IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1741	 68.33	0	1849677..1851116	+	479	77463706	-	RSP_0135	-	hypothetical protein
1742	 67.15	0	1851235..1852068	+	277	77463707	-	RSP_0136	-	putative integrase for prophage CP-933U
1743	 58.62	-2	1852329..1853036	-	235	77463708	-	RSP_0137	-	hypothetical protein
1744	 65.53	0	1853174..1853524	-	116	77463709	-	RSP_0138	-	hypothetical protein
1745	 63.41	-1	1854206..1854604	+	132	77463710	rpsF	RSP_0139	-	30S ribosomal protein S6
1746	 64.04	-1	1854625..1854852	+	75	77463711	rpsR	RSP_0140	-	30S ribosomal protein S18
1747	 66.14	0	1854865..1855434	+	189	77463712	rplI	RSP_0141	-	50S ribosomal protein L9
1748	 64.72	0	1855758..1857092	-	444	77463713	tig	RSP_0142	-	trigger factor
1749	 72.82	0	1857400..1857870	+	156	77463714	-	RSP_6097	-	hypothetical protein
1750	 63.42	-1	1859643..1859981	+	112	77463715	glnB	RSP_0146	-	nitrogen regulatory protein P-II
1751	 63.19	-1	1860063..1861472	+	469	77463716	glnA	RSP_0147	-	L-glutamine synthetase
1752	 69.42	0	1861665..1862717	-	350	77463717	-	RSP_0148	-	Signal transduction histidine kinase
1753	 59.82	-2	1862714..1863151	-	145	77463718	-	RSP_0149	-	CheY-like receiver protein
1754	 67.81	0	1863148..1864632	-	494	77463719	-	RSP_0150	-	multi-sensor signal transduction histidine kinase
1755	 69.21	0	1864928..1866067	+	379	77463720	-	RSP_0152	-	P-loop ATPase
1756	 72.31	0	1866064..1867374	+	436	77463721	-	RSP_0151	-	hypothetical protein
1757	 69.62	0	1867577..1868254	-	225	77463722	-	RSP_0153	-	hypothetical protein
1758	 71.59	0	1868401..1869273	-	290	77463723	-	RSP_0154	-	3-hydroxyisobutyrate dehydrogenase
1759	 71.80	0	1869270..1870301	-	343	77463724	-	RSP_0155	-	enoyl-CoA hydratase
1760	 68.33	0	1870298..1871437	-	379	77463725	-	RSP_0156	-	Acyl-CoA dehydrogenase
1761	 70.41	0	1871561..1871854	-	97	77463726	-	RSP_6098	-	hypothetical protein
1762	 67.78	0	1872062..1872961	-	299	77463727	-	RSP_0157	-	Beta-mannanase
1763	 69.64	0	1872975..1874858	-	627	77463728	-	RSP_0158	-	cellulose synthase-like protein
1764	 70.80	0	1874842..1875834	-	330	77463729	galE-2	RSP_0159	-	UDP-galactose 4-epimerase
1765	 66.28	0	1875827..1876864	-	345	77463730	-	RSP_0160	-	NAD-dependent epimerase/dehydratase family protein
1766	 66.39	0	1877726..1878826	+	366	77463731	-	RSP_0161	-	spermidine/putrescine-binding periplasmic protein
1767	 66.67	0	1878943..1879134	+	63	77463732	-	RSP_0162	-	hypothetical protein
1768	 70.85	0	1879205..1880878	-	557	77463733	-	RSP_0163	-	putative iron(III) ABC transporter, fused inner membrane subunits
1769	 61.96	-1	1881031..1881285	-	84	77463734	-	RSP_0164	-	hypothetical protein
1770	 67.59	0	1881422..1881637	+	71	77463735	-	RSP_0165	-	hypothetical protein
1771	 65.41	0	1882044..1882361	-	105	77463736	dksA	RSP_0166	-	DnaK suppressor protein
1772	 71.53	0	1882687..1883118	+	143	77463737	-	RSP_0167	-	hypothetical protein
1773	 72.74	0	1883377..1884348	-	323	77463738	-	RSP_6099	-	flagellar switch protein FliM
1774	 68.79	0	1884473..1887157	-	894	77463739	-	RSP_0169	-	Na+/solute symporter
1775	 74.23	+1	1887157..1887447	-	96	77463740	-	RSP_0170	-	hypothetical protein
1776	 66.67	0	1887444..1887812	-	122	77463741	-	RSP_0171	-	response regulator receiver protein
1777	 74.90	+1	1887974..1889260	-	428	77463742	-	RSP_0172	-	transcriptional regulator
1778	 68.56	0	1889397..1890242	-	281	77463743	-	RSP_0173	-	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase
1779	 71.12	0	1890252..1890992	-	246	77463744	ucpA	RSP_0174	-	short-chain dehydrogenase
1780	 70.81	0	1891185..1892126	+	313	77463745	-	RSP_0175	-	lactate dehydrogenase and related dehydrogenase
1781	 69.42	0	1892163..1893944	-	593	77463746	-	RSP_0176	-	dihydroxy-acid dehydratase
1782	 70.93	0	1894242..1895624	+	460	77463747	-	RSP_0177	-	FAD/FMN-containing dehydrogenase
1783	 66.16	0	1895669..1896649	-	326	77463748	-	RSP_0179	-	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components TauA
1784	 67.84	0	1896679..1897530	-	283	77463749	-	RSP_0180	-	ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit
1785	 68.70	0	1897527..1898462	-	311	77463750	-	RSP_0181	-	ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit
1786	 66.87	0	1899372..1900823	-	483	161723328	dht	RSP_0183	-	dihydropyrimidinase
1787	 70.32	0	1900952..1902211	-	419	77463752	-	RSP_0184	-	allantoate amidohydrolase
1788	 65.72	0	1902349..1902981	+	210	77463753	-	RSP_0185	-	TetR family transcriptional regulator
1789	 65.85	0	1903171..1903782	+	203	77463754	-	RSP_0186	-	TetR family transcriptional regulator
1790	 66.51	0	1903823..1905127	-	434	77463755	-	RSP_0187	-	dihydropyrimidine dehydrogenase
1791	 66.85	0	1905200..1905739	-	179	77463756	-	RSP_0188	-	hypothetical protein
1792	 70.85	0	1905803..1907140	-	445	77463757	-	RSP_0189	-	putative oxidoreductase
1793	 68.56	0	1907274..1907906	+	210	77463758	accB	RSP_0190	-	biotin carboxyl carrier protein
1794	 66.07	0	1907914..1909260	+	448	77463759	accC	RSP_0191	-	acetyl-CoA carboxylase biotin carboxylase subunit
1795	 68.99	0	1909280..1909924	+	214	77463760	aat	RSP_0192	-	leucyl/phenylalanyl-tRNA--protein transferase
1796	 70.16	0	1909873..1910244	-	123	77463761	-	RSP_0193	-	hypothetical protein
1797	 66.88	0	1910241..1910711	-	156	77463762	-	RSP_0194	-	ABC transporter substrate-binding protein
1798	 66.40	0	1910711..1911085	-	124	77463763	-	RSP_0195	-	NADH dehydrogenase
1799	 63.19	-1	1911210..1912475	-	421	77463764	clpX	RSP_0196	-	ATP-dependent protease ATP-binding subunit
1800	 63.35	-1	1912600..1913232	-	210	77463765	clpP	RSP_0197	-	ATP-dependent Clp protease proteolytic subunit ClpP
1801	 69.46	0	1913399..1914007	-	202	77463766	-	RSP_0198	-	phosphatidylglycerophosphate synthase
1802	 70.23	0	1914123..1915328	+	401	77463767	-	RSP_0200	-	hypothetical protein
1803	 74.07	+1	1915325..1917013	+	562	77463768	-	RSP_0201	-	ABC transporter, fused inner membrane subunits
1804	 73.02	+1	1917010..1917654	+	214	77463769	-	RSP_6101	-	ABC transporter, ATPase subunit
1805	 74.73	+1	1917787..1918257	+	156	77463770	-	RSP_0202	-	hypothetical protein
1806	 69.39	0	1918334..1919653	-	439	77463771	-	RSP_0203	-	signal transduction kinase protein
1807	 72.48	0	1919694..1920605	+	303	77463772	-	RSP_0204	-	metallo-beta-lactamase family protein
1808	 58.22	-2	1920763..1921188	+	141	77463773	-	RSP_0205	-	hypothetical protein
1809	 63.12	-1	1921201..1921707	-	168	77463774	-	RSP_0206	-	hypothetical protein
1810	 68.05	0	1921743..1922249	-	168	77463775	-	RSP_0207	-	hypothetical protein
1811	 69.59	0	1922251..1923312	-	353	77463776	-	RSP_0208	-	hypothetical protein
1812	 70.99	0	1923314..1923868	-	184	77463777	-	RSP_0209	-	prophage Lp3 protein 18
1813	 70.20	0	1923868..1925028	-	386	77463778	-	RSP_0211	-	hypothetical protein
1814	 67.25	0	1925115..1925456	-	113	77463779	-	RSP_0212	-	HNH nuclease
1815	 69.63	0	1925447..1927102	-	551	77463780	-	RSP_0213	-	Phage terminase-like protein large subunit
1816	 65.36	0	1927099..1927404	-	101	77463781	-	RSP_0214	-	phage protein
1817	 67.26	0	1927567..1928904	-	445	77463782	-	RSP_0215	-	hypothetical protein
1818	 62.91	-1	1929125..1929337	-	70	77463783	-	RSP_0216	-	hypothetical protein
1819	 58.89	-2	1929613..1930242	-	209	77463784	-	RSP_6102	-	hypothetical protein
1820	 68.84	0	1930262..1931503	-	413	77463785	int	RSP_0217	-	phage-related integrase
1821	 70.16	0	1932095..1934158	-	687	77463786	mcpM	RSP_0218	-	methyl accepting chemotaxis protein
1822	 61.85	-1	1934696..1934944	+	82	77463787	-	RSP_0219	-	hypothetical protein
1823	 69.52	0	1935301..1935510	+	69	77463788	-	RSP_0220	-	hypothetical protein
1824	 68.52	0	1935581..1936066	+	161	77463789	-	RSP_6103	-	hypothetical protein
1825	 57.25	-2	1936160..1938697	+	845	77463790	-	RSP_0221	-	plasma membrane H+-transporting two-sector ATPase, C subunit
1826	 58.57	-2	1938711..1939982	+	423	77463791	-	RSP_0223	-	hypothetical protein
1827	 56.86	-2	1939988..1942159	+	723	77463792	-	RSP_0224	-	ATP-dependent helicase
1828	 71.60	0	1943574..1944140	-	188	77463793	-	RSP_6104	-	calcium-binding protein
1829	 72.29	0	1944352..1945401	+	349	77463794	-	RSP_0226	-	naringenin-chalcone synthase
1830	 72.22	0	1945398..1945901	+	167	77463795	-	RSP_0227	-	hypothetical protein
1831	 71.86	0	1945888..1947486	+	532	77463796	-	RSP_0229	-	multidrug efflux pump, MF superfamily
1832	 73.69	+1	1947434..1948387	-	317	77463797	hmuS	RSP_0228	-	putative hemin transport protein
1833	 67.86	0	1948474..1950069	-	531	77463798	-	RSP_0230	-	neutral zinc metallopeptidase
1834	 67.65	0	1950102..1950509	-	135	77463799	-	RSP_6105	-	hypothetical protein
1835	 71.93	0	1950647..1951747	-	366	77463800	motB	RSP_0231	-	flagellar MotB protein
1836	 62.07	-1	1951757..1952518	-	253	77463801	motA	RSP_0233	-	flagellar motor protein MotA
1837	 68.82	0	1953030..1954142	-	370	77463802	tlpL	RSP_0234	-	TlpL, putative cytoplasmic chemoreceptor
1838	 76.32	+1	1954543..1954977	-	144	77463803	-	RSP_6106	-	hypothetical protein
1839	 69.18	0	1955064..1956098	+	344	77463804	moaA	RSP_0235	-	molybdenum cofactor biosynthesis protein A
1840	 72.10	0	1956381..1957724	-	447	77463805	-	RSP_0236	-	AgaE protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.