IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2002	 64.97	0	2125036..2127042	-	668	77463967	rpoD	RSP_0395	-	RNA polymerase sigma factor RpoD
2003	 71.01	0	2127147..2129078	-	643	77463968	dnaG	RSP_0397	-	DNA primase
2004	 67.16	0	2129201..2130628	-	475	77463969	-	RSP_0398	-	dehydrogenase
2005	 66.96	0	2130992..2132692	+	566	77463970	-	RSP_0399	-	hypothetical protein
2006	 68.28	0	2132689..2133246	+	185	77463971	-	RSP_0400	-	hypothetical protein
2007	 64.80	0	2133250..2133786	+	178	77463972	-	RSP_0401	-	hypothetical protein
2008	 69.54	0	2133851..2134441	-	196	77463973	-	RSP_0402	-	TetR family transcriptional regulator
2009	 70.40	0	2134939..2136225	+	428	77463974	-	RSP_0403	-	homoserine dehydrogenase
2010	 69.46	0	2136288..2137253	+	321	77463975	glpX	RSP_0404	-	fructose 1,6-bisphosphatase II
2011	 75.06	+1	2137250..2139001	+	583	77463976	-	RSP_0405	-	single-stranded DNA-specific exonuclease
2012	 70.69	0	2139213..2140256	-	347	77463977	-	RSP_0406	-	periplasmic sensor diguanylate cyclase (GGDEF)
2013	 68.07	0	2140469..2141464	-	331	77463978	-	RSP_0407	-	D-lactate dehydrogenase
2014	 73.91	+1	2141667..2142605	+	312	77463979	-	RSP_0408	-	hypothetical protein
2015	 73.61	+1	2142602..2143480	+	292	77463980	-	RSP_0409	-	hypothetical protein
2016	 71.03	0	2143501..2144508	-	335	77463981	-	RSP_0410	-	sensor diguanylate cyclase (GGDEF)
2017	 69.22	0	2144508..2145095	-	195	77463982	-	RSP_6114	-	hypothetical protein
2018	 73.81	+1	2145159..2146880	-	573	77463983	-	RSP_0411	-	hypothetical protein
2019	 71.86	0	2147002..2147694	-	230	77463984	-	RSP_0412	-	putative phosphatase
2020	 70.97	0	2147750..2148028	-	92	77463985	-	RSP_6115	-	hypothetical protein
2021	 73.59	+1	2148157..2149542	+	461	77463986	-	RSP_0413	-	response regulator receiver modulated diguanylate cyclase
2022	 73.30	+1	2149704..2150231	-	175	77463987	-	RSP_0414	-	hypothetical protein
2023	 72.50	0	2150233..2150592	-	119	77463988	-	RSP_6227	-	hypothetical protein
2024	 72.73	0	2150594..2151187	-	197	77463989	-	RSP_0415	-	RNA polymerase sigma factor
2025	 73.52	+1	2151264..2151920	-	218	77463990	-	RSP_0416	-	calcium-binding EF-hand domain-containing protein
2026	 67.15	0	2152121..2152531	+	136	77463991	-	RSP_0418	-	hypothetical protein
2027	 73.16	+1	2152500..2153177	+	225	77463992	-	RSP_0419	-	hypothetical protein
2028	 72.80	0	2153246..2153620	-	124	77463993	-	RSP_0420	-	hypothetical protein
2029	 75.25	+1	2153636..2154136	-	166	77463994	-	RSP_0421	-	hypothetical protein
2030	 73.83	+1	2154124..2154570	-	148	77463995	-	RSP_0422	-	hypothetical protein
2031	 69.64	0	2154649..2155689	-	346	77463996	-	RSP_0423	-	aldo/keto reductase
2032	 72.58	0	2155955..2156563	+	202	77463997	-	RSP_0424	-	hypothetical protein
2033	 66.61	0	2156707..2158425	+	572	77463998	metG	RSP_0425	-	methionyl-tRNA synthetase
2034	 69.79	0	2158701..2161199	-	832	77463999	-	RSP_0426	-	Na+/H+ antiporter
2035	 62.42	-1	2161273..2161602	-	109	77464000	-	RSP_0427	-	hypothetical protein
2036	 72.79	0	2161946..2163268	-	440	77464001	-	RSP_0428	-	hypothetical protein
2037	 69.14	0	2163545..2165401	+	618	77464002	-	RSP_0429	-	multidrug ABC transporter ATP-binding protein
2038	 67.57	0	2165424..2165645	-	73	77464003	-	RSP_6228	-	hypothetical protein
2039	 74.47	+1	2165851..2166786	+	311	77464004	cobD	RSP_0430	-	adenosylcobinamide-phosphate synthase
2040	 66.99	0	2167014..2168234	-	406	77464005	-	RSP_0431	-	putative selenocysteine lyase
2041	 68.91	0	2168244..2168822	-	192	77464006	-	RSP_0432	-	hypothetical protein
2042	 67.08	0	2168819..2169298	-	159	77464007	-	RSP_0433	-	hypothetical protein
2043	 65.09	0	2170582..2171340	-	252	77464008	SufC	RSP_0437	-	SUF C, ATPase
2044	 65.06	0	2171350..2171661	-	103	77464009	-	RSP_0439	-	hypothetical protein
2045	 63.49	-1	2171696..2173237	-	513	77464010	sufB	RSP_0440	-	cysteine desulfurase activator complex subunit SufB
2046	 72.11	0	2173313..2174359	-	348	77464011	-	RSP_0442	-	putative aminotransferase
2047	 63.46	-1	2174442..2174909	-	155	77464012	-	RSP_0443	-	BadM/Rrf2 family transcriptional regulator
2048	 64.70	0	2175063..2175722	+	219	77464013	-	RSP_0444	-	hypothetical protein
2049	 69.74	0	2175719..2176303	+	194	77464014	-	RSP_0445	-	hypothetical protein
2050	 64.69	0	2176388..2177602	+	404	77464015	-	RSP_0446	-	isocitrate dehydrogenase
2051	 66.67	0	2177913..2178515	+	200	77464016	-	RSP_0447	-	hypothetical protein
2052	 67.76	0	2178615..2180435	+	606	77464017	-	RSP_0448	-	EF-Tu; elongation factor Tu
2053	 70.19	0	2180481..2181275	-	264	77464018	-	RSP_0449	-	putative glutamine amidotransferase
2054	 70.10	0	2181431..2181721	-	96	77464019	-	RSP_0450	-	hypothetical protein
2055	 68.82	0	2181723..2184374	-	883	77464020	alaS	RSP_0451	-	alanyl-tRNA synthetase
2056	 63.69	-1	2184461..2185534	-	357	77464021	recA	RSP_0452	-	recombinase A
2057	 63.79	-1	2185729..2186319	+	196	77464022	-	RSP_0453	-	hypothetical protein
2058	 68.14	0	2186323..2188623	-	766	77464023	-	RSP_0454	-	multisensor hybrid histidine kinase
2059	 74.83	+1	2188723..2189886	-	387	77464024	-	RSP_0455	-	NOL1/NOP2/sun family protein
2060	 67.18	0	2189977..2190756	+	259	77464025	glpR	RSP_0457	-	glycerol-3-phosphate regulon repressor
2061	 71.64	0	2190753..2191436	-	227	77464026	-	RSP_0456	-	hypothetical protein
2062	 70.50	0	2191438..2191854	-	138	77464027	-	RSP_0458	-	hypothetical protein
2063	 64.82	0	2192148..2193230	+	360	77464028	-	RSP_0459	-	hypothetical protein
2064	 69.58	0	2193574..2196765	-	1063	77464029	-	RSP_0460	-	AcrB/AcrD/AcrF family cation/multidrug efflux pump
2065	 72.96	+1	2196758..2197711	-	317	77464030	-	RSP_0461	-	multidrug/cation efflux pump
2066	 70.20	0	2197833..2198087	+	84	77464031	-	RSP_0462	-	hypothetical protein
2067	 68.13	0	2198150..2199037	-	295	77464032	-	RSP_0463	-	cation efflux transporter
2068	 70.90	0	2199168..2200064	-	298	77464033	-	RSP_0464	-	putative protease
2069	 68.30	0	2200069..2201049	-	326	77464034	-	RSP_0465	-	putative protease
2070	 71.24	0	2201049..2201573	-	174	77464035	-	RSP_0466	-	hypothetical protein
2071	 70.48	0	2201698..2203191	+	497	77464036	ubiD	RSP_0467	-	3-octaprenyl-4hydroxybenzoate decarboxylase
2072	 74.23	+1	2203188..2203742	+	184	77464037	-	RSP_0468	-	putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2073	 69.29	0	2203870..2205090	-	406	77464038	-	RSP_0469	-	hypothetical protein
2074	 74.90	+1	2205174..2206691	-	505	77464039	-	RSP_0470	-	hypothetical protein
2075	 66.67	0	2206851..2207183	+	110	77464040	-	RSP_6116	-	hypothetical protein
2076	 70.12	0	2207288..2208010	+	240	77464041	-	RSP_0472	-	hypothetical protein
2077	 70.66	0	2208007..2209557	+	516	77464042	-	RSP_0473	-	phospholipase-D family protein
2078	 66.67	0	2209777..2210226	+	149	77464043	cycP	RSP_0474	-	cytochrome c'
2079	 70.67	0	2210230..2210829	+	199	77464044	-	RSP_0475	-	cytochrome b
2080	 68.53	0	2210875..2211519	-	214	77464045	-	RSP_0476	-	L-fuculose-phosphate aldolase
2081	 73.68	+1	2211874..2213370	+	498	77464046	-	RSP_0477	-	hypothetical protein
2082	 71.68	0	2213501..2214538	-	345	77464047	-	RSP_0478	-	putative lysyl-tRNA synthetase
2083	 63.49	-1	2214640..2215206	+	188	77464048	-	RSP_0479	-	elongation factor P
2084	 71.05	0	2215294..2216661	-	455	77464049	uxuB	RSP_0480	-	D-mannonate oxidoreductase
2085	 70.25	0	2216678..2217403	-	241	77464050	-	RSP_0481	-	2-deoxy-D-gluconate 3-dehydrogenase
2086	 67.64	0	2217400..2218224	-	274	77464051	kduI	RSP_0482	-	5-keto-4-deoxyuronate isomerase
2087	 67.33	0	2218366..2218668	-	100	77464052	-	RSP_0483	-	hypothetical protein
2088	 67.21	0	2218676..2219956	-	426	77464053	-	RSP_0484	-	TRAP dicarboxylate family transporter DctM subunit
2089	 67.77	0	2219959..2220504	-	181	77464054	-	RSP_0485	-	TRAP dicarboxylate family transporter DctQ subunit
2090	 63.09	-1	2220567..2221544	-	325	77464055	-	RSP_0487	-	TRAP dicarboxylate family transporter DctP subunit
2091	 69.30	0	2221570..2222976	-	468	77464056	uxaC	RSP_0488	-	glucuronate isomerase
2092	 67.50	0	2223080..2223796	+	238	77464057	-	RSP_0489	-	GntR family transcriptional regulator
2093	 73.31	+1	2223935..2224687	+	250	77464058	-	RSP_0490	-	2-keto-3-deoxygluconate kinase
2094	 71.92	0	2225114..2226445	+	443	77464059	hupT	RSP_0491	-	hydrogen uptake histidine-kinase
2095	 71.00	0	2226442..2227434	+	330	77464060	hupU	RSP_0492	-	hydrogenase small subunit
2096	 73.67	+1	2227431..2228858	+	475	77464061	hupV	RSP_0493	-	hydrogenase large subunit
2097	 75.41	+1	2229068..2231344	+	758	77464062	hypF	RSP_0494	-	hydrogenase maturation factor F
2098	 65.77	0	2231581..2232690	+	369	77464063	hupS	RSP_0495	-	hydrogenase protein small subunit
2099	 65.44	0	2232694..2234484	+	596	77464064	hupL	RSP_0496	-	hydrogenase protein large subunit
2100	 74.48	+1	2234496..2235071	+	191	77464065	-	RSP_0497	-	HupE/UreJ accessory protein
2101	 62.96	-1	2235213..2235860	+	215	77464066	hupC	RSP_0498	-	Ni, Fe hydrogenase I cytochrome b subunit
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.