IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1599	 45.17	-2	1697390..1697896	-	168	77463564	-	RSP_3001	-	endonuclease
1600	 46.98	-2	1697978..1698358	-	126	77463565	-	RSP_6248	-	putative class I holin
1601	 51.40	-2	1698327..1698719	-	130	77463566	-	RSP_6249	-	hypothetical protein
1602	 46.30	-2	1699690..1700622	-	310	77463567	-	RSP_6250	-	hypothetical protein
1603	 56.06	-2	1704125..1704520	-	131	77463568	spbB	RSP_0002	-	histone-like nucleoid-structuring protein H-NS
1604	 51.24	-2	1704748..1706277	-	509	77463569	-	RSP_0003	-	putative site-specific recombinase
1605	 61.86	-1	1706240..1706530	-	96	77463570	-	RSP_0004	-	hypothetical protein
1606	 67.05	0	1706705..1708261	+	518	77463571	guaA	RSP_0005	-	bifunctional GMP synthase/glutamine amidotransferase protein
1607	 68.24	0	1708728..1709615	+	295	77463572	-	RSP_0006	-	DMT family permease
1608	 66.22	0	1709694..1710818	+	374	77463573	-	RSP_0007	-	putative outer membrane protein
1609	 71.95	0	1710871..1711836	+	321	77463574	-	RSP_0008	-	drug/metabolite exporter (DME) family protein
1610	 67.01	0	1711869..1712738	+	289	77463575	-	RSP_0009	-	hypothetical protein
1611	 63.73	-1	1712767..1713684	+	305	77463576	-	RSP_0010	-	homoserine O-succinyltransferase
1612	 70.65	0	1713674..1714627	+	317	77463577	-	RSP_0011	-	hydrolase or acyltransferase (alpha/beta hydrolase)
1613	 67.23	0	1714668..1715552	+	294	77463578	-	RSP_0013	-	hypothetical protein
1614	 70.39	0	1715549..1716166	+	205	77463579	-	RSP_0014	-	TetR family transcriptional regulator
1615	 68.40	0	1716318..1717415	-	365	77463580	-	RSP_0015	-	ABC spermidine/putrescine transporter, ATPase subunit
1616	 65.43	0	1717412..1718218	-	268	77463581	-	RSP_0016	-	ABC spermidine/putrescine transporter, inner membrane subunit
1617	 63.06	-1	1718215..1719102	-	295	77463582	-	RSP_0017	-	ABC spermidine/putrescine transporter, inner membrane subunit
1618	 72.29	0	1719530..1720933	-	467	77463583	-	RSP_0018	-	GntR family transcriptional regulator
1619	 71.49	0	1721018..1721245	+	75	77463584	-	RSP_0019	-	hypothetical protein
1620	 69.35	0	1721336..1722043	-	235	77463585	-	RSP_0020	-	hypothetical protein
1621	 66.87	0	1722384..1722866	-	160	77463586	rpsI	RSP_0021	-	30S ribosomal protein S9
1622	 63.01	-1	1722870..1723334	-	154	77463587	rplM	RSP_0022	-	50S ribosomal protein L13
1623	 74.12	+1	1723539..1724330	-	263	77463588	-	RSP_6083	-	hypothetical protein
1624	 64.98	0	1724906..1725439	+	177	77463589	rfbC	RSP_0024	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1625	 68.89	0	1725765..1727114	-	449	77463590	-	RSP_0025	-	NAD(P)-dependent oxidoreductase
1626	 66.10	0	1727111..1728166	-	351	77463591	-	RSP_0026	-	epimerase/dehydratase
1627	 76.14	+1	1728364..1729155	-	263	77463592	-	RSP_0027	-	hypothetical protein
1628	 74.47	+1	1729383..1730381	+	332	77463593	-	RSP_0028	-	short chain dehydrogenase
1629	 67.13	0	1730543..1732042	+	499	77463594	-	RSP_0029	-	acetyl-CoA hydrolase/transferase family protein
1630	 69.18	0	1732315..1734816	-	833	77463595	-	RSP_0030	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1631	 67.82	0	1734863..1735036	-	57	77463596	-	RSP_6084	-	hypothetical protein
1632	 74.36	+1	1735288..1736106	+	272	77463597	-	RSP_6085	-	hypothetical protein
1633	 68.06	0	1736242..1736961	-	239	77463598	fliA	RSP_0032	-	sigma factor FliA (sigma-28 group, flagellar)
1634	 77.02	+1	1736958..1737971	-	337	77463599	-	RSP_0033	-	hypothetical protein
1635	 70.50	0	1737975..1740089	-	704	77463600	flhA	RSP_0034	-	flagellar biosynthesis protein, FlhA
1636	 71.14	0	1740409..1740810	+	133	77463601	-	RSP_0035	-	hypothetical protein
1637	 76.98	+1	1740807..1741892	+	361	77463602	-	RSP_6086	-	hypothetical protein
1638	 77.28	+2	1741889..1742557	+	222	77463603	flgA	RSP_0036	-	flagellar basal-body P-ring formation protein FlgA
1639	 65.08	0	1742579..1742893	+	104	77463604	flgM	RSP_0037	-	putative FlgM, negative regulator of flagellin synthesis
1640	 72.58	0	1742922..1743293	+	123	77463605	-	RSP_6087	-	hypothetical protein
1641	 76.78	+1	1743312..1743944	-	210	77463606	-	RSP_6088	-	Sel1 repeat-containing protein
1642	 69.54	0	1743941..1744393	-	150	77463607	-	RSP_6089	-	hypothetical protein
1643	 73.46	+1	1744503..1744988	+	161	77463608	-	RSP_6090	-	hypothetical protein
1644	 76.19	+1	1745042..1745230	+	62	77463609	-	RSP_0038	-	hypothetical protein
1645	 78.93	+2	1745558..1745875	-	105	77463610	-	RSP_0039	-	hypothetical protein
1646	 67.19	0	1745872..1746252	-	126	77463611	fliS	RSP_0040	-	putative flagellar protein FliS
1647	 76.98	+1	1746536..1747117	-	193	77463612	-	RSP_0041	-	hypothetical protein
1648	 73.42	+1	1747255..1750542	-	1095	77463613	cheA3	RSP_0042	-	chemotaxis histidine protein kinase, CheA3
1649	 66.17	0	1750569..1750973	-	134	77463614	cheY6	RSP_0043	-	chemotaxis response regulator, CheY6
1650	 73.36	+1	1751177..1752880	-	567	77463615	tlpT	RSP_0044	-	putative cytoplasmic chemoreceptor, TlpT
1651	 74.06	+1	1752877..1753593	-	238	77463616	slp	RSP_0045	-	Slp
1652	 70.20	0	1753606..1754115	-	169	77463617	cheW4	RSP_0046	-	CheW protein
1653	 74.59	+1	1754134..1755231	-	365	77463618	cheB2	RSP_0047	-	chemotaxis methylesterase, CheB2
1654	 70.00	0	1755231..1756040	-	269	77463619	cheR3	RSP_0048	-	MCP methyltransferase, CheR-type
1655	 71.42	0	1756037..1757236	-	399	77463620	cheA4	RSP_0049	-	chemotaxis histidine protein kinase, CheA4
1656	 57.52	-2	1757381..1757686	-	101	77463621	-	RSP_6091	-	hypothetical protein
1657	 72.56	0	1758112..1759248	+	378	77463622	torF	RSP_0051	-	Torf protein
1658	 70.68	0	1759262..1759585	+	107	77463623	fliE	RSP_0052	-	flagellar protein FliE
1659	 72.80	0	1759605..1761317	+	570	77463624	fliF1	RSP_0053	-	flagellar FliF M-ring protein
1660	 67.84	0	1761319..1762341	+	340	77463625	fliG	RSP_0054	-	flagellar motor switch protein FliG
1661	 77.82	+2	1762345..1763169	+	274	77463626	fliH	RSP_0055	-	flagellar protein FliH
1662	 71.93	0	1763166..1764494	+	442	77463627	fliI	RSP_0056	-	flagellum-specific ATPase FliI
1663	 78.43	+2	1764496..1764903	+	135	77463628	fliJ	RSP_0057	-	flagellar protein FliJ
1664	 76.90	+1	1764958..1767057	+	699	77463629	fliK	RSP_0058	-	FliK, flagellar hook-length control protein
1665	 70.33	0	1767068..1767640	+	190	77463630	fliL	RSP_0059	-	flagellar biosynthesis protein, FliL
1666	 66.05	0	1767644..1768615	+	323	77463631	fliM	RSP_0060	-	flagellar switch protein FliM
1667	 68.69	0	1768772..1769068	+	98	77463632	fliN	RSP_0061	-	flagellar motor switch FliN protein
1668	 70.93	0	1769200..1769457	+	85	77463633	fliO	RSP_0062	-	flagellar protein FliO
1669	 68.32	0	1769454..1770359	+	301	77463634	fliP	RSP_0063	-	flagellar biosynthesis protein FliP
1670	 62.55	-1	1770359..1770625	+	88	77463635	fliQ	RSP_0064	-	flagellar protein FliQ
1671	 71.85	0	1770625..1771434	+	269	77463636	fliR	RSP_0065	-	flagellar protein FliR
1672	 69.64	0	1771421..1772563	+	380	77463637	flhB	RSP_0066	-	flagellar protein FlhB
1673	 73.33	+1	1772617..1773336	+	239	77463638	-	RSP_0067	-	hypothetical protein
1674	 75.93	+1	1773344..1774012	+	222	77463639	-	RSP_6092	-	hypothetical protein
1675	 69.89	0	1774019..1775353	-	444	77463640	rpoN2	RSP_0068	-	sigma-54 factor (RpoN2)
1676	 65.92	0	1775529..1777010	-	493	77463641	fliC	RSP_0069	-	flagellar filament protein
1677	 68.48	0	1777249..1778904	+	551	77463642	fliD	RSP_0070	-	flagellar hook-associated protein 2 (filament cap protein)
1678	 68.54	0	1778935..1780164	-	409	77463643	fleQ	RSP_0071	-	sigma-54 dependent trancsriptional regulator
1679	 73.68	+1	1780189..1780986	-	265	77463644	-	RSP_0072	-	invasion protein
1680	 72.11	0	1780993..1782222	-	409	77463645	flgL	RSP_0073	-	flagellar hook-associated protein 3 FlgL
1681	 74.58	+1	1782230..1786321	-	1363	77463646	flgK1	RSP_0074	-	FlgK flagellar hook-associated protein 1
1682	 69.97	0	1786429..1786731	-	100	77463647	flgJ	RSP_6093	-	hypothetical protein
1683	 70.16	0	1786731..1787846	-	371	77463648	flgI	RSP_0076	-	flagellar basal body P-ring protein
1684	 68.91	0	1787843..1788511	-	222	77463649	flgH	RSP_0077	-	flagellar L-ring protein
1685	 65.02	0	1788519..1789307	-	262	77463650	flgG	RSP_0078	-	flagellar distal rod protein
1686	 71.96	0	1789361..1790116	-	251	77463651	flgF	RSP_0079	-	flagellar proximal rod protein FlgF
1687	 69.89	0	1790125..1791396	-	423	77463652	flgE	RSP_0080	-	flagellar hook protein FlgE
1688	 69.64	0	1791421..1792092	-	223	77463653	flgD	RSP_0081	-	flagellar scaffolding protein FlgD
1689	 69.06	0	1792094..1792510	-	138	77463654	flgC	RSP_0082	-	flagellar basal-body rod protein FlgC
1690	 68.22	0	1792510..1792896	-	128	77463655	flgB	RSP_0083	-	flagellar proximal rod protein FlgB
1691	 75.66	+1	1792986..1794152	+	388	77463656	-	RSP_0084	-	hypothetical protein
1692	 68.88	0	1794433..1797099	-	888	77463657	-	RSP_0085	-	PAS/PAC sensor hybrid histidine kinase
1693	 67.05	0	1797096..1797623	-	175	77463658	-	RSP_0086	-	hypothetical protein
1694	 62.40	-1	1797908..1798540	+	210	77463659	-	RSP_0087	-	two component transcriptional regulator, LuxR
1695	 64.27	-1	1798734..1799234	-	166	77463660	-	RSP_0088	-	ycfI, putative structural proteins
1696	 70.45	0	1799406..1800092	+	228	77463661	-	RSP_0089	-	hypothetical protein
1697	 68.03	0	1800089..1801042	+	317	77463662	smoC	RSP_0090	-	operon regulator SmoC
1698	 65.98	0	1801150..1802460	+	436	77463663	smoE	RSP_0091	-	ABC sorbitol/mannitol transporter, periplasmic binding protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.