IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2154	 68.35	0	2287395..2288462	+	355	77464119	-	RSP_0550	-	putative D-alanyl-D-alanine carboxypeptidase
2155	 74.01	+1	2288475..2289128	+	217	77464120	-	RSP_0551	-	thymidylate kinase
2156	 71.14	0	2289308..2289955	-	215	77464121	-	RSP_6118	-	hypothetical protein
2157	 66.08	0	2290223..2290564	+	113	77464122	-	RSP_0552	-	multidrug ABC transporter
2158	 71.25	0	2290834..2291859	-	341	77464123	ruvB	RSP_0553	-	Holliday junction DNA helicase B
2159	 70.21	0	2291924..2292826	-	300	77464124	htpx	RSP_0554	-	heat shock protein HtpX
2160	 72.15	0	2292945..2293619	-	224	77464125	ruvA	RSP_0555	-	Holliday junction DNA helicase motor protein
2161	 68.05	0	2293616..2294122	-	168	77464126	ruvC	RSP_0556	-	Holliday junction resolvase
2162	 69.95	0	2294442..2294654	+	70	77464127	-	RSP_0557	-	hypothetical protein
2163	 70.09	0	2295006..2295881	-	291	77464128	-	RSP_0558	-	50S ribosomal protein L11P methyltransferase
2164	 68.44	0	2295945..2296619	-	224	77464129	msrA	RSP_0559	-	peptide methionine sulfoxide reductase
2165	 73.73	+1	2296841..2299033	-	730	77464130	priA	RSP_0560	-	primosome assembly protein PriA
2166	 64.70	0	2299128..2299787	+	219	77464131	-	RSP_0561	-	putative translaldolase
2167	 69.28	0	2299810..2300499	+	229	77464132	-	RSP_0562	-	hypothetical protein
2168	 74.38	+1	2300496..2301416	+	306	77464133	xerC	RSP_0563	-	site-specific tyrosine recombinase XerC
2169	 74.31	+1	2301525..2302244	+	239	77464134	-	RSP_0564	-	hypothetical protein
2170	 63.88	-1	2302340..2303056	+	238	77464135	-	RSP_0565	-	CDP-diacylglycerol-choline O-phosphatidyltransferase
2171	 70.61	0	2303064..2303900	-	278	77464136	-	RSP_0566	-	DMT family permease
2172	 73.87	+1	2303964..2304407	-	147	77464137	-	RSP_0567	-	methylated-DNA-(protein)-cysteine S-methyltransferase
2173	 74.80	+1	2304404..2304649	-	81	77464138	-	RSP_6119	-	hypothetical protein
2174	 66.02	0	2304633..2307587	-	984	77464139	ileS	RSP_0568	-	isoleucyl-tRNA synthetase
2175	 72.82	0	2307782..2308837	-	351	77464140	-	RSP_0569	-	hypothetical protein
2176	 70.65	0	2308938..2310368	-	476	77464141	-	RSP_0570	-	hypothetical protein
2177	 72.53	0	2310595..2311362	+	255	77464142	truA	RSP_0571	-	tRNA pseudouridine synthase A
2178	 72.41	0	2311564..2313651	-	695	77464143	-	RSP_0572	-	putative exonuclease
2179	 67.44	0	2313655..2314044	-	129	77464144	phoB	RSP_0573	-	response regulator receiver protein
2180	 71.07	0	2314046..2314567	-	173	77464145	-	RSP_0574	-	hypothetical protein
2181	 69.19	0	2314578..2316398	-	606	77464146	-	RSP_0575	-	signal transduction protein
2182	 65.68	0	2316462..2318279	-	605	77464147	-	RSP_0576	-	Na+/solute symporter
2183	 62.45	-1	2318295..2318555	-	86	77464148	-	RSP_0577	-	hypothetical protein
2184	 73.09	+1	2318643..2319296	-	217	77464149	-	RSP_0578	-	adenylate kinase
2185	 66.26	0	2319336..2321297	-	653	77464150	-	RSP_0579	-	Acetyl-coenzyme A synthetase
2186	 69.14	0	2321390..2323288	-	632	77464151	-	RSP_0580	-	SulP family sulfate transporter
2187	 74.95	+1	2323361..2323855	+	164	77464152	-	RSP_0581	-	hypothetical protein
2188	 74.01	+1	2324005..2325462	+	485	77464153	-	RSP_0582	-	penicillin binding protein
2189	 68.32	0	2325622..2326044	-	140	77464154	-	RSP_0583	-	hypothetical protein
2190	 65.97	0	2326302..2327882	+	526	77464155	lysK	RSP_0584	-	lysyl-tRNA synthetase
2191	 66.67	0	2328340..2328762	+	140	77464156	osmC	RSP_0585	-	osmotically inducible protein OsmC
2192	 74.21	+1	2329105..2329674	-	189	77464157	nadD	RSP_0586	-	nicotinic acid mononucleotide adenylyltransferase
2193	 64.25	-1	2329855..2331510	+	551	77464158	-	RSP_0587	-	putative ABC transporter ATP-binding protein
2194	 69.72	0	2331507..2331866	+	119	77464159	-	RSP_0588	-	hypothetical protein
2195	 63.73	-1	2332005..2332208	-	67	77464160	-	RSP_0589	-	hypothetical protein
2196	 64.71	0	2332354..2332506	+	50	77464161	-	RSP_6120	-	hypothetical protein
2197	 70.10	0	2332597..2332887	-	96	77464162	-	RSP_0590	-	hypothetical protein
2198	 63.77	-1	2333138..2333344	+	68	77464163	-	RSP_0591	-	cold-shock DNA-binding protein family protein
2199	 75.44	+1	2333438..2334406	+	322	77464164	-	RSP_0592	-	putative lipase/esterase
2200	 66.40	0	2334500..2336005	+	501	77464165	-	RSP_0594	-	putative choline sulfatase
2201	 72.48	0	2336088..2336603	-	171	77464166	-	RSP_0595	-	hypothetical protein
2202	 69.89	0	2336687..2338705	-	672	77464167	-	RSP_0596	-	peptidyl-dipeptidase Dcp
2203	 73.90	+1	2338792..2339841	-	349	77464168	-	RSP_0597	-	molybdopterin biosynthesis protein
2204	 73.93	+1	2339838..2340305	-	155	77464169	-	RSP_0598	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
2205	 72.71	0	2340411..2341601	-	396	77464170	-	RSP_0599	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
2206	 75.24	+1	2341664..2342491	-	275	77464171	-	RSP_0600	-	hypothetical protein
2207	 66.10	0	2342488..2343366	-	292	77464172	rpoH2	RSP_0601	-	RNA polymerase factor sigma-32
2208	 66.13	0	2343421..2343975	+	184	77464173	-	RSP_0602	-	adenosylcobinamide kinase
2209	 72.37	0	2343972..2344550	+	192	77464174	-	RSP_0603	-	hypothetical protein
2210	 67.76	0	2344845..2346215	-	456	77464175	-	RSP_0604	-	hypothetical protein
2211	 63.73	-1	2346456..2346761	+	101	77464176	-	RSP_0605	-	hypothetical protein
2212	 66.03	0	2347274..2347747	+	157	77464177	-	RSP_0606	-	putative redox protein
2213	 65.04	0	2347737..2348597	+	286	77464178	-	RSP_0607	-	RNA polymerase sigma factor SigJ
2214	 67.19	0	2348723..2349103	+	126	77464179	-	RSP_0609	-	hypothetical protein
2215	 59.11	-2	2349051..2349434	-	127	77464180	-	RSP_0608	-	hypothetical protein
2216	 65.18	0	2349479..2350285	-	268	77464181	-	RSP_0610	-	putative 3-oxoacyl-(acyl-carrier-protein) reductase
2217	 61.20	-1	2350328..2350711	+	127	77464182	-	RSP_0611	-	ArsR family transcriptional regulator
2218	 60.95	-1	2350985..2351614	-	209	77464183	-	RSP_0612	-	RhtB family transporter
2219	 54.58	-2	2351902..2352414	+	170	77464184	-	RSP_0613	-	hypothetical protein
2220	 65.66	0	2352461..2352757	+	98	77464185	-	RSP_0614	-	hypothetical protein
2221	 65.90	0	2352823..2353740	-	305	77464186	-	RSP_0615	-	putative oxidoreductase
2222	 70.70	0	2353834..2354577	+	247	77464187	-	RSP_0616	-	AraC family transcriptional regulator
2223	 65.59	0	2354634..2355188	+	184	77464188	-	RSP_0617	-	hypothetical protein
2224	 73.77	+1	2355164..2355346	-	60	77464189	-	RSP_0618	-	hypothetical protein
2225	 58.91	-2	2355658..2356044	+	128	77464190	-	RSP_0619	-	hypothetical protein
2226	 68.09	0	2356138..2356488	+	116	77464191	-	RSP_0620	-	hypothetical protein
2227	 68.08	0	2356523..2361670	+	1715	77464192	-	RSP_0621	-	DNA helicase
2228	 72.68	0	2362113..2362295	-	60	77464193	-	RSP_0623	-	hypothetical protein
2229	 73.47	+1	2362292..2363335	-	347	77464194	-	RSP_0624	-	hypothetical protein
2230	 72.37	0	2363332..2363910	-	192	77464195	-	RSP_0625	-	putative Maf-like protein
2231	 56.16	-2	2363911..2364129	-	72	77464196	infA	RSP_0626	-	translation initiation factor IF-1
2232	 70.89	0	2364304..2365179	-	291	77464197	-	RSP_0627	-	putative amidohydrolase
2233	 69.90	0	2365199..2365786	-	195	77464198	-	RSP_0628	-	hypothetical protein
2234	 66.67	0	2365783..2366184	-	133	77464199	-	RSP_0629	-	hypothetical protein
2235	 65.85	0	2366171..2366662	-	163	77464200	-	RSP_0630	-	hypothetical protein
2236	 66.04	0	2366659..2367135	-	158	77464201	-	RSP_0631	-	hypothetical protein
2237	 72.80	0	2367139..2368443	-	434	77464202	hisD	RSP_0632	-	histidinol dehydrogenase
2238	 72.71	0	2368665..2369144	-	159	77464203	-	RSP_6122	-	hypothetical protein
2239	 70.06	0	2369144..2370412	-	422	77464204	-	RSP_0633	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2240	 66.82	0	2371214..2372521	-	435	77464205	-	RSP_0634	-	TRAP dicarboxylate family transporter DctM subunit
2241	 60.69	-1	2372531..2373049	-	172	77464206	-	RSP_0635	-	TRAP dicarboxylate family transporter DctQ subunit
2242	 66.22	0	2373108..2374232	-	374	77464207	-	RSP_0636	-	TRAP dicarboxylate family transporter DctP subunit
2243	 74.38	+1	2374319..2375044	-	241	77464208	-	RSP_0637	-	hypothetical protein
2244	 72.93	0	2375041..2376333	-	430	77464209	-	RSP_0638	-	putative FAD dependent oxidoreductase protein
2245	 68.34	0	2376335..2378011	-	558	77464210	-	RSP_0639	-	putative N-methylhydantoinase B
2246	 70.58	0	2378015..2380033	-	672	77464211	-	RSP_0640	-	putative N-methylhydantoinase A
2247	 68.40	0	2380273..2380908	+	211	77464212	-	RSP_0641	-	XRE family transcriptional regulator
2248	 71.64	0	2380915..2381859	+	314	77464213	-	RSP_0642	-	RhaT family protein
2249	 70.88	0	2382164..2384014	+	616	77464214	-	RSP_0643	-	periplasmic sensor signal transduction histidine kinase
2250	 73.64	+1	2384018..2384734	-	238	77464215	-	RSP_0644	-	ABC transporter, inner membrane subunit
2251	 76.21	+1	2384731..2385411	-	226	77464216	-	RSP_0645	-	ABC transporter, ATPase subunit
2252	 69.02	0	2385411..2386346	-	311	77464217	-	RSP_0646	-	ABC transporter, substrate-binding protein
2253	 72.76	0	2386343..2387146	-	267	77464218	thiD	RSP_0647	-	phosphomethylpyrimidine kinase
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.