260	 70.29	0	2392540..2393451	-	303	77464225	-	RSP_0654	-	DMT family permease
2261	 63.99	-1	2393628..2394374	-	248	77464226	-	RSP_0655	-	hypothetical protein
2262	 67.45	0	2394469..2396247	-	592	77464227	-	RSP_0656	-	sodium/sulphate symporter
2263	 69.26	0	2396360..2397169	-	269	77464228	-	RSP_0657	-	hypothetical protein
2264	 71.96	0	2397254..2399653	+	799	77464229	-	RSP_0658	-	ATP-dependent helicase
2265	 73.07	+1	2399759..2400445	+	228	77464230	-	RSP_0659	-	putative metallo-phosphoesterase
2266	 72.36	0	2400409..2401128	-	239	77464231	-	RSP_0660	-	hypothetical protein
2267	 70.48	0	2401243..2402133	-	296	77464232	-	RSP_0661	-	methenyltetrahydrofolate cyclohydrolase
2268	 67.30	0	2402130..2402447	-	105	77464233	-	RSP_0662	-	chorismate mutase
2269	 67.74	0	2402522..2404195	-	557	77464234	-	RSP_0663	-	formate--tetrahydrofolate ligase
2270	 66.25	0	2404276..2405241	-	321	77464235	-	RSP_0664	-	hypothetical protein
2271	 65.62	0	2405469..2407370	-	633	77464236	ftsH	RSP_0665	-	membrane protease FtsH catalytic subunit
2272	 74.25	+1	2407449..2408687	-	412	77464237	-	RSP_0666	-	cell cycle protein
2273	 72.73	0	2408687..2409511	-	274	77464238	-	RSP_0667	-	hypothetical protein
2274	 69.58	0	2409516..2410064	-	182	77464239	-	RSP_0668	-	OmpA/MotB family protein
2275	 70.64	0	2410149..2411483	-	444	77464240	tolB	RSP_0669	-	translocation protein TolB
2276	 74.20	+1	2411553..2412800	-	415	77464241	-	RSP_0670	-	hypothetical protein
2277	 68.79	0	2412811..2413281	-	156	77464242	-	RSP_0671	-	ExbD/TolR family protein
2278	 66.09	0	2413285..2413983	-	232	77464243	TolQ	RSP_0672	-	biopolymer transport protein, TolQ
2279	 68.92	0	2414110..2414508	-	132	77464244	-	RSP_0673	-	putative thioesterase
2280	 59.62	-2	2414776..2415087	+	103	77464245	-	RSP_6124	-	hypothetical protein
2281	 74.39	+1	2415483..2416595	+	370	77464246	-	RSP_0674	-	DNA polymerase III subunit delta'
2282	 70.43	0	2416607..2417404	+	265	77464247	-	RSP_0675	-	putative TatD-related deoxyribonuclease
2283	 69.92	0	2417404..2418201	+	265	77464248	-	RSP_0676	-	PhnP-like protein
2284	 67.31	0	2418198..2419136	+	312	77464249	-	RSP_0677	-	malonate transporter MdcF
2285	 74.82	+1	2419121..2421868	-	915	77464250	-	RSP_0678	-	hypothetical protein
2286	 74.34	+1	2422303..2423058	-	251	77464251	-	RSP_6125	-	hypothetical protein
2287	 68.89	0	2423236..2424180	-	314	77464252	hemC	RSP_0679	-	porphobilinogen deaminase
2288	 67.25	0	2424282..2425313	+	343	77464253	hemE	RSP_0680	-	uroporphyrinogen decarboxylase
2289	 72.46	0	2425488..2426039	+	183	77464254	-	RSP_0681	-	hypothetical protein
2290	 68.72	0	2426180..2427055	-	291	77464255	hemF	RSP_0682	-	coproporphyrinogen III oxidase
2291	 69.81	0	2427172..2427585	+	137	77464256	-	RSP_0683	-	hypothetical protein
2292	 67.65	0	2427604..2428413	-	269	77464257	-	RSP_0684	-	oxidoreductase
2293	 72.36	0	2428426..2429427	-	333	77464258	-	RSP_0685	-	16S rRNA m(2)G 1207 methyltransferase
2294	 61.68	-1	2429444..2429764	-	106	77464259	-	RSP_0686	-	ATP-dependent Clp protease adaptor protein clpS
2295	 65.55	0	2429936..2430649	+	237	77464260	-	RSP_0687	-	HAD superfamily hydrolase
2296	 68.79	0	2430748..2432253	+	501	77464261	-	RSP_0688	-	penicillin-binding protein
2297	 63.52	-1	2432360..2432518	-	52	77464262	rdxS	RSP_0689	-	RdxS, cytochrome oxidase maturation protein, cbb3-type
2298	 72.13	0	2432518..2434731	-	737	77464263	rdxI	RSP_0690	-	copper-translocating P-type ATPase, RdxI
2299	 68.85	0	2434735..2435193	-	152	77464264	rdxH	RSP_0691	-	RdxH
2300	 66.81	0	2435195..2436628	-	477	77464265	rdxB	RSP_0692	-	iron-sulfur cluster-binding protein
2301	 65.41	0	2436863..2437735	-	290	77464266	ccoP	RSP_0693	-	Cbb3-type cytochrome c oxidase CcoP subunit
2302	 63.73	-1	2437732..2437935	-	67	77464267	ccoQ	RSP_0694	-	Cbb3-type cytochrome c oxidase CcoQ subunit
2303	 64.19	-1	2437948..2438673	-	241	77464268	ccoO	RSP_0695	-	Cbb3-type cytochrome c oxidase CcoO subunit
2304	 62.75	-1	2438690..2440297	-	535	77464269	ccoN	RSP_0696	-	Cbb3-type cytochrome oxidase CcoN subunit
2305	 69.85	0	2440493..2441341	+	282	77464270	-	RSP_0697	-	universal stress protein
2306	 65.73	0	2441421..2442167	-	248	77464271	fnrL	RSP_0698	-	Crp-Fnr regulatory protein (FnrL)
2307	 68.37	0	2442230..2443582	+	450	77464272	hemZ	RSP_0699	-	coproporphyrinogen III oxidase
2308	 70.10	0	2443593..2444816	-	407	77464273	-	RSP_0700	-	glycosyltransferase
2309	 70.10	0	2444822..2446453	-	543	77464274	-	RSP_0701	-	peptide ABC transporter ATPase
2310	 65.94	0	2446450..2447556	-	368	77464275	-	RSP_0702	-	ABC peptide transporter, inner membrane subunit
2311	 64.65	0	2447558..2448646	-	362	77464276	-	RSP_0703	-	ABC peptide transporter, inner membrane subunit
2312	 65.53	0	2448662..2450599	-	645	77464277	-	RSP_0704	-	ABC peptide transporter, substrate binding protein
2313	 68.38	0	2450768..2451292	-	174	77464278	-	RSP_0705	-	cytochrome cy
2314	 68.11	0	2451344..2452246	+	300	77464279	pheA	RSP_0706	-	prephenate dehydratase
2315	 72.19	0	2452265..2452771	-	168	77464280	-	RSP_0707	-	hypothetical protein
2316	 72.75	0	2452809..2453762	-	317	77464281	-	RSP_0708	-	NUDIX hydrolase
2317	 73.80	+1	2453997..2455889	+	630	77464282	cpdB	RSP_0709	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
2318	 70.67	0	2456212..2457960	+	582	77464283	dnaX	RSP_0710	-	DNA polymerase III subunits gamma and tau
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.