IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2065	 72.96	+1	2196758..2197711	-	317	77464030	-	RSP_0461	-	multidrug/cation efflux pump
2066	 70.20	0	2197833..2198087	+	84	77464031	-	RSP_0462	-	hypothetical protein
2067	 68.13	0	2198150..2199037	-	295	77464032	-	RSP_0463	-	cation efflux transporter
2068	 70.90	0	2199168..2200064	-	298	77464033	-	RSP_0464	-	putative protease
2069	 68.30	0	2200069..2201049	-	326	77464034	-	RSP_0465	-	putative protease
2070	 71.24	0	2201049..2201573	-	174	77464035	-	RSP_0466	-	hypothetical protein
2071	 70.48	0	2201698..2203191	+	497	77464036	ubiD	RSP_0467	-	3-octaprenyl-4hydroxybenzoate decarboxylase
2072	 74.23	+1	2203188..2203742	+	184	77464037	-	RSP_0468	-	putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2073	 69.29	0	2203870..2205090	-	406	77464038	-	RSP_0469	-	hypothetical protein
2074	 74.90	+1	2205174..2206691	-	505	77464039	-	RSP_0470	-	hypothetical protein
2075	 66.67	0	2206851..2207183	+	110	77464040	-	RSP_6116	-	hypothetical protein
2076	 70.12	0	2207288..2208010	+	240	77464041	-	RSP_0472	-	hypothetical protein
2077	 70.66	0	2208007..2209557	+	516	77464042	-	RSP_0473	-	phospholipase-D family protein
2078	 66.67	0	2209777..2210226	+	149	77464043	cycP	RSP_0474	-	cytochrome c'
2079	 70.67	0	2210230..2210829	+	199	77464044	-	RSP_0475	-	cytochrome b
2080	 68.53	0	2210875..2211519	-	214	77464045	-	RSP_0476	-	L-fuculose-phosphate aldolase
2081	 73.68	+1	2211874..2213370	+	498	77464046	-	RSP_0477	-	hypothetical protein
2082	 71.68	0	2213501..2214538	-	345	77464047	-	RSP_0478	-	putative lysyl-tRNA synthetase
2083	 63.49	-1	2214640..2215206	+	188	77464048	-	RSP_0479	-	elongation factor P
2084	 71.05	0	2215294..2216661	-	455	77464049	uxuB	RSP_0480	-	D-mannonate oxidoreductase
2085	 70.25	0	2216678..2217403	-	241	77464050	-	RSP_0481	-	2-deoxy-D-gluconate 3-dehydrogenase
2086	 67.64	0	2217400..2218224	-	274	77464051	kduI	RSP_0482	-	5-keto-4-deoxyuronate isomerase
2087	 67.33	0	2218366..2218668	-	100	77464052	-	RSP_0483	-	hypothetical protein
2088	 67.21	0	2218676..2219956	-	426	77464053	-	RSP_0484	-	TRAP dicarboxylate family transporter DctM subunit
2089	 67.77	0	2219959..2220504	-	181	77464054	-	RSP_0485	-	TRAP dicarboxylate family transporter DctQ subunit
2090	 63.09	-1	2220567..2221544	-	325	77464055	-	RSP_0487	-	TRAP dicarboxylate family transporter DctP subunit
2091	 69.30	0	2221570..2222976	-	468	77464056	uxaC	RSP_0488	-	glucuronate isomerase
2092	 67.50	0	2223080..2223796	+	238	77464057	-	RSP_0489	-	GntR family transcriptional regulator
2093	 73.31	+1	2223935..2224687	+	250	77464058	-	RSP_0490	-	2-keto-3-deoxygluconate kinase
2094	 71.92	0	2225114..2226445	+	443	77464059	hupT	RSP_0491	-	hydrogen uptake histidine-kinase
2095	 71.00	0	2226442..2227434	+	330	77464060	hupU	RSP_0492	-	hydrogenase small subunit
2096	 73.67	+1	2227431..2228858	+	475	77464061	hupV	RSP_0493	-	hydrogenase large subunit
2097	 75.41	+1	2229068..2231344	+	758	77464062	hypF	RSP_0494	-	hydrogenase maturation factor F
2098	 65.77	0	2231581..2232690	+	369	77464063	hupS	RSP_0495	-	hydrogenase protein small subunit
2099	 65.44	0	2232694..2234484	+	596	77464064	hupL	RSP_0496	-	hydrogenase protein large subunit
2100	 74.48	+1	2234496..2235071	+	191	77464065	-	RSP_0497	-	HupE/UreJ accessory protein
2101	 62.96	-1	2235213..2235860	+	215	77464066	hupC	RSP_0498	-	Ni, Fe hydrogenase I cytochrome b subunit
2102	 71.34	0	2236151..2236771	+	206	77464067	hupD	RSP_0499	-	HyaD peptidase
2103	 74.21	+1	2236771..2237088	+	105	77464068	-	RSP_0500	-	putative HupF/HypC hydrogenase protein
2104	 71.58	0	2237085..2237471	+	128	77464069	hupG	RSP_0501	-	HupG hydrogenase expression/formation protein
2105	 69.72	0	2237483..2238301	+	272	77464070	hupH	RSP_0502	-	HupH hydrogenase expression/formation protein
2106	 68.38	0	2238298..2239056	+	252	77464071	hupJ	RSP_0503	-	hypothetical protein
2107	 74.78	+1	2239053..2239865	+	270	77464072	hupK	RSP_0504	-	HupK
2108	 68.13	0	2239858..2240199	+	113	77464073	hypA	RSP_0505	-	hydrogenase expression/synthesis, HypA family
2109	 66.09	0	2240199..2241068	+	289	77464074	hypB	RSP_0506	-	NI2+-binding GTPase protein HypB
2110	 70.05	0	2241068..2242543	+	491	77464075	-	RSP_0507	-	HupR response regulator
2111	 73.54	+1	2242545..2242835	+	96	77464076	hypC	RSP_0508	-	hydrogenase expression/formation protein HypC
2112	 69.65	0	2242832..2243971	+	379	77464077	hypD	RSP_0509	-	hydrogenase isoenzyme formation protein HypD
2113	 73.61	+1	2244022..2245044	+	340	77464078	hypE	RSP_0510	-	hydrogenase expression/formation protein HypE
2114	 73.99	+1	2245112..2245507	+	131	77464079	-	RSP_6117	-	hypothetical protein
2115	 73.61	+1	2245560..2246135	+	191	77464080	-	RSP_0511	-	two component LuxR family transcriptional regulator
2116	 72.20	0	2246349..2249186	+	945	77464081	-	RSP_0512	-	PAS/PAC sensor hybrid histidine kinase
2117	 69.19	0	2249199..2250626	-	475	77464082	-	RSP_0513	-	hypothetical protein
2118	 70.41	0	2250807..2251820	-	337	77464083	-	RSP_0514	-	dTDP-glucose 4,6-dehydratase protein
2119	 71.31	0	2251882..2252958	-	358	77464084	-	RSP_0515	-	hypothetical protein
2120	 71.52	0	2252955..2254046	-	363	77464085	-	RSP_0516	-	hypothetical protein
2121	 70.54	0	2254046..2255155	-	369	77464086	-	RSP_0517	-	hypothetical protein
2122	 73.93	+1	2255157..2256257	-	366	77464087	-	RSP_0518	-	putative glycosyltransferase protein
2123	 70.68	0	2256254..2258272	-	672	77464088	-	RSP_0519	-	NAD-dependent epimerase/dehydratase
2124	 69.56	0	2258269..2259375	-	368	77464089	-	RSP_0520	-	NAD-dependent dehydratase/epimerase
2125	 71.67	0	2259613..2260611	+	332	77464090	-	RSP_0521	-	putative Zn-containing dehydrogenase
2126	 74.27	+1	2260602..2261627	+	341	77464091	-	RSP_0522	-	putative oxidoreductase
2127	 67.17	0	2261634..2262422	+	262	77464092	-	RSP_0523	-	hypothetical protein
2128	 68.28	0	2262525..2263328	-	267	77464093	-	RSP_0524	-	hypothetical protein
2129	 70.15	0	2263490..2264149	+	219	77464094	-	RSP_0525	-	hypothetical protein
2130	 70.14	0	2264159..2264590	+	143	77464095	-	RSP_0526	-	hypothetical protein
2131	 72.34	0	2264623..2265927	-	434	77464096	rpoN	RSP_0527	-	sigma-54, RpoN
2132	 68.50	0	2266028..2266354	-	108	77464097	nifW	RSP_0528	-	nitrogenase stabilizing/protective protein
2133	 74.74	+1	2266463..2267539	-	358	77464098	nifV	RSP_0529	-	homocitrate synthase
2134	 71.99	0	2267539..2268702	-	387	77464099	nifS	RSP_0530	-	cysteine desulfurase
2135	 75.98	+1	2268702..2269442	-	246	77464100	nifU	RSP_0531	-	nitrogen fixation protein
2136	 66.04	0	2269452..2269772	-	106	77464101	-	RSP_0532	-	hypothetical protein
2137	 72.22	0	2270336..2270875	-	179	77464102	nifQ	RSP_0533	-	putative nitrogen fixation protein nifQ
2138	 61.72	-1	2270856..2271158	-	100	77464103	-	RSP_0534	-	putative dimeric ferredoxin (FdIII)
2139	 67.73	0	2271272..2271742	-	156	77464104	-	RSP_0535	-	hypothetical protein
2140	 69.18	0	2271739..2272215	-	158	77464105	nifX	RSP_0536	-	putative nitrogenase molybdenum-iron protein NifX
2141	 70.54	0	2272187..2273554	-	455	77464106	nifN	RSP_0537	-	nitrogenase molybdenum-iron protein beta chain, nifN
2142	 69.19	0	2273554..2275017	-	487	77464107	nifE	RSP_0538	-	nifE, nitrogenase molybdenum-cofactor synthesis protein
2143	 64.30	-1	2275264..2276784	-	506	77464108	nifK	RSP_0539	-	nitrogenase molybdenum-iron protein beta chain
2144	 62.69	-1	2276885..2278366	-	493	77464109	nifD	RSP_0540	-	nitrogenase iron-molybdenum protein, alpha chain
2145	 63.93	-1	2278428..2279303	-	291	77464110	nifH	RSP_0541	-	nitrogenase reductase
2146	 73.04	+1	2279747..2280577	-	276	77464111	-	RSP_0542	-	hypothetical protein
2147	 66.67	0	2280582..2280797	-	71	77464112	fixU	RSP_0543	-	hypothetical protein
2148	 62.11	-1	2280794..2281078	-	94	77464113	nifZ	RSP_0544	-	nitrogen fixation protein NifZ
2149	 76.43	+1	2281065..2281832	-	255	77464114	-	RSP_0545	-	hypothetical protein
2150	 69.04	0	2282039..2283514	-	491	77464115	nifB	RSP_0546	-	NifB family--FeMo cofactor biosynthesis protein
2151	 71.02	0	2283761..2285506	-	581	77464116	nifA	RSP_0547	-	NifA subfamily transcriptional regulator
2152	 68.43	0	2285786..2286181	-	131	77464117	-	RSP_0548	-	hypothetical protein
2153	 73.95	+1	2286494..2287276	+	260	77464118	-	RSP_0549	-	hypothetical protein
2154	 68.35	0	2287395..2288462	+	355	77464119	-	RSP_0550	-	putative D-alanyl-D-alanine carboxypeptidase
2155	 74.01	+1	2288475..2289128	+	217	77464120	-	RSP_0551	-	thymidylate kinase
2156	 71.14	0	2289308..2289955	-	215	77464121	-	RSP_6118	-	hypothetical protein
2157	 66.08	0	2290223..2290564	+	113	77464122	-	RSP_0552	-	multidrug ABC transporter
2158	 71.25	0	2290834..2291859	-	341	77464123	ruvB	RSP_0553	-	Holliday junction DNA helicase B
2159	 70.21	0	2291924..2292826	-	300	77464124	htpx	RSP_0554	-	heat shock protein HtpX
2160	 72.15	0	2292945..2293619	-	224	77464125	ruvA	RSP_0555	-	Holliday junction DNA helicase motor protein
2161	 68.05	0	2293616..2294122	-	168	77464126	ruvC	RSP_0556	-	Holliday junction resolvase
2162	 69.95	0	2294442..2294654	+	70	77464127	-	RSP_0557	-	hypothetical protein
2163	 70.09	0	2295006..2295881	-	291	77464128	-	RSP_0558	-	50S ribosomal protein L11P methyltransferase
2164	 68.44	0	2295945..2296619	-	224	77464129	msrA	RSP_0559	-	peptide methionine sulfoxide reductase
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.