IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1925	 66.96	0	2045850..2047208	-	452	77463890	hemN	RSP_0317	-	coproporphyrinogen III oxidase
1926	 71.70	0	2047282..2047977	-	231	77463891	-	RSP_0318	-	hypothetical protein
1927	 68.47	0	2047974..2048195	-	73	77463892	-	RSP_0319	-	NnrU
1928	 70.69	0	2048192..2048365	-	57	77463893	NnrT	RSP_0320	-	hypothetical protein
1929	 72.00	0	2048367..2050241	-	624	77463894	norD	RSP_0321	-	NorD nitric oxide reductase activation protein
1930	 67.92	0	2050246..2051043	-	265	77463895	norQ	RSP_0322	-	NorQ protein required for nitric oxide reductase activity
1931	 63.31	-1	2051040..2052380	-	446	77463896	norB	RSP_0323	-	nitric oxide reductase large subunit, cytochrome b
1932	 66.00	0	2052394..2052846	-	150	77463897	norC	RSP_0324	-	nitric oxide reductase subunit C, cytochrome c
1933	 70.53	0	2052996..2053202	+	68	77463898	-	RSP_0325	-	hypothetical protein
1934	 73.74	+1	2053376..2053912	+	178	77463899	-	RSP_0326	-	hypothetical protein
1935	 69.80	0	2053920..2054621	-	233	77463900	nnrR	RSP_0327	-	Crp/FNR family transcriptional regulator
1936	 69.85	0	2054833..2056026	+	397	77463901	nnrS	RSP_0328	-	hypothetical protein
1937	 68.15	0	2056160..2057170	+	336	77463902	-	RSP_0329	-	diguanylate cyclase with GAF sensor
1938	 70.62	0	2057186..2057590	-	134	77463903	-	RSP_0330	-	hypothetical protein
1939	 74.17	+1	2057613..2059451	-	612	77463904	-	RSP_0331	-	hypothetical protein
1940	 71.58	0	2059448..2061625	-	725	77463905	-	RSP_0332	-	cellulose synthase
1941	 68.99	0	2061625..2063991	-	788	77463906	-	RSP_0333	-	cellulose synthase
1942	 72.47	0	2064025..2064696	-	223	77463907	-	RSP_0334	-	hypothetical protein
1943	 70.51	0	2065080..2067449	+	789	77463908	-	RSP_0335	-	diguanylate cyclase/phosphodiesterase
1944	 69.34	0	2067539..2068360	-	273	77463909	-	RSP_0337	-	phospodiesterase
1945	 69.61	0	2068357..2069274	-	305	77463910	-	RSP_0338	-	hypothetical protein
1946	 69.82	0	2069349..2069918	-	189	77463911	-	RSP_0339	-	hypothetical protein
1947	 68.43	0	2070079..2071101	-	340	77463912	-	RSP_0340	-	hypothetical protein
1948	 69.17	0	2071291..2072568	-	425	77463913	-	RSP_0341	-	cytosine deaminase
1949	 69.73	0	2072568..2073515	-	315	77463914	-	RSP_0342	-	putative ABC sugar transporter, inner membrane subunit
1950	 71.65	0	2073607..2074650	-	347	77463915	-	RSP_0343	-	putative ABC sugar transporter, inner membrane subunit
1951	 70.94	0	2074640..2076160	-	506	77463916	-	RSP_0344	-	putative ABC sugar transporter, fused ATPase subunits
1952	 67.76	0	2076157..2077161	-	334	77463917	-	RSP_0345	-	ABC transporter periplasmic-binding protein
1953	 67.57	0	2077432..2078532	+	366	77463918	-	RSP_0346	-	ABC transporter, substrate binding protein
1954	 66.89	0	2078687..2079568	+	293	77463919	-	RSP_0347	-	ABC transporter, inner membrane subunit
1955	 65.03	0	2079565..2080356	+	263	77463920	-	RSP_0348	-	ABC transporter, inner membrane subunit
1956	 69.69	0	2080373..2081431	+	352	77463921	-	RSP_0349	-	ABC transporter, ATPase subunit
1957	 69.39	0	2081485..2081925	+	146	77463922	-	RSP_0350	-	hypothetical protein
1958	 70.05	0	2081929..2082993	+	354	77463923	-	RSP_0351	-	D-threo-aldose 1-dehydrogenase
1959	 63.58	-1	2083151..2083474	-	107	77463924	-	RSP_0352	-	ferredoxin
1960	 72.63	0	2084288..2084740	+	150	77463925	-	RSP_0354	-	hypothetical protein
1961	 68.49	0	2084795..2086276	-	493	77463926	-	RSP_0355	-	serine protease
1962	 70.97	0	2086429..2087451	-	340	77463927	-	RSP_0356	-	HflC protein
1963	 69.20	0	2087451..2088632	-	393	77463928	-	RSP_0357	-	HflK protein
1964	 69.68	0	2088688..2090046	-	452	77463929	gor	RSP_0358	-	NADPH-glutathione reductase
1965	 67.43	0	2090051..2090839	-	262	77463930	cbbI	RSP_0359	-	ribose-5-phosphate isomerase
1966	 64.90	0	2090868..2091206	-	112	77463931	-	RSP_0360	-	hypothetical protein
1967	 70.51	0	2091503..2092882	+	459	77463932	sda	RSP_0361	-	L-serine ammonia-lyase
1968	 72.83	0	2092899..2093255	+	118	77463933	-	RSP_0362	-	hypothetical protein
1969	 69.59	0	2093252..2094175	+	307	77463934	-	RSP_0364	-	RarD family protein
1970	 72.39	0	2094117..2094815	-	232	77463935	-	RSP_0363	-	hypothetical protein
1971	 72.34	0	2094867..2095748	-	293	77463936	-	RSP_0365	-	hypothetical protein
1972	 65.84	0	2095851..2096093	-	80	77463937	-	RSP_6113	-	hypothetical protein
1973	 69.68	0	2096173..2097465	-	430	77463938	-	RSP_0366	-	adenylosuccinate synthetase
1974	 72.89	0	2097776..2098402	+	208	77463939	secG	RSP_0367	-	preprotein translocase subunit SecG
1975	 65.63	0	2098565..2100208	+	547	77463940	-	RSP_0368	-	CTP synthetase
1976	 69.73	0	2100387..2101169	+	260	77463941	-	RSP_0369	-	hypothetical protein
1977	 73.29	+1	2101250..2101687	+	145	77463942	-	RSP_0370	-	hypothetical protein
1978	 68.80	0	2101851..2102648	+	265	77463943	-	RSP_0371	-	ABC basic amino acid transporter, ATPase subunit
1979	 65.29	0	2102691..2103416	+	241	77463944	-	RSP_0372	-	ABC basic amino acid transporter, solute-binding protein
1980	 67.69	0	2103456..2104337	+	293	77463945	-	RSP_0373	-	ABC basic amino acid transporter, inner membrane subunit
1981	 64.37	-1	2104334..2105161	+	275	77463946	-	RSP_0374	-	ABC basic amino acid transporter, inner membrane subunit
1982	 67.71	0	2105166..2106503	+	445	77463947	-	RSP_0375	-	L-glutamine synthetase
1983	 68.44	0	2106563..2107240	+	225	77463948	-	RSP_0376	-	glutamine amidotransferase class-I
1984	 66.37	0	2107245..2108600	+	451	77463949	-	RSP_0377	-	L-glutamine synthetase
1985	 70.81	0	2108597..2109898	+	433	77463950	-	RSP_0378	-	hypothetical protein
1986	 66.59	0	2110203..2111570	+	455	77463951	-	RSP_0379	-	aminotransferase
1987	 63.60	-1	2111633..2112187	-	184	77463952	-	RSP_0380	-	hypothetical protein
1988	 64.22	-1	2112314..2112763	-	149	77463953	-	RSP_0381	-	hypothetical protein
1989	 64.29	-1	2112917..2114722	-	601	77463954	-	RSP_0382	-	poly-beta-hydroxybutyrate polymerase
1990	 65.49	0	2114824..2116095	+	423	77463955	-	RSP_0383	-	hypothetical protein
1991	 70.33	0	2116163..2116927	-	254	77463956	-	RSP_0384	-	hypothetical protein
1992	 65.17	0	2117070..2119010	+	646	77463957	-	RSP_0385	-	threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
1993	 61.35	-1	2119520..2119726	+	68	77463958	-	RSP_0386	-	cold-shock DNA-binding protein family protein
1994	 68.20	0	2119787..2120113	-	108	77463959	-	RSP_0387	-	hypothetical protein
1995	 67.90	0	2120180..2120584	-	134	77463960	-	RSP_0388	-	hypothetical protein
1996	 68.75	0	2120618..2121097	-	159	77463961	folA	RSP_0389	-	dihydrofolate reductase
1997	 67.89	0	2121097..2121993	-	298	77463962	-	RSP_0390	-	thymidylate synthase
1998	 65.03	0	2122280..2122708	+	142	77463963	-	RSP_0392	-	lactoylglutathione lyase
1999	 75.63	+1	2122870..2123940	-	356	77463964	-	RSP_0393	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
2000	 64.74	0	2123955..2124422	-	155	77463965	-	RSP_0394	-	transcriptional regulator NrdR
2001	 72.44	0	2124644..2125024	-	126	77463966	-	RSP_0396	-	hypothetical protein
2002	 64.97	0	2125036..2127042	-	668	77463967	rpoD	RSP_0395	-	RNA polymerase sigma factor RpoD
2003	 71.01	0	2127147..2129078	-	643	77463968	dnaG	RSP_0397	-	DNA primase
2004	 67.16	0	2129201..2130628	-	475	77463969	-	RSP_0398	-	dehydrogenase
2005	 66.96	0	2130992..2132692	+	566	77463970	-	RSP_0399	-	hypothetical protein
2006	 68.28	0	2132689..2133246	+	185	77463971	-	RSP_0400	-	hypothetical protein
2007	 64.80	0	2133250..2133786	+	178	77463972	-	RSP_0401	-	hypothetical protein
2008	 69.54	0	2133851..2134441	-	196	77463973	-	RSP_0402	-	TetR family transcriptional regulator
2009	 70.40	0	2134939..2136225	+	428	77463974	-	RSP_0403	-	homoserine dehydrogenase
2010	 69.46	0	2136288..2137253	+	321	77463975	glpX	RSP_0404	-	fructose 1,6-bisphosphatase II
2011	 75.06	+1	2137250..2139001	+	583	77463976	-	RSP_0405	-	single-stranded DNA-specific exonuclease
2012	 70.69	0	2139213..2140256	-	347	77463977	-	RSP_0406	-	periplasmic sensor diguanylate cyclase (GGDEF)
2013	 68.07	0	2140469..2141464	-	331	77463978	-	RSP_0407	-	D-lactate dehydrogenase
2014	 73.91	+1	2141667..2142605	+	312	77463979	-	RSP_0408	-	hypothetical protein
2015	 73.61	+1	2142602..2143480	+	292	77463980	-	RSP_0409	-	hypothetical protein
2016	 71.03	0	2143501..2144508	-	335	77463981	-	RSP_0410	-	sensor diguanylate cyclase (GGDEF)
2017	 69.22	0	2144508..2145095	-	195	77463982	-	RSP_6114	-	hypothetical protein
2018	 73.81	+1	2145159..2146880	-	573	77463983	-	RSP_0411	-	hypothetical protein
2019	 71.86	0	2147002..2147694	-	230	77463984	-	RSP_0412	-	putative phosphatase
2020	 70.97	0	2147750..2148028	-	92	77463985	-	RSP_6115	-	hypothetical protein
2021	 73.59	+1	2148157..2149542	+	461	77463986	-	RSP_0413	-	response regulator receiver modulated diguanylate cyclase
2022	 73.30	+1	2149704..2150231	-	175	77463987	-	RSP_0414	-	hypothetical protein
2023	 72.50	0	2150233..2150592	-	119	77463988	-	RSP_6227	-	hypothetical protein
2024	 72.73	0	2150594..2151187	-	197	77463989	-	RSP_0415	-	RNA polymerase sigma factor
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.