IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2118	 70.41	0	2250807..2251820	-	337	77464083	-	RSP_0514	-	dTDP-glucose 4,6-dehydratase protein
2119	 71.31	0	2251882..2252958	-	358	77464084	-	RSP_0515	-	hypothetical protein
2120	 71.52	0	2252955..2254046	-	363	77464085	-	RSP_0516	-	hypothetical protein
2121	 70.54	0	2254046..2255155	-	369	77464086	-	RSP_0517	-	hypothetical protein
2122	 73.93	+1	2255157..2256257	-	366	77464087	-	RSP_0518	-	putative glycosyltransferase protein
2123	 70.68	0	2256254..2258272	-	672	77464088	-	RSP_0519	-	NAD-dependent epimerase/dehydratase
2124	 69.56	0	2258269..2259375	-	368	77464089	-	RSP_0520	-	NAD-dependent dehydratase/epimerase
2125	 71.67	0	2259613..2260611	+	332	77464090	-	RSP_0521	-	putative Zn-containing dehydrogenase
2126	 74.27	+1	2260602..2261627	+	341	77464091	-	RSP_0522	-	putative oxidoreductase
2127	 67.17	0	2261634..2262422	+	262	77464092	-	RSP_0523	-	hypothetical protein
2128	 68.28	0	2262525..2263328	-	267	77464093	-	RSP_0524	-	hypothetical protein
2129	 70.15	0	2263490..2264149	+	219	77464094	-	RSP_0525	-	hypothetical protein
2130	 70.14	0	2264159..2264590	+	143	77464095	-	RSP_0526	-	hypothetical protein
2131	 72.34	0	2264623..2265927	-	434	77464096	rpoN	RSP_0527	-	sigma-54, RpoN
2132	 68.50	0	2266028..2266354	-	108	77464097	nifW	RSP_0528	-	nitrogenase stabilizing/protective protein
2133	 74.74	+1	2266463..2267539	-	358	77464098	nifV	RSP_0529	-	homocitrate synthase
2134	 71.99	0	2267539..2268702	-	387	77464099	nifS	RSP_0530	-	cysteine desulfurase
2135	 75.98	+1	2268702..2269442	-	246	77464100	nifU	RSP_0531	-	nitrogen fixation protein
2136	 66.04	0	2269452..2269772	-	106	77464101	-	RSP_0532	-	hypothetical protein
2137	 72.22	0	2270336..2270875	-	179	77464102	nifQ	RSP_0533	-	putative nitrogen fixation protein nifQ
2138	 61.72	-1	2270856..2271158	-	100	77464103	-	RSP_0534	-	putative dimeric ferredoxin (FdIII)
2139	 67.73	0	2271272..2271742	-	156	77464104	-	RSP_0535	-	hypothetical protein
2140	 69.18	0	2271739..2272215	-	158	77464105	nifX	RSP_0536	-	putative nitrogenase molybdenum-iron protein NifX
2141	 70.54	0	2272187..2273554	-	455	77464106	nifN	RSP_0537	-	nitrogenase molybdenum-iron protein beta chain, nifN
2142	 69.19	0	2273554..2275017	-	487	77464107	nifE	RSP_0538	-	nifE, nitrogenase molybdenum-cofactor synthesis protein
2143	 64.30	-1	2275264..2276784	-	506	77464108	nifK	RSP_0539	-	nitrogenase molybdenum-iron protein beta chain
2144	 62.69	-1	2276885..2278366	-	493	77464109	nifD	RSP_0540	-	nitrogenase iron-molybdenum protein, alpha chain
2145	 63.93	-1	2278428..2279303	-	291	77464110	nifH	RSP_0541	-	nitrogenase reductase
2146	 73.04	+1	2279747..2280577	-	276	77464111	-	RSP_0542	-	hypothetical protein
2147	 66.67	0	2280582..2280797	-	71	77464112	fixU	RSP_0543	-	hypothetical protein
2148	 62.11	-1	2280794..2281078	-	94	77464113	nifZ	RSP_0544	-	nitrogen fixation protein NifZ
2149	 76.43	+1	2281065..2281832	-	255	77464114	-	RSP_0545	-	hypothetical protein
2150	 69.04	0	2282039..2283514	-	491	77464115	nifB	RSP_0546	-	NifB family--FeMo cofactor biosynthesis protein
2151	 71.02	0	2283761..2285506	-	581	77464116	nifA	RSP_0547	-	NifA subfamily transcriptional regulator
2152	 68.43	0	2285786..2286181	-	131	77464117	-	RSP_0548	-	hypothetical protein
2153	 73.95	+1	2286494..2287276	+	260	77464118	-	RSP_0549	-	hypothetical protein
2154	 68.35	0	2287395..2288462	+	355	77464119	-	RSP_0550	-	putative D-alanyl-D-alanine carboxypeptidase
2155	 74.01	+1	2288475..2289128	+	217	77464120	-	RSP_0551	-	thymidylate kinase
2156	 71.14	0	2289308..2289955	-	215	77464121	-	RSP_6118	-	hypothetical protein
2157	 66.08	0	2290223..2290564	+	113	77464122	-	RSP_0552	-	multidrug ABC transporter
2158	 71.25	0	2290834..2291859	-	341	77464123	ruvB	RSP_0553	-	Holliday junction DNA helicase B
2159	 70.21	0	2291924..2292826	-	300	77464124	htpx	RSP_0554	-	heat shock protein HtpX
2160	 72.15	0	2292945..2293619	-	224	77464125	ruvA	RSP_0555	-	Holliday junction DNA helicase motor protein
2161	 68.05	0	2293616..2294122	-	168	77464126	ruvC	RSP_0556	-	Holliday junction resolvase
2162	 69.95	0	2294442..2294654	+	70	77464127	-	RSP_0557	-	hypothetical protein
2163	 70.09	0	2295006..2295881	-	291	77464128	-	RSP_0558	-	50S ribosomal protein L11P methyltransferase
2164	 68.44	0	2295945..2296619	-	224	77464129	msrA	RSP_0559	-	peptide methionine sulfoxide reductase
2165	 73.73	+1	2296841..2299033	-	730	77464130	priA	RSP_0560	-	primosome assembly protein PriA
2166	 64.70	0	2299128..2299787	+	219	77464131	-	RSP_0561	-	putative translaldolase
2167	 69.28	0	2299810..2300499	+	229	77464132	-	RSP_0562	-	hypothetical protein
2168	 74.38	+1	2300496..2301416	+	306	77464133	xerC	RSP_0563	-	site-specific tyrosine recombinase XerC
2169	 74.31	+1	2301525..2302244	+	239	77464134	-	RSP_0564	-	hypothetical protein
2170	 63.88	-1	2302340..2303056	+	238	77464135	-	RSP_0565	-	CDP-diacylglycerol-choline O-phosphatidyltransferase
2171	 70.61	0	2303064..2303900	-	278	77464136	-	RSP_0566	-	DMT family permease
2172	 73.87	+1	2303964..2304407	-	147	77464137	-	RSP_0567	-	methylated-DNA-(protein)-cysteine S-methyltransferase
2173	 74.80	+1	2304404..2304649	-	81	77464138	-	RSP_6119	-	hypothetical protein
2174	 66.02	0	2304633..2307587	-	984	77464139	ileS	RSP_0568	-	isoleucyl-tRNA synthetase
2175	 72.82	0	2307782..2308837	-	351	77464140	-	RSP_0569	-	hypothetical protein
2176	 70.65	0	2308938..2310368	-	476	77464141	-	RSP_0570	-	hypothetical protein
2177	 72.53	0	2310595..2311362	+	255	77464142	truA	RSP_0571	-	tRNA pseudouridine synthase A
2178	 72.41	0	2311564..2313651	-	695	77464143	-	RSP_0572	-	putative exonuclease
2179	 67.44	0	2313655..2314044	-	129	77464144	phoB	RSP_0573	-	response regulator receiver protein
2180	 71.07	0	2314046..2314567	-	173	77464145	-	RSP_0574	-	hypothetical protein
2181	 69.19	0	2314578..2316398	-	606	77464146	-	RSP_0575	-	signal transduction protein
2182	 65.68	0	2316462..2318279	-	605	77464147	-	RSP_0576	-	Na+/solute symporter
2183	 62.45	-1	2318295..2318555	-	86	77464148	-	RSP_0577	-	hypothetical protein
2184	 73.09	+1	2318643..2319296	-	217	77464149	-	RSP_0578	-	adenylate kinase
2185	 66.26	0	2319336..2321297	-	653	77464150	-	RSP_0579	-	Acetyl-coenzyme A synthetase
2186	 69.14	0	2321390..2323288	-	632	77464151	-	RSP_0580	-	SulP family sulfate transporter
2187	 74.95	+1	2323361..2323855	+	164	77464152	-	RSP_0581	-	hypothetical protein
2188	 74.01	+1	2324005..2325462	+	485	77464153	-	RSP_0582	-	penicillin binding protein
2189	 68.32	0	2325622..2326044	-	140	77464154	-	RSP_0583	-	hypothetical protein
2190	 65.97	0	2326302..2327882	+	526	77464155	lysK	RSP_0584	-	lysyl-tRNA synthetase
2191	 66.67	0	2328340..2328762	+	140	77464156	osmC	RSP_0585	-	osmotically inducible protein OsmC
2192	 74.21	+1	2329105..2329674	-	189	77464157	nadD	RSP_0586	-	nicotinic acid mononucleotide adenylyltransferase
2193	 64.25	-1	2329855..2331510	+	551	77464158	-	RSP_0587	-	putative ABC transporter ATP-binding protein
2194	 69.72	0	2331507..2331866	+	119	77464159	-	RSP_0588	-	hypothetical protein
2195	 63.73	-1	2332005..2332208	-	67	77464160	-	RSP_0589	-	hypothetical protein
2196	 64.71	0	2332354..2332506	+	50	77464161	-	RSP_6120	-	hypothetical protein
2197	 70.10	0	2332597..2332887	-	96	77464162	-	RSP_0590	-	hypothetical protein
2198	 63.77	-1	2333138..2333344	+	68	77464163	-	RSP_0591	-	cold-shock DNA-binding protein family protein
2199	 75.44	+1	2333438..2334406	+	322	77464164	-	RSP_0592	-	putative lipase/esterase
2200	 66.40	0	2334500..2336005	+	501	77464165	-	RSP_0594	-	putative choline sulfatase
2201	 72.48	0	2336088..2336603	-	171	77464166	-	RSP_0595	-	hypothetical protein
2202	 69.89	0	2336687..2338705	-	672	77464167	-	RSP_0596	-	peptidyl-dipeptidase Dcp
2203	 73.90	+1	2338792..2339841	-	349	77464168	-	RSP_0597	-	molybdopterin biosynthesis protein
2204	 73.93	+1	2339838..2340305	-	155	77464169	-	RSP_0598	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
2205	 72.71	0	2340411..2341601	-	396	77464170	-	RSP_0599	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
2206	 75.24	+1	2341664..2342491	-	275	77464171	-	RSP_0600	-	hypothetical protein
2207	 66.10	0	2342488..2343366	-	292	77464172	rpoH2	RSP_0601	-	RNA polymerase factor sigma-32
2208	 66.13	0	2343421..2343975	+	184	77464173	-	RSP_0602	-	adenosylcobinamide kinase
2209	 72.37	0	2343972..2344550	+	192	77464174	-	RSP_0603	-	hypothetical protein
2210	 67.76	0	2344845..2346215	-	456	77464175	-	RSP_0604	-	hypothetical protein
2211	 63.73	-1	2346456..2346761	+	101	77464176	-	RSP_0605	-	hypothetical protein
2212	 66.03	0	2347274..2347747	+	157	77464177	-	RSP_0606	-	putative redox protein
2213	 65.04	0	2347737..2348597	+	286	77464178	-	RSP_0607	-	RNA polymerase sigma factor SigJ
2214	 67.19	0	2348723..2349103	+	126	77464179	-	RSP_0609	-	hypothetical protein
2215	 59.11	-2	2349051..2349434	-	127	77464180	-	RSP_0608	-	hypothetical protein
2216	 65.18	0	2349479..2350285	-	268	77464181	-	RSP_0610	-	putative 3-oxoacyl-(acyl-carrier-protein) reductase
2217	 61.20	-1	2350328..2350711	+	127	77464182	-	RSP_0611	-	ArsR family transcriptional regulator
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.