IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1819	 58.89	-2	1929613..1930242	-	209	77463784	-	RSP_6102	-	hypothetical protein
1820	 68.84	0	1930262..1931503	-	413	77463785	int	RSP_0217	-	phage-related integrase
1821	 70.16	0	1932095..1934158	-	687	77463786	mcpM	RSP_0218	-	methyl accepting chemotaxis protein
1822	 61.85	-1	1934696..1934944	+	82	77463787	-	RSP_0219	-	hypothetical protein
1823	 69.52	0	1935301..1935510	+	69	77463788	-	RSP_0220	-	hypothetical protein
1824	 68.52	0	1935581..1936066	+	161	77463789	-	RSP_6103	-	hypothetical protein
1825	 57.25	-2	1936160..1938697	+	845	77463790	-	RSP_0221	-	plasma membrane H+-transporting two-sector ATPase, C subunit
1826	 58.57	-2	1938711..1939982	+	423	77463791	-	RSP_0223	-	hypothetical protein
1827	 56.86	-2	1939988..1942159	+	723	77463792	-	RSP_0224	-	ATP-dependent helicase
1828	 71.60	0	1943574..1944140	-	188	77463793	-	RSP_6104	-	calcium-binding protein
1829	 72.29	0	1944352..1945401	+	349	77463794	-	RSP_0226	-	naringenin-chalcone synthase
1830	 72.22	0	1945398..1945901	+	167	77463795	-	RSP_0227	-	hypothetical protein
1831	 71.86	0	1945888..1947486	+	532	77463796	-	RSP_0229	-	multidrug efflux pump, MF superfamily
1832	 73.69	+1	1947434..1948387	-	317	77463797	hmuS	RSP_0228	-	putative hemin transport protein
1833	 67.86	0	1948474..1950069	-	531	77463798	-	RSP_0230	-	neutral zinc metallopeptidase
1834	 67.65	0	1950102..1950509	-	135	77463799	-	RSP_6105	-	hypothetical protein
1835	 71.93	0	1950647..1951747	-	366	77463800	motB	RSP_0231	-	flagellar MotB protein
1836	 62.07	-1	1951757..1952518	-	253	77463801	motA	RSP_0233	-	flagellar motor protein MotA
1837	 68.82	0	1953030..1954142	-	370	77463802	tlpL	RSP_0234	-	TlpL, putative cytoplasmic chemoreceptor
1838	 76.32	+1	1954543..1954977	-	144	77463803	-	RSP_6106	-	hypothetical protein
1839	 69.18	0	1955064..1956098	+	344	77463804	moaA	RSP_0235	-	molybdenum cofactor biosynthesis protein A
1840	 72.10	0	1956381..1957724	-	447	77463805	-	RSP_0236	-	AgaE protein
1841	 71.05	0	1957724..1958887	-	387	77463806	argE	RSP_0237	-	acetylornithine deacetylase
1842	 69.08	0	1959022..1960305	-	427	77463807	-	RSP_0238	-	hypothetical protein
1843	 66.67	0	1960590..1962038	-	482	77463808	PntB	RSP_0239	-	pyridine nucleotide transhydrogenase beta subunit
1844	 67.11	0	1962049..1963620	-	523	77463809	pntA	RSP_0240	-	NAD(P) transhydrogenase subunit alpha
1845	 73.30	+1	1963759..1964286	-	175	77463810	-	RSP_0241	-	S-isoprenylcysteine methyltransferase-like protein
1846	 72.63	0	1964324..1965514	+	396	77463811	-	RSP_0242	-	kynureninase
1847	 70.07	0	1965738..1966766	+	342	77463812	-	RSP_0243	-	putative lipoprotein
1848	 70.33	0	1967154..1967999	-	281	77463813	-	RSP_0244	-	glutamine amidotransferase
1849	 71.65	0	1968226..1969428	-	400	77463814	-	RSP_0245	-	Serine-pyruvate aminotransferase/aspartate aminotransferase
1850	 69.66	0	1969599..1971371	+	590	77463815	-	RSP_0246	-	ABC lipid efflux transporter, fused ATPase and inner membrane subunits
1851	 70.57	0	1971361..1972128	+	255	77463816	-	RSP_0247	-	aminomethyltransferase related to GcvT
1852	 62.59	-1	1972274..1972837	-	187	77463817	-	RSP_0248	-	elongation factor P
1853	 63.61	-1	1973046..1973372	+	108	77463818	-	RSP_6107	-	hypothetical protein
1854	 70.58	0	1973791..1974531	-	246	77463819	-	RSP_0250	-	hypothetical protein
1855	 69.24	0	1974662..1976062	-	466	77463820	-	RSP_0251	-	Outer membrane efflux protein
1856	 66.51	0	1976110..1976763	-	217	77463821	-	RSP_0252	-	protein-L-isoaspartate carboxylmethyltransferase
1857	 73.46	+1	1976931..1978313	+	460	77463822	-	RSP_0253	-	glycine/D-amino acid oxidase (deaminating)
1858	 69.70	0	1978340..1980286	-	648	77463823	dxsA	RSP_0254	-	1-deoxy-D-xylulose-5-phosphate synthase
1859	 60.24	-2	1980460..1980708	-	82	77463824	pufX	RSP_0255	-	Intrinsic membrane pufX protien
1860	 65.48	0	1980721..1981647	-	308	77463825	pufM	RSP_0256	-	photosynthetic reaction center subunit M
1861	 62.07	-1	1981640..1982488	-	282	77463826	pufL	RSP_0257	-	PufL, photosynthetic reaction center L subunit
1862	 56.50	-2	1982612..1982788	-	58	77463827	pufA	RSP_0258	-	LHI alpha, light-harvesting B875 protein
1863	 58.00	-2	1982802..1982951	-	49	77463828	pufB	RSP_6108	-	LHI beta, light-harvesting B875 subunit
1864	 57.14	-2	1982953..1983015	-	20	77463829	pufK	RSP_6109	-	transcriptional regulatory protein pufK
1865	 66.24	0	1983082..1983315	-	77	77463830	pufQ	RSP_0259	-	protein pufQ
1866	 66.06	0	1983312..1984787	-	491	77463831	bchZ	RSP_0260	-	putative chlorophyllide reductase, BchZ subunit
1867	 70.84	0	1984787..1986295	-	502	77463832	bchY	RSP_0261	-	chlorophyllide reductase, BchY subunit
1868	 65.97	0	1986371..1987372	-	333	77463833	bchX	RSP_0262	-	chlorophyllide reductase, BchX subunit
1869	 69.91	0	1987369..1988325	-	318	77463834	bchC	RSP_0263	-	chlorophyll synthesis pathway, bchC
1870	 71.58	0	1988478..1989617	-	379	77463835	crtF	RSP_0264	-	hydroxyneurosporene-O-methyltransferase
1871	 71.86	0	1989670..1990536	-	288	77463836	crtE	RSP_0265	-	farnesyl-diphosphate synthase
1872	 73.05	+1	1990681..1992168	+	495	77463837	crtD	RSP_0266	-	methoxyneurosporene dehydrogenase
1873	 71.19	0	1992234..1993073	+	279	77463838	ctrC	RSP_0267	-	hydroxyneurosporene synthase
1874	 65.83	0	1993234..1993710	-	158	77463839	tspO	RSP_0269	-	tryptophan rich sensory protein
1875	 72.57	0	1993742..1994809	-	355	77463840	crtB	RSP_0270	-	phytoene synthase
1876	 67.24	0	1994806..1996362	-	518	77463841	crtI	RSP_0271	-	phytoene dehydrogenase
1877	 67.59	0	1996520..1997494	+	324	77463842	crtA	RSP_0272	-	spheroidene monooxygenase
1878	 70.65	0	1997499..1998503	+	334	77463843	bchI	RSP_0273	-	magnesium chelatase subunit I
1879	 76.52	+1	1998500..2000194	+	564	77463844	bchD	RSP_0274	-	magnesium chelatase subunit D
1880	 71.40	0	2000197..2001063	+	288	77463845	bchO	RSP_0275	-	magnesium-chelatase, BchO
1881	 68.35	0	2001312..2001845	-	177	77463846	-	RSP_0276	-	isopentenyl-diphosphate delta-isomerase
1882	 67.43	0	2001848..2003032	-	394	77463847	bchP	RSP_0277	-	geranylgeranyl hydrogenase
1883	 71.18	0	2003035..2004318	-	427	77463848	-	RSP_0278	-	putative light-harvesting 1 (B870) complex assembly protein PucC
1884	 68.43	0	2004315..2005223	-	302	77463849	bchG	RSP_0279	-	bacteriochlorophyll/chlorophyll a synthase
1885	 72.14	0	2005297..2005917	-	206	77463850	bchJ	RSP_0280	-	bacteriochlorophyll synthase, 23 kDa subunit (bchJ)
1886	 65.04	0	2005924..2007762	-	612	77463851	bchE	RSP_0281	-	magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66 kDa subunit(bchE)
1887	 68.03	0	2007910..2009304	-	464	77463852	ppsR	RSP_0282	-	transcriptional regulator PpsR
1888	 68.05	0	2009363..2010157	-	264	77463853	ppaA	RSP_0283	-	regulatory protein, PpaA
1889	 66.46	0	2010530..2011012	+	160	77463854	bchF	RSP_0284	-	2-vinyl bacteriochlorophyllide hydratase
1890	 71.87	0	2011009..2012295	+	428	77463855	bchN	RSP_0285	-	light-independent protochlorophyllide reductase subunit N
1891	 68.66	0	2012366..2013970	+	534	77463856	bchB	RSP_0286	-	light-independent protochlorophyllide reductase subunit B
1892	 68.98	0	2013960..2017541	+	1193	77463857	bchH	RSP_0287	-	magnesium chelatase subunit H
1893	 64.65	0	2017603..2018496	+	297	77463858	chlL	RSP_0288	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
1894	 67.71	0	2018540..2019208	+	222	77463859	bchM	RSP_0289	-	Mg-protoporphyrin IX methyl transferase
1895	 70.21	0	2019205..2020644	+	479	77463860	-	RSP_0290	-	light-harvesting 1 (B870) complex assembly
1896	 66.79	0	2020663..2021445	+	260	77463861	puhA	RSP_0291	-	reaction centre H protein
1897	 71.16	0	2021573..2022217	+	214	77463862	-	RSP_0292	-	hypothetical protein
1898	 68.17	0	2022294..2022758	+	154	77463863	-	RSP_0293	-	hypothetical protein
1899	 64.31	-1	2022780..2023076	+	98	77463864	-	RSP_6110	-	hypothetical protein
1900	 64.84	0	2023073..2024164	+	363	77463865	-	RSP_0294	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1901	 68.73	0	2024226..2025098	+	290	77463866	-	RSP_0295	-	hypothetical protein
1902	 64.38	-1	2025438..2025875	+	145	77463867	cycA	RSP_0296	-	cytochrome c2
1903	 66.67	0	2026281..2026979	-	232	77463868	-	RSP_0297	-	ABC branched chain amino acid transporter, ATPase subunit
1904	 67.07	0	2026976..2027719	-	247	77463869	-	RSP_0298	-	ABC branched chain amino acid transporter, ATPase subunit
1905	 69.10	0	2027716..2028948	-	410	77463870	-	RSP_0299	-	ABC branched chain amino acid transporter, inner membrane subunit
1906	 70.55	0	2029315..2031243	-	642	77463871	-	RSP_0300	-	ABC branched chain amino acid transporter, inner membrane subunit
1907	 62.61	-1	2031307..2032587	-	426	77463872	-	RSP_0301	-	ABC branched chain amino acid transporter, substrate binding protein
1908	 69.23	0	2032887..2033510	-	207	77463873	ureG	RSP_0302	-	urease accessory protein G
1909	 74.88	+1	2033507..2034139	-	210	77463874	ureF	RSP_0303	-	urease accessory protein UreF
1910	 71.22	0	2034136..2034684	-	182	77463875	ureE	RSP_0304	-	urease accessory protein UreE
1911	 70.24	0	2034681..2035100	-	139	77463876	-	RSP_0305	-	hypothetical protein
1912	 67.96	0	2035102..2036808	-	568	77463877	ureC	RSP_6111	-	urease subunit alpha
1913	 69.76	0	2036968..2037840	+	290	77463878	-	RSP_0306	-	class I diheme cytochrome c
1914	 72.01	0	2037896..2038213	-	105	77463879	-	RSP_0307	-	antifreeze protein, type I
1915	 63.73	-1	2038238..2038543	-	101	77463880	ureB	RSP_0308	-	urease subunit beta
1916	 65.02	0	2038594..2038896	-	100	77463881	ureA	RSP_0309	-	urease subunit gamma
1917	 75.85	+1	2038908..2039735	-	275	77463882	ureD	RSP_0310	-	urease accessory protein UreD
1918	 72.94	+1	2039862..2040977	+	371	77463883	-	RSP_0311	-	putative aminotransferase protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.