IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1676	 65.92	0	1775529..1777010	-	493	77463641	fliC	RSP_0069	-	flagellar filament protein
1677	 68.48	0	1777249..1778904	+	551	77463642	fliD	RSP_0070	-	flagellar hook-associated protein 2 (filament cap protein)
1678	 68.54	0	1778935..1780164	-	409	77463643	fleQ	RSP_0071	-	sigma-54 dependent trancsriptional regulator
1679	 73.68	+1	1780189..1780986	-	265	77463644	-	RSP_0072	-	invasion protein
1680	 72.11	0	1780993..1782222	-	409	77463645	flgL	RSP_0073	-	flagellar hook-associated protein 3 FlgL
1681	 74.58	+1	1782230..1786321	-	1363	77463646	flgK1	RSP_0074	-	FlgK flagellar hook-associated protein 1
1682	 69.97	0	1786429..1786731	-	100	77463647	flgJ	RSP_6093	-	hypothetical protein
1683	 70.16	0	1786731..1787846	-	371	77463648	flgI	RSP_0076	-	flagellar basal body P-ring protein
1684	 68.91	0	1787843..1788511	-	222	77463649	flgH	RSP_0077	-	flagellar L-ring protein
1685	 65.02	0	1788519..1789307	-	262	77463650	flgG	RSP_0078	-	flagellar distal rod protein
1686	 71.96	0	1789361..1790116	-	251	77463651	flgF	RSP_0079	-	flagellar proximal rod protein FlgF
1687	 69.89	0	1790125..1791396	-	423	77463652	flgE	RSP_0080	-	flagellar hook protein FlgE
1688	 69.64	0	1791421..1792092	-	223	77463653	flgD	RSP_0081	-	flagellar scaffolding protein FlgD
1689	 69.06	0	1792094..1792510	-	138	77463654	flgC	RSP_0082	-	flagellar basal-body rod protein FlgC
1690	 68.22	0	1792510..1792896	-	128	77463655	flgB	RSP_0083	-	flagellar proximal rod protein FlgB
1691	 75.66	+1	1792986..1794152	+	388	77463656	-	RSP_0084	-	hypothetical protein
1692	 68.88	0	1794433..1797099	-	888	77463657	-	RSP_0085	-	PAS/PAC sensor hybrid histidine kinase
1693	 67.05	0	1797096..1797623	-	175	77463658	-	RSP_0086	-	hypothetical protein
1694	 62.40	-1	1797908..1798540	+	210	77463659	-	RSP_0087	-	two component transcriptional regulator, LuxR
1695	 64.27	-1	1798734..1799234	-	166	77463660	-	RSP_0088	-	ycfI, putative structural proteins
1696	 70.45	0	1799406..1800092	+	228	77463661	-	RSP_0089	-	hypothetical protein
1697	 68.03	0	1800089..1801042	+	317	77463662	smoC	RSP_0090	-	operon regulator SmoC
1698	 65.98	0	1801150..1802460	+	436	77463663	smoE	RSP_0091	-	ABC sorbitol/mannitol transporter, periplasmic binding protein
1699	 63.80	-1	1802562..1803434	+	290	77463664	smoF	RSP_0092	-	ABC sorbitol/mannitol transporter, inner membrane subunit
1700	 64.14	-1	1803436..1804266	+	276	77463665	smoG	RSP_0093	-	ABC sorbitol/mannitol transporter, inner membrane subunit
1701	 66.87	0	1804274..1805272	+	332	77463666	smoK	RSP_0094	-	ABC sorbitol/mannitol transporter, ATPase subunit
1702	 69.65	0	1805274..1806044	+	256	77463667	smoS	RSP_0095	-	sorbitol dehydrogenase
1703	 68.90	0	1806098..1807531	+	477	77463668	mtlK	RSP_0096	-	mannitol dehydrogenase
1704	 64.94	0	1808034..1809131	+	365	77463669	smoM	RSP_0097	-	TRAP-T family sorbitol/mannitol  periplasmic binding protein SmoM
1705	 69.74	0	1809282..1811330	-	682	77463670	-	RSP_6094	-	TRAP dicarboxylate family transporter DctM subunit
1706	 63.74	-1	1811327..1811941	-	204	77463671	-	RSP_0099	-	TRAP dicarboxylate family transporter DctQ subunit
1707	 71.06	0	1812328..1812714	+	128	77463672	nuoA	RSP_0100	-	putative NADH dehydrogenase I chain A
1708	 70.06	0	1812711..1813328	+	205	77463673	nuoB	RSP_0101	-	NADH dehydrogenase (ubiquinone), 20 kDa subunit
1709	 68.10	0	1813325..1815067	+	580	77463674	nuoCD	RSP_0102	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1710	 71.94	0	1815064..1815537	+	157	77463675	nuoE	RSP_0103	-	NADH dehydrogenase subunit E
1711	 72.74	0	1815534..1816784	+	416	77463676	nuoF	RSP_0104	-	respiratory-chain NADH dehydrogenase, 51 kDa subunit
1712	 74.91	+1	1816781..1819363	+	860	77463677	nuoG	RSP_0105	-	NADH dehydrogenase subunit G
1713	 69.80	0	1819560..1820516	+	318	77463678	nuoH	RSP_0106	-	putative NADH dehydrogenase I chain H
1714	 66.87	0	1820513..1821007	+	164	77463679	nuoI	RSP_0107	-	NADH dehydrogenase subunit I
1715	 74.95	+1	1821004..1821498	+	164	77463680	nuoJ	RSP_0108	-	NADH dehydrogenase I chain J
1716	 68.61	0	1821495..1821803	+	102	77463681	nuoK	RSP_0109	-	putative NADH dehydrogenase I chain K
1717	 70.04	0	1821805..1823907	+	700	77463682	nuoL	RSP_0110	-	NADH-ubiquinone oxidoreductase, chain 5
1718	 73.81	+1	1825347..1826690	+	447	77463683	nuoN	RSP_0112	-	NADH-ubiquinone oxidoreductase, chain 4
1719	 68.80	0	1826723..1828219	+	498	77463684	-	RSP_0113	-	phospholipase D/transphosphatidylase
1720	 69.86	0	1828216..1828560	+	114	77463685	-	RSP_0114	-	hypothetical protein
1721	 74.06	+1	1828582..1829826	-	414	77463686	-	RSP_0115	-	class I triheme cytochrome c
1722	 66.42	0	1829852..1830259	-	135	77463687	-	RSP_0116	-	hypothetical protein
1723	 68.18	0	1830270..1832843	-	857	77463688	-	RSP_0117	-	cytochrome c oxidase, subunit I
1724	 70.56	0	1832840..1833814	-	324	77463689	-	RSP_0118	-	cytochrome c oxidase, subunit IIC
1725	 68.22	0	1834149..1834919	-	256	77463690	-	RSP_0119	-	PA-phosphatase related phosphoesterase
1726	 63.56	-1	1835172..1835654	-	160	77463691	-	RSP_6095	-	transcriptional activator
1727	 63.64	-1	1835702..1836361	+	219	77463692	-	RSP_6096	-	LuxR family transcriptional regulator
1728	 66.95	0	1836472..1837173	+	233	77463693	cerR	RSP_0122	-	LuxR family transcriptional regulator
1729	 53.46	-2	1837195..1837353	+	52	77463694	cerA	RSP_6213	-	community escape response protein
1730	 63.98	-1	1837350..1837982	+	210	77463695	cerI	RSP_0123	-	autoinducer synthesis protein
1731	 72.16	0	1838097..1838369	+	90	77463696	-	RSP_0124	-	hypothetical protein
1732	 67.28	0	1838690..1840312	+	540	77463697	mdoG	RSP_0125	-	glucan biosynthesis protein G
1733	 68.66	0	1840312..1840512	+	66	77463698	-	RSP_0126	-	hypothetical protein
1734	 68.12	0	1840516..1842303	+	595	77463699	opgH	RSP_0127	-	glucosyltransferase MdoH
1735	 66.08	0	1842296..1843495	+	399	77463700	opgC	RSP_0128	-	OpgC protein
1736	 70.15	0	1844020..1845081	+	353	77463701	metN	RSP_0129	-	ABC D-methionine uptake transporter, ATPase subunit
1737	 69.63	0	1845071..1845745	+	224	77463702	metI	RSP_0130	-	ABC D-methionine uptake transporter, inner membrane subunit
1738	 64.35	-1	1845774..1846550	+	258	77463703	metQ	RSP_0132	-	ABC D-methionine uptake transporter, substrate-binding protein
1739	 67.14	0	1846786..1848276	+	496	77463704	-	RSP_0133	-	NahC family Na(+)/H(+) antiporter
1740	 71.58	0	1849400..1849684	+	94	77463705	-	RSP_0134	-	hypothetical protein
1741	 68.33	0	1849677..1851116	+	479	77463706	-	RSP_0135	-	hypothetical protein
1742	 67.15	0	1851235..1852068	+	277	77463707	-	RSP_0136	-	putative integrase for prophage CP-933U
1743	 58.62	-2	1852329..1853036	-	235	77463708	-	RSP_0137	-	hypothetical protein
1744	 65.53	0	1853174..1853524	-	116	77463709	-	RSP_0138	-	hypothetical protein
1745	 63.41	-1	1854206..1854604	+	132	77463710	rpsF	RSP_0139	-	30S ribosomal protein S6
1746	 64.04	-1	1854625..1854852	+	75	77463711	rpsR	RSP_0140	-	30S ribosomal protein S18
1747	 66.14	0	1854865..1855434	+	189	77463712	rplI	RSP_0141	-	50S ribosomal protein L9
1748	 64.72	0	1855758..1857092	-	444	77463713	tig	RSP_0142	-	trigger factor
1749	 72.82	0	1857400..1857870	+	156	77463714	-	RSP_6097	-	hypothetical protein
1750	 63.42	-1	1859643..1859981	+	112	77463715	glnB	RSP_0146	-	nitrogen regulatory protein P-II
1751	 63.19	-1	1860063..1861472	+	469	77463716	glnA	RSP_0147	-	L-glutamine synthetase
1752	 69.42	0	1861665..1862717	-	350	77463717	-	RSP_0148	-	Signal transduction histidine kinase
1753	 59.82	-2	1862714..1863151	-	145	77463718	-	RSP_0149	-	CheY-like receiver protein
1754	 67.81	0	1863148..1864632	-	494	77463719	-	RSP_0150	-	multi-sensor signal transduction histidine kinase
1755	 69.21	0	1864928..1866067	+	379	77463720	-	RSP_0152	-	P-loop ATPase
1756	 72.31	0	1866064..1867374	+	436	77463721	-	RSP_0151	-	hypothetical protein
1757	 69.62	0	1867577..1868254	-	225	77463722	-	RSP_0153	-	hypothetical protein
1758	 71.59	0	1868401..1869273	-	290	77463723	-	RSP_0154	-	3-hydroxyisobutyrate dehydrogenase
1759	 71.80	0	1869270..1870301	-	343	77463724	-	RSP_0155	-	enoyl-CoA hydratase
1760	 68.33	0	1870298..1871437	-	379	77463725	-	RSP_0156	-	Acyl-CoA dehydrogenase
1761	 70.41	0	1871561..1871854	-	97	77463726	-	RSP_6098	-	hypothetical protein
1762	 67.78	0	1872062..1872961	-	299	77463727	-	RSP_0157	-	Beta-mannanase
1763	 69.64	0	1872975..1874858	-	627	77463728	-	RSP_0158	-	cellulose synthase-like protein
1764	 70.80	0	1874842..1875834	-	330	77463729	galE-2	RSP_0159	-	UDP-galactose 4-epimerase
1765	 66.28	0	1875827..1876864	-	345	77463730	-	RSP_0160	-	NAD-dependent epimerase/dehydratase family protein
1766	 66.39	0	1877726..1878826	+	366	77463731	-	RSP_0161	-	spermidine/putrescine-binding periplasmic protein
1767	 66.67	0	1878943..1879134	+	63	77463732	-	RSP_0162	-	hypothetical protein
1768	 70.85	0	1879205..1880878	-	557	77463733	-	RSP_0163	-	putative iron(III) ABC transporter, fused inner membrane subunits
1769	 61.96	-1	1881031..1881285	-	84	77463734	-	RSP_0164	-	hypothetical protein
1770	 67.59	0	1881422..1881637	+	71	77463735	-	RSP_0165	-	hypothetical protein
1771	 65.41	0	1882044..1882361	-	105	77463736	dksA	RSP_0166	-	DnaK suppressor protein
1772	 71.53	0	1882687..1883118	+	143	77463737	-	RSP_0167	-	hypothetical protein
1773	 72.74	0	1883377..1884348	-	323	77463738	-	RSP_6099	-	flagellar switch protein FliM
1774	 68.79	0	1884473..1887157	-	894	77463739	-	RSP_0169	-	Na+/solute symporter
1775	 74.23	+1	1887157..1887447	-	96	77463740	-	RSP_0170	-	hypothetical protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.