version 1.0
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609 3022 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1609 71.95 0 1710871..1711836 + 321 77463574 - RSP_0008 - drug/metabolite exporter (DME) family protein 1610 67.01 0 1711869..1712738 + 289 77463575 - RSP_0009 - hypothetical protein 1611 63.73 -1 1712767..1713684 + 305 77463576 - RSP_0010 - homoserine O-succinyltransferase 1612 70.65 0 1713674..1714627 + 317 77463577 - RSP_0011 - hydrolase or acyltransferase (alpha/beta hydrolase) 1613 67.23 0 1714668..1715552 + 294 77463578 - RSP_0013 - hypothetical protein 1614 70.39 0 1715549..1716166 + 205 77463579 - RSP_0014 - TetR family transcriptional regulator 1615 68.40 0 1716318..1717415 - 365 77463580 - RSP_0015 - ABC spermidine/putrescine transporter, ATPase subunit 1616 65.43 0 1717412..1718218 - 268 77463581 - RSP_0016 - ABC spermidine/putrescine transporter, inner membrane subunit 1617 63.06 -1 1718215..1719102 - 295 77463582 - RSP_0017 - ABC spermidine/putrescine transporter, inner membrane subunit 1618 72.29 0 1719530..1720933 - 467 77463583 - RSP_0018 - GntR family transcriptional regulator 1619 71.49 0 1721018..1721245 + 75 77463584 - RSP_0019 - hypothetical protein 1620 69.35 0 1721336..1722043 - 235 77463585 - RSP_0020 - hypothetical protein 1621 66.87 0 1722384..1722866 - 160 77463586 rpsI RSP_0021 - 30S ribosomal protein S9 1622 63.01 -1 1722870..1723334 - 154 77463587 rplM RSP_0022 - 50S ribosomal protein L13 1623 74.12 +1 1723539..1724330 - 263 77463588 - RSP_6083 - hypothetical protein 1624 64.98 0 1724906..1725439 + 177 77463589 rfbC RSP_0024 - dTDP-4-dehydrorhamnose 3,5-epimerase 1625 68.89 0 1725765..1727114 - 449 77463590 - RSP_0025 - NAD(P)-dependent oxidoreductase 1626 66.10 0 1727111..1728166 - 351 77463591 - RSP_0026 - epimerase/dehydratase 1627 76.14 +1 1728364..1729155 - 263 77463592 - RSP_0027 - hypothetical protein 1628 74.47 +1 1729383..1730381 + 332 77463593 - RSP_0028 - short chain dehydrogenase 1629 67.13 0 1730543..1732042 + 499 77463594 - RSP_0029 - acetyl-CoA hydrolase/transferase family protein 1630 69.18 0 1732315..1734816 - 833 77463595 - RSP_0030 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1631 67.82 0 1734863..1735036 - 57 77463596 - RSP_6084 - hypothetical protein 1632 74.36 +1 1735288..1736106 + 272 77463597 - RSP_6085 - hypothetical protein 1633 68.06 0 1736242..1736961 - 239 77463598 fliA RSP_0032 - sigma factor FliA (sigma-28 group, flagellar) 1634 77.02 +1 1736958..1737971 - 337 77463599 - RSP_0033 - hypothetical protein 1635 70.50 0 1737975..1740089 - 704 77463600 flhA RSP_0034 - flagellar biosynthesis protein, FlhA 1636 71.14 0 1740409..1740810 + 133 77463601 - RSP_0035 - hypothetical protein 1637 76.98 +1 1740807..1741892 + 361 77463602 - RSP_6086 - hypothetical protein 1638 77.28 +2 1741889..1742557 + 222 77463603 flgA RSP_0036 - flagellar basal-body P-ring formation protein FlgA 1639 65.08 0 1742579..1742893 + 104 77463604 flgM RSP_0037 - putative FlgM, negative regulator of flagellin synthesis 1640 72.58 0 1742922..1743293 + 123 77463605 - RSP_6087 - hypothetical protein 1641 76.78 +1 1743312..1743944 - 210 77463606 - RSP_6088 - Sel1 repeat-containing protein 1642 69.54 0 1743941..1744393 - 150 77463607 - RSP_6089 - hypothetical protein 1643 73.46 +1 1744503..1744988 + 161 77463608 - RSP_6090 - hypothetical protein 1644 76.19 +1 1745042..1745230 + 62 77463609 - RSP_0038 - hypothetical protein 1645 78.93 +2 1745558..1745875 - 105 77463610 - RSP_0039 - hypothetical protein 1646 67.19 0 1745872..1746252 - 126 77463611 fliS RSP_0040 - putative flagellar protein FliS 1647 76.98 +1 1746536..1747117 - 193 77463612 - RSP_0041 - hypothetical protein 1648 73.42 +1 1747255..1750542 - 1095 77463613 cheA3 RSP_0042 - chemotaxis histidine protein kinase, CheA3 1649 66.17 0 1750569..1750973 - 134 77463614 cheY6 RSP_0043 - chemotaxis response regulator, CheY6 1650 73.36 +1 1751177..1752880 - 567 77463615 tlpT RSP_0044 - putative cytoplasmic chemoreceptor, TlpT 1651 74.06 +1 1752877..1753593 - 238 77463616 slp RSP_0045 - Slp 1652 70.20 0 1753606..1754115 - 169 77463617 cheW4 RSP_0046 - CheW protein 1653 74.59 +1 1754134..1755231 - 365 77463618 cheB2 RSP_0047 - chemotaxis methylesterase, CheB2 1654 70.00 0 1755231..1756040 - 269 77463619 cheR3 RSP_0048 - MCP methyltransferase, CheR-type 1655 71.42 0 1756037..1757236 - 399 77463620 cheA4 RSP_0049 - chemotaxis histidine protein kinase, CheA4 1656 57.52 -2 1757381..1757686 - 101 77463621 - RSP_6091 - hypothetical protein 1657 72.56 0 1758112..1759248 + 378 77463622 torF RSP_0051 - Torf protein 1658 70.68 0 1759262..1759585 + 107 77463623 fliE RSP_0052 - flagellar protein FliE 1659 72.80 0 1759605..1761317 + 570 77463624 fliF1 RSP_0053 - flagellar FliF M-ring protein 1660 67.84 0 1761319..1762341 + 340 77463625 fliG RSP_0054 - flagellar motor switch protein FliG 1661 77.82 +2 1762345..1763169 + 274 77463626 fliH RSP_0055 - flagellar protein FliH 1662 71.93 0 1763166..1764494 + 442 77463627 fliI RSP_0056 - flagellum-specific ATPase FliI 1663 78.43 +2 1764496..1764903 + 135 77463628 fliJ RSP_0057 - flagellar protein FliJ 1664 76.90 +1 1764958..1767057 + 699 77463629 fliK RSP_0058 - FliK, flagellar hook-length control protein 1665 70.33 0 1767068..1767640 + 190 77463630 fliL RSP_0059 - flagellar biosynthesis protein, FliL 1666 66.05 0 1767644..1768615 + 323 77463631 fliM RSP_0060 - flagellar switch protein FliM 1667 68.69 0 1768772..1769068 + 98 77463632 fliN RSP_0061 - flagellar motor switch FliN protein 1668 70.93 0 1769200..1769457 + 85 77463633 fliO RSP_0062 - flagellar protein FliO 1669 68.32 0 1769454..1770359 + 301 77463634 fliP RSP_0063 - flagellar biosynthesis protein FliP 1670 62.55 -1 1770359..1770625 + 88 77463635 fliQ RSP_0064 - flagellar protein FliQ 1671 71.85 0 1770625..1771434 + 269 77463636 fliR RSP_0065 - flagellar protein FliR 1672 69.64 0 1771421..1772563 + 380 77463637 flhB RSP_0066 - flagellar protein FlhB 1673 73.33 +1 1772617..1773336 + 239 77463638 - RSP_0067 - hypothetical protein 1674 75.93 +1 1773344..1774012 + 222 77463639 - RSP_6092 - hypothetical protein 1675 69.89 0 1774019..1775353 - 444 77463640 rpoN2 RSP_0068 - sigma-54 factor (RpoN2) 1676 65.92 0 1775529..1777010 - 493 77463641 fliC RSP_0069 - flagellar filament protein 1677 68.48 0 1777249..1778904 + 551 77463642 fliD RSP_0070 - flagellar hook-associated protein 2 (filament cap protein) 1678 68.54 0 1778935..1780164 - 409 77463643 fleQ RSP_0071 - sigma-54 dependent trancsriptional regulator 1679 73.68 +1 1780189..1780986 - 265 77463644 - RSP_0072 - invasion protein 1680 72.11 0 1780993..1782222 - 409 77463645 flgL RSP_0073 - flagellar hook-associated protein 3 FlgL 1681 74.58 +1 1782230..1786321 - 1363 77463646 flgK1 RSP_0074 - FlgK flagellar hook-associated protein 1 1682 69.97 0 1786429..1786731 - 100 77463647 flgJ RSP_6093 - hypothetical protein 1683 70.16 0 1786731..1787846 - 371 77463648 flgI RSP_0076 - flagellar basal body P-ring protein 1684 68.91 0 1787843..1788511 - 222 77463649 flgH RSP_0077 - flagellar L-ring protein 1685 65.02 0 1788519..1789307 - 262 77463650 flgG RSP_0078 - flagellar distal rod protein 1686 71.96 0 1789361..1790116 - 251 77463651 flgF RSP_0079 - flagellar proximal rod protein FlgF 1687 69.89 0 1790125..1791396 - 423 77463652 flgE RSP_0080 - flagellar hook protein FlgE 1688 69.64 0 1791421..1792092 - 223 77463653 flgD RSP_0081 - flagellar scaffolding protein FlgD 1689 69.06 0 1792094..1792510 - 138 77463654 flgC RSP_0082 - flagellar basal-body rod protein FlgC 1690 68.22 0 1792510..1792896 - 128 77463655 flgB RSP_0083 - flagellar proximal rod protein FlgB 1691 75.66 +1 1792986..1794152 + 388 77463656 - RSP_0084 - hypothetical protein 1692 68.88 0 1794433..1797099 - 888 77463657 - RSP_0085 - PAS/PAC sensor hybrid histidine kinase 1693 67.05 0 1797096..1797623 - 175 77463658 - RSP_0086 - hypothetical protein 1694 62.40 -1 1797908..1798540 + 210 77463659 - RSP_0087 - two component transcriptional regulator, LuxR 1695 64.27 -1 1798734..1799234 - 166 77463660 - RSP_0088 - ycfI, putative structural proteins 1696 70.45 0 1799406..1800092 + 228 77463661 - RSP_0089 - hypothetical protein 1697 68.03 0 1800089..1801042 + 317 77463662 smoC RSP_0090 - operon regulator SmoC 1698 65.98 0 1801150..1802460 + 436 77463663 smoE RSP_0091 - ABC sorbitol/mannitol transporter, periplasmic binding protein 1699 63.80 -1 1802562..1803434 + 290 77463664 smoF RSP_0092 - ABC sorbitol/mannitol transporter, inner membrane subunit 1700 64.14 -1 1803436..1804266 + 276 77463665 smoG RSP_0093 - ABC sorbitol/mannitol transporter, inner membrane subunit 1701 66.87 0 1804274..1805272 + 332 77463666 smoK RSP_0094 - ABC sorbitol/mannitol transporter, ATPase subunit 1702 69.65 0 1805274..1806044 + 256 77463667 smoS RSP_0095 - sorbitol dehydrogenase 1703 68.90 0 1806098..1807531 + 477 77463668 mtlK RSP_0096 - mannitol dehydrogenase 1704 64.94 0 1808034..1809131 + 365 77463669 smoM RSP_0097 - TRAP-T family sorbitol/mannitol periplasmic binding protein SmoM 1705 69.74 0 1809282..1811330 - 682 77463670 - RSP_6094 - TRAP dicarboxylate family transporter DctM subunit 1706 63.74 -1 1811327..1811941 - 204 77463671 - RSP_0099 - TRAP dicarboxylate family transporter DctQ subunit 1707 71.06 0 1812328..1812714 + 128 77463672 nuoA RSP_0100 - putative NADH dehydrogenase I chain A 1708 70.06 0 1812711..1813328 + 205 77463673 nuoB RSP_0101 - NADH dehydrogenase (ubiquinone), 20 kDa subunit 68.78 MEAN 4.15 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0