IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1784	 67.84	0	1896679..1897530	-	283	77463749	-	RSP_0180	-	ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit
1785	 68.70	0	1897527..1898462	-	311	77463750	-	RSP_0181	-	ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit
1786	 66.87	0	1899372..1900823	-	483	161723328	dht	RSP_0183	-	dihydropyrimidinase
1787	 70.32	0	1900952..1902211	-	419	77463752	-	RSP_0184	-	allantoate amidohydrolase
1788	 65.72	0	1902349..1902981	+	210	77463753	-	RSP_0185	-	TetR family transcriptional regulator
1789	 65.85	0	1903171..1903782	+	203	77463754	-	RSP_0186	-	TetR family transcriptional regulator
1790	 66.51	0	1903823..1905127	-	434	77463755	-	RSP_0187	-	dihydropyrimidine dehydrogenase
1791	 66.85	0	1905200..1905739	-	179	77463756	-	RSP_0188	-	hypothetical protein
1792	 70.85	0	1905803..1907140	-	445	77463757	-	RSP_0189	-	putative oxidoreductase
1793	 68.56	0	1907274..1907906	+	210	77463758	accB	RSP_0190	-	biotin carboxyl carrier protein
1794	 66.07	0	1907914..1909260	+	448	77463759	accC	RSP_0191	-	acetyl-CoA carboxylase biotin carboxylase subunit
1795	 68.99	0	1909280..1909924	+	214	77463760	aat	RSP_0192	-	leucyl/phenylalanyl-tRNA--protein transferase
1796	 70.16	0	1909873..1910244	-	123	77463761	-	RSP_0193	-	hypothetical protein
1797	 66.88	0	1910241..1910711	-	156	77463762	-	RSP_0194	-	ABC transporter substrate-binding protein
1798	 66.40	0	1910711..1911085	-	124	77463763	-	RSP_0195	-	NADH dehydrogenase
1799	 63.19	-1	1911210..1912475	-	421	77463764	clpX	RSP_0196	-	ATP-dependent protease ATP-binding subunit
1800	 63.35	-1	1912600..1913232	-	210	77463765	clpP	RSP_0197	-	ATP-dependent Clp protease proteolytic subunit ClpP
1801	 69.46	0	1913399..1914007	-	202	77463766	-	RSP_0198	-	phosphatidylglycerophosphate synthase
1802	 70.23	0	1914123..1915328	+	401	77463767	-	RSP_0200	-	hypothetical protein
1803	 74.07	+1	1915325..1917013	+	562	77463768	-	RSP_0201	-	ABC transporter, fused inner membrane subunits
1804	 73.02	+1	1917010..1917654	+	214	77463769	-	RSP_6101	-	ABC transporter, ATPase subunit
1805	 74.73	+1	1917787..1918257	+	156	77463770	-	RSP_0202	-	hypothetical protein
1806	 69.39	0	1918334..1919653	-	439	77463771	-	RSP_0203	-	signal transduction kinase protein
1807	 72.48	0	1919694..1920605	+	303	77463772	-	RSP_0204	-	metallo-beta-lactamase family protein
1808	 58.22	-2	1920763..1921188	+	141	77463773	-	RSP_0205	-	hypothetical protein
1809	 63.12	-1	1921201..1921707	-	168	77463774	-	RSP_0206	-	hypothetical protein
1810	 68.05	0	1921743..1922249	-	168	77463775	-	RSP_0207	-	hypothetical protein
1811	 69.59	0	1922251..1923312	-	353	77463776	-	RSP_0208	-	hypothetical protein
1812	 70.99	0	1923314..1923868	-	184	77463777	-	RSP_0209	-	prophage Lp3 protein 18
1813	 70.20	0	1923868..1925028	-	386	77463778	-	RSP_0211	-	hypothetical protein
1814	 67.25	0	1925115..1925456	-	113	77463779	-	RSP_0212	-	HNH nuclease
1815	 69.63	0	1925447..1927102	-	551	77463780	-	RSP_0213	-	Phage terminase-like protein large subunit
1816	 65.36	0	1927099..1927404	-	101	77463781	-	RSP_0214	-	phage protein
1817	 67.26	0	1927567..1928904	-	445	77463782	-	RSP_0215	-	hypothetical protein
1818	 62.91	-1	1929125..1929337	-	70	77463783	-	RSP_0216	-	hypothetical protein
1819	 58.89	-2	1929613..1930242	-	209	77463784	-	RSP_6102	-	hypothetical protein
1820	 68.84	0	1930262..1931503	-	413	77463785	int	RSP_0217	-	phage-related integrase
1821	 70.16	0	1932095..1934158	-	687	77463786	mcpM	RSP_0218	-	methyl accepting chemotaxis protein
1822	 61.85	-1	1934696..1934944	+	82	77463787	-	RSP_0219	-	hypothetical protein
1823	 69.52	0	1935301..1935510	+	69	77463788	-	RSP_0220	-	hypothetical protein
1824	 68.52	0	1935581..1936066	+	161	77463789	-	RSP_6103	-	hypothetical protein
1825	 57.25	-2	1936160..1938697	+	845	77463790	-	RSP_0221	-	plasma membrane H+-transporting two-sector ATPase, C subunit
1826	 58.57	-2	1938711..1939982	+	423	77463791	-	RSP_0223	-	hypothetical protein
1827	 56.86	-2	1939988..1942159	+	723	77463792	-	RSP_0224	-	ATP-dependent helicase
1828	 71.60	0	1943574..1944140	-	188	77463793	-	RSP_6104	-	calcium-binding protein
1829	 72.29	0	1944352..1945401	+	349	77463794	-	RSP_0226	-	naringenin-chalcone synthase
1830	 72.22	0	1945398..1945901	+	167	77463795	-	RSP_0227	-	hypothetical protein
1831	 71.86	0	1945888..1947486	+	532	77463796	-	RSP_0229	-	multidrug efflux pump, MF superfamily
1832	 73.69	+1	1947434..1948387	-	317	77463797	hmuS	RSP_0228	-	putative hemin transport protein
1833	 67.86	0	1948474..1950069	-	531	77463798	-	RSP_0230	-	neutral zinc metallopeptidase
1834	 67.65	0	1950102..1950509	-	135	77463799	-	RSP_6105	-	hypothetical protein
1835	 71.93	0	1950647..1951747	-	366	77463800	motB	RSP_0231	-	flagellar MotB protein
1836	 62.07	-1	1951757..1952518	-	253	77463801	motA	RSP_0233	-	flagellar motor protein MotA
1837	 68.82	0	1953030..1954142	-	370	77463802	tlpL	RSP_0234	-	TlpL, putative cytoplasmic chemoreceptor
1838	 76.32	+1	1954543..1954977	-	144	77463803	-	RSP_6106	-	hypothetical protein
1839	 69.18	0	1955064..1956098	+	344	77463804	moaA	RSP_0235	-	molybdenum cofactor biosynthesis protein A
1840	 72.10	0	1956381..1957724	-	447	77463805	-	RSP_0236	-	AgaE protein
1841	 71.05	0	1957724..1958887	-	387	77463806	argE	RSP_0237	-	acetylornithine deacetylase
1842	 69.08	0	1959022..1960305	-	427	77463807	-	RSP_0238	-	hypothetical protein
1843	 66.67	0	1960590..1962038	-	482	77463808	PntB	RSP_0239	-	pyridine nucleotide transhydrogenase beta subunit
1844	 67.11	0	1962049..1963620	-	523	77463809	pntA	RSP_0240	-	NAD(P) transhydrogenase subunit alpha
1845	 73.30	+1	1963759..1964286	-	175	77463810	-	RSP_0241	-	S-isoprenylcysteine methyltransferase-like protein
1846	 72.63	0	1964324..1965514	+	396	77463811	-	RSP_0242	-	kynureninase
1847	 70.07	0	1965738..1966766	+	342	77463812	-	RSP_0243	-	putative lipoprotein
1848	 70.33	0	1967154..1967999	-	281	77463813	-	RSP_0244	-	glutamine amidotransferase
1849	 71.65	0	1968226..1969428	-	400	77463814	-	RSP_0245	-	Serine-pyruvate aminotransferase/aspartate aminotransferase
1850	 69.66	0	1969599..1971371	+	590	77463815	-	RSP_0246	-	ABC lipid efflux transporter, fused ATPase and inner membrane subunits
1851	 70.57	0	1971361..1972128	+	255	77463816	-	RSP_0247	-	aminomethyltransferase related to GcvT
1852	 62.59	-1	1972274..1972837	-	187	77463817	-	RSP_0248	-	elongation factor P
1853	 63.61	-1	1973046..1973372	+	108	77463818	-	RSP_6107	-	hypothetical protein
1854	 70.58	0	1973791..1974531	-	246	77463819	-	RSP_0250	-	hypothetical protein
1855	 69.24	0	1974662..1976062	-	466	77463820	-	RSP_0251	-	Outer membrane efflux protein
1856	 66.51	0	1976110..1976763	-	217	77463821	-	RSP_0252	-	protein-L-isoaspartate carboxylmethyltransferase
1857	 73.46	+1	1976931..1978313	+	460	77463822	-	RSP_0253	-	glycine/D-amino acid oxidase (deaminating)
1858	 69.70	0	1978340..1980286	-	648	77463823	dxsA	RSP_0254	-	1-deoxy-D-xylulose-5-phosphate synthase
1859	 60.24	-2	1980460..1980708	-	82	77463824	pufX	RSP_0255	-	Intrinsic membrane pufX protien
1860	 65.48	0	1980721..1981647	-	308	77463825	pufM	RSP_0256	-	photosynthetic reaction center subunit M
1861	 62.07	-1	1981640..1982488	-	282	77463826	pufL	RSP_0257	-	PufL, photosynthetic reaction center L subunit
1862	 56.50	-2	1982612..1982788	-	58	77463827	pufA	RSP_0258	-	LHI alpha, light-harvesting B875 protein
1863	 58.00	-2	1982802..1982951	-	49	77463828	pufB	RSP_6108	-	LHI beta, light-harvesting B875 subunit
1864	 57.14	-2	1982953..1983015	-	20	77463829	pufK	RSP_6109	-	transcriptional regulatory protein pufK
1865	 66.24	0	1983082..1983315	-	77	77463830	pufQ	RSP_0259	-	protein pufQ
1866	 66.06	0	1983312..1984787	-	491	77463831	bchZ	RSP_0260	-	putative chlorophyllide reductase, BchZ subunit
1867	 70.84	0	1984787..1986295	-	502	77463832	bchY	RSP_0261	-	chlorophyllide reductase, BchY subunit
1868	 65.97	0	1986371..1987372	-	333	77463833	bchX	RSP_0262	-	chlorophyllide reductase, BchX subunit
1869	 69.91	0	1987369..1988325	-	318	77463834	bchC	RSP_0263	-	chlorophyll synthesis pathway, bchC
1870	 71.58	0	1988478..1989617	-	379	77463835	crtF	RSP_0264	-	hydroxyneurosporene-O-methyltransferase
1871	 71.86	0	1989670..1990536	-	288	77463836	crtE	RSP_0265	-	farnesyl-diphosphate synthase
1872	 73.05	+1	1990681..1992168	+	495	77463837	crtD	RSP_0266	-	methoxyneurosporene dehydrogenase
1873	 71.19	0	1992234..1993073	+	279	77463838	ctrC	RSP_0267	-	hydroxyneurosporene synthase
1874	 65.83	0	1993234..1993710	-	158	77463839	tspO	RSP_0269	-	tryptophan rich sensory protein
1875	 72.57	0	1993742..1994809	-	355	77463840	crtB	RSP_0270	-	phytoene synthase
1876	 67.24	0	1994806..1996362	-	518	77463841	crtI	RSP_0271	-	phytoene dehydrogenase
1877	 67.59	0	1996520..1997494	+	324	77463842	crtA	RSP_0272	-	spheroidene monooxygenase
1878	 70.65	0	1997499..1998503	+	334	77463843	bchI	RSP_0273	-	magnesium chelatase subunit I
1879	 76.52	+1	1998500..2000194	+	564	77463844	bchD	RSP_0274	-	magnesium chelatase subunit D
1880	 71.40	0	2000197..2001063	+	288	77463845	bchO	RSP_0275	-	magnesium-chelatase, BchO
1881	 68.35	0	2001312..2001845	-	177	77463846	-	RSP_0276	-	isopentenyl-diphosphate delta-isomerase
1882	 67.43	0	2001848..2003032	-	394	77463847	bchP	RSP_0277	-	geranylgeranyl hydrogenase
1883	 71.18	0	2003035..2004318	-	427	77463848	-	RSP_0278	-	putative light-harvesting 1 (B870) complex assembly protein PucC
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.