IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1953	 67.57	0	2077432..2078532	+	366	77463918	-	RSP_0346	-	ABC transporter, substrate binding protein
1954	 66.89	0	2078687..2079568	+	293	77463919	-	RSP_0347	-	ABC transporter, inner membrane subunit
1955	 65.03	0	2079565..2080356	+	263	77463920	-	RSP_0348	-	ABC transporter, inner membrane subunit
1956	 69.69	0	2080373..2081431	+	352	77463921	-	RSP_0349	-	ABC transporter, ATPase subunit
1957	 69.39	0	2081485..2081925	+	146	77463922	-	RSP_0350	-	hypothetical protein
1958	 70.05	0	2081929..2082993	+	354	77463923	-	RSP_0351	-	D-threo-aldose 1-dehydrogenase
1959	 63.58	-1	2083151..2083474	-	107	77463924	-	RSP_0352	-	ferredoxin
1960	 72.63	0	2084288..2084740	+	150	77463925	-	RSP_0354	-	hypothetical protein
1961	 68.49	0	2084795..2086276	-	493	77463926	-	RSP_0355	-	serine protease
1962	 70.97	0	2086429..2087451	-	340	77463927	-	RSP_0356	-	HflC protein
1963	 69.20	0	2087451..2088632	-	393	77463928	-	RSP_0357	-	HflK protein
1964	 69.68	0	2088688..2090046	-	452	77463929	gor	RSP_0358	-	NADPH-glutathione reductase
1965	 67.43	0	2090051..2090839	-	262	77463930	cbbI	RSP_0359	-	ribose-5-phosphate isomerase
1966	 64.90	0	2090868..2091206	-	112	77463931	-	RSP_0360	-	hypothetical protein
1967	 70.51	0	2091503..2092882	+	459	77463932	sda	RSP_0361	-	L-serine ammonia-lyase
1968	 72.83	0	2092899..2093255	+	118	77463933	-	RSP_0362	-	hypothetical protein
1969	 69.59	0	2093252..2094175	+	307	77463934	-	RSP_0364	-	RarD family protein
1970	 72.39	0	2094117..2094815	-	232	77463935	-	RSP_0363	-	hypothetical protein
1971	 72.34	0	2094867..2095748	-	293	77463936	-	RSP_0365	-	hypothetical protein
1972	 65.84	0	2095851..2096093	-	80	77463937	-	RSP_6113	-	hypothetical protein
1973	 69.68	0	2096173..2097465	-	430	77463938	-	RSP_0366	-	adenylosuccinate synthetase
1974	 72.89	0	2097776..2098402	+	208	77463939	secG	RSP_0367	-	preprotein translocase subunit SecG
1975	 65.63	0	2098565..2100208	+	547	77463940	-	RSP_0368	-	CTP synthetase
1976	 69.73	0	2100387..2101169	+	260	77463941	-	RSP_0369	-	hypothetical protein
1977	 73.29	+1	2101250..2101687	+	145	77463942	-	RSP_0370	-	hypothetical protein
1978	 68.80	0	2101851..2102648	+	265	77463943	-	RSP_0371	-	ABC basic amino acid transporter, ATPase subunit
1979	 65.29	0	2102691..2103416	+	241	77463944	-	RSP_0372	-	ABC basic amino acid transporter, solute-binding protein
1980	 67.69	0	2103456..2104337	+	293	77463945	-	RSP_0373	-	ABC basic amino acid transporter, inner membrane subunit
1981	 64.37	-1	2104334..2105161	+	275	77463946	-	RSP_0374	-	ABC basic amino acid transporter, inner membrane subunit
1982	 67.71	0	2105166..2106503	+	445	77463947	-	RSP_0375	-	L-glutamine synthetase
1983	 68.44	0	2106563..2107240	+	225	77463948	-	RSP_0376	-	glutamine amidotransferase class-I
1984	 66.37	0	2107245..2108600	+	451	77463949	-	RSP_0377	-	L-glutamine synthetase
1985	 70.81	0	2108597..2109898	+	433	77463950	-	RSP_0378	-	hypothetical protein
1986	 66.59	0	2110203..2111570	+	455	77463951	-	RSP_0379	-	aminotransferase
1987	 63.60	-1	2111633..2112187	-	184	77463952	-	RSP_0380	-	hypothetical protein
1988	 64.22	-1	2112314..2112763	-	149	77463953	-	RSP_0381	-	hypothetical protein
1989	 64.29	-1	2112917..2114722	-	601	77463954	-	RSP_0382	-	poly-beta-hydroxybutyrate polymerase
1990	 65.49	0	2114824..2116095	+	423	77463955	-	RSP_0383	-	hypothetical protein
1991	 70.33	0	2116163..2116927	-	254	77463956	-	RSP_0384	-	hypothetical protein
1992	 65.17	0	2117070..2119010	+	646	77463957	-	RSP_0385	-	threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
1993	 61.35	-1	2119520..2119726	+	68	77463958	-	RSP_0386	-	cold-shock DNA-binding protein family protein
1994	 68.20	0	2119787..2120113	-	108	77463959	-	RSP_0387	-	hypothetical protein
1995	 67.90	0	2120180..2120584	-	134	77463960	-	RSP_0388	-	hypothetical protein
1996	 68.75	0	2120618..2121097	-	159	77463961	folA	RSP_0389	-	dihydrofolate reductase
1997	 67.89	0	2121097..2121993	-	298	77463962	-	RSP_0390	-	thymidylate synthase
1998	 65.03	0	2122280..2122708	+	142	77463963	-	RSP_0392	-	lactoylglutathione lyase
1999	 75.63	+1	2122870..2123940	-	356	77463964	-	RSP_0393	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
2000	 64.74	0	2123955..2124422	-	155	77463965	-	RSP_0394	-	transcriptional regulator NrdR
2001	 72.44	0	2124644..2125024	-	126	77463966	-	RSP_0396	-	hypothetical protein
2002	 64.97	0	2125036..2127042	-	668	77463967	rpoD	RSP_0395	-	RNA polymerase sigma factor RpoD
2003	 71.01	0	2127147..2129078	-	643	77463968	dnaG	RSP_0397	-	DNA primase
2004	 67.16	0	2129201..2130628	-	475	77463969	-	RSP_0398	-	dehydrogenase
2005	 66.96	0	2130992..2132692	+	566	77463970	-	RSP_0399	-	hypothetical protein
2006	 68.28	0	2132689..2133246	+	185	77463971	-	RSP_0400	-	hypothetical protein
2007	 64.80	0	2133250..2133786	+	178	77463972	-	RSP_0401	-	hypothetical protein
2008	 69.54	0	2133851..2134441	-	196	77463973	-	RSP_0402	-	TetR family transcriptional regulator
2009	 70.40	0	2134939..2136225	+	428	77463974	-	RSP_0403	-	homoserine dehydrogenase
2010	 69.46	0	2136288..2137253	+	321	77463975	glpX	RSP_0404	-	fructose 1,6-bisphosphatase II
2011	 75.06	+1	2137250..2139001	+	583	77463976	-	RSP_0405	-	single-stranded DNA-specific exonuclease
2012	 70.69	0	2139213..2140256	-	347	77463977	-	RSP_0406	-	periplasmic sensor diguanylate cyclase (GGDEF)
2013	 68.07	0	2140469..2141464	-	331	77463978	-	RSP_0407	-	D-lactate dehydrogenase
2014	 73.91	+1	2141667..2142605	+	312	77463979	-	RSP_0408	-	hypothetical protein
2015	 73.61	+1	2142602..2143480	+	292	77463980	-	RSP_0409	-	hypothetical protein
2016	 71.03	0	2143501..2144508	-	335	77463981	-	RSP_0410	-	sensor diguanylate cyclase (GGDEF)
2017	 69.22	0	2144508..2145095	-	195	77463982	-	RSP_6114	-	hypothetical protein
2018	 73.81	+1	2145159..2146880	-	573	77463983	-	RSP_0411	-	hypothetical protein
2019	 71.86	0	2147002..2147694	-	230	77463984	-	RSP_0412	-	putative phosphatase
2020	 70.97	0	2147750..2148028	-	92	77463985	-	RSP_6115	-	hypothetical protein
2021	 73.59	+1	2148157..2149542	+	461	77463986	-	RSP_0413	-	response regulator receiver modulated diguanylate cyclase
2022	 73.30	+1	2149704..2150231	-	175	77463987	-	RSP_0414	-	hypothetical protein
2023	 72.50	0	2150233..2150592	-	119	77463988	-	RSP_6227	-	hypothetical protein
2024	 72.73	0	2150594..2151187	-	197	77463989	-	RSP_0415	-	RNA polymerase sigma factor
2025	 73.52	+1	2151264..2151920	-	218	77463990	-	RSP_0416	-	calcium-binding EF-hand domain-containing protein
2026	 67.15	0	2152121..2152531	+	136	77463991	-	RSP_0418	-	hypothetical protein
2027	 73.16	+1	2152500..2153177	+	225	77463992	-	RSP_0419	-	hypothetical protein
2028	 72.80	0	2153246..2153620	-	124	77463993	-	RSP_0420	-	hypothetical protein
2029	 75.25	+1	2153636..2154136	-	166	77463994	-	RSP_0421	-	hypothetical protein
2030	 73.83	+1	2154124..2154570	-	148	77463995	-	RSP_0422	-	hypothetical protein
2031	 69.64	0	2154649..2155689	-	346	77463996	-	RSP_0423	-	aldo/keto reductase
2032	 72.58	0	2155955..2156563	+	202	77463997	-	RSP_0424	-	hypothetical protein
2033	 66.61	0	2156707..2158425	+	572	77463998	metG	RSP_0425	-	methionyl-tRNA synthetase
2034	 69.79	0	2158701..2161199	-	832	77463999	-	RSP_0426	-	Na+/H+ antiporter
2035	 62.42	-1	2161273..2161602	-	109	77464000	-	RSP_0427	-	hypothetical protein
2036	 72.79	0	2161946..2163268	-	440	77464001	-	RSP_0428	-	hypothetical protein
2037	 69.14	0	2163545..2165401	+	618	77464002	-	RSP_0429	-	multidrug ABC transporter ATP-binding protein
2038	 67.57	0	2165424..2165645	-	73	77464003	-	RSP_6228	-	hypothetical protein
2039	 74.47	+1	2165851..2166786	+	311	77464004	cobD	RSP_0430	-	adenosylcobinamide-phosphate synthase
2040	 66.99	0	2167014..2168234	-	406	77464005	-	RSP_0431	-	putative selenocysteine lyase
2041	 68.91	0	2168244..2168822	-	192	77464006	-	RSP_0432	-	hypothetical protein
2042	 67.08	0	2168819..2169298	-	159	77464007	-	RSP_0433	-	hypothetical protein
2043	 65.09	0	2170582..2171340	-	252	77464008	SufC	RSP_0437	-	SUF C, ATPase
2044	 65.06	0	2171350..2171661	-	103	77464009	-	RSP_0439	-	hypothetical protein
2045	 63.49	-1	2171696..2173237	-	513	77464010	sufB	RSP_0440	-	cysteine desulfurase activator complex subunit SufB
2046	 72.11	0	2173313..2174359	-	348	77464011	-	RSP_0442	-	putative aminotransferase
2047	 63.46	-1	2174442..2174909	-	155	77464012	-	RSP_0443	-	BadM/Rrf2 family transcriptional regulator
2048	 64.70	0	2175063..2175722	+	219	77464013	-	RSP_0444	-	hypothetical protein
2049	 69.74	0	2175719..2176303	+	194	77464014	-	RSP_0445	-	hypothetical protein
2050	 64.69	0	2176388..2177602	+	404	77464015	-	RSP_0446	-	isocitrate dehydrogenase
2051	 66.67	0	2177913..2178515	+	200	77464016	-	RSP_0447	-	hypothetical protein
2052	 67.76	0	2178615..2180435	+	606	77464017	-	RSP_0448	-	EF-Tu; elongation factor Tu
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.