IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1569	 62.16	-1	1663458..1664234	-	258	77463534	-	RSP_2976	-	hypothetical protein
1570	 66.67	0	1664604..1665731	-	375	77463535	prfB	RSP_2977	-	peptide chain release factor 2
1571	 67.45	0	1665840..1668389	-	849	77463536	mrcA	RSP_2978	-	penicillin-binding protein 1A (PBP-1a)
1572	 73.71	+1	1668481..1669716	-	411	77463537	amiC	RSP_2979	-	N-acetylmuramoyl-L-alanine amidase
1573	 69.97	0	1669765..1670916	-	383	77463538	aspAT	RSP_2980	-	aminotransferase
1574	 68.01	0	1671084..1671827	+	247	77463539	-	RSP_2981	-	putative protein-disulfide isomerase
1575	 67.20	0	1672163..1673296	-	377	77463540	ispG	RSP_2982	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1576	 70.74	0	1673427..1674554	-	375	77463541	-	RSP_2983	-	hypothetical protein
1577	 65.36	0	1674752..1675975	-	407	77463542	hemA	RSP_2984	-	5-aminolevulinate synthase
1578	 72.63	0	1676110..1676679	-	189	77463543	-	RSP_2985	-	hypothetical protein
1579	 69.36	0	1676870..1678282	+	470	77463544	-	RSP_2986	-	hypothetical protein
1580	 70.72	0	1678279..1678722	+	147	77463545	-	RSP_2987	-	acetyltransferase
1581	 72.81	0	1679197..1679961	-	254	77463546	-	RSP_2988	-	Pirin-related protein
1582	 41.52	-2	1680129..1680470	+	113	77463547	-	RSP_2989	-	hypothetical protein
1583	 50.35	-2	1680503..1683964	-	1153	77463548	-	RSP_2990	-	hypothetical protein
1584	 49.55	-2	1684120..1684452	-	110	77463549	-	RSP_2991	-	hypothetical protein
1585	 48.53	-2	1684595..1685206	-	203	77463550	-	RSP_2992	-	hypothetical protein
1586	 45.58	-2	1685278..1685922	-	214	77463551	-	RSP_2993	-	hypothetical protein
1587	 53.53	-2	1685926..1688079	-	717	77463552	-	RSP_2994	-	hypothetical protein
1588	 46.71	-2	1689113..1689598	-	161	77463553	-	RSP_6243	-	putative endonuclease
1589	 46.51	-2	1690255..1690626	-	123	77463554	-	RSP_6244	-	hypothetical protein
1590	 49.17	-2	1690672..1691094	-	140	77463555	-	RSP_6245	-	hypothetical protein
1591	 45.60	-2	1691095..1691412	-	105	77463556	-	RSP_6246	-	bacteriophage head-tail adaptor
1592	 43.57	-2	1691414..1691755	-	113	77463557	-	RSP_6247	-	Phage-related protein, DNA packing
1593	 53.60	-2	1691779..1692888	-	369	77463558	-	RSP_2995	-	phage major capsid protein, gp36
1594	 45.52	-2	1692961..1693485	-	174	77463559	-	RSP_2996	-	prohead peptidase
1595	 49.96	-2	1693482..1694708	-	408	77463560	-	RSP_2997	-	putative head portal protein
1596	 49.34	-2	1694748..1696334	-	528	77463561	-	RSP_2998	-	putative terminase large subunit
1597	 46.26	-2	1696321..1696761	-	146	77463562	-	RSP_2999	-	hypothetical protein
1598	 43.91	-2	1697025..1697336	-	103	77463563	-	RSP_3000	-	hypothetical protein
1599	 45.17	-2	1697390..1697896	-	168	77463564	-	RSP_3001	-	endonuclease
1600	 46.98	-2	1697978..1698358	-	126	77463565	-	RSP_6248	-	putative class I holin
1601	 51.40	-2	1698327..1698719	-	130	77463566	-	RSP_6249	-	hypothetical protein
1602	 46.30	-2	1699690..1700622	-	310	77463567	-	RSP_6250	-	hypothetical protein
1603	 56.06	-2	1704125..1704520	-	131	77463568	spbB	RSP_0002	-	histone-like nucleoid-structuring protein H-NS
1604	 51.24	-2	1704748..1706277	-	509	77463569	-	RSP_0003	-	putative site-specific recombinase
1605	 61.86	-1	1706240..1706530	-	96	77463570	-	RSP_0004	-	hypothetical protein
1606	 67.05	0	1706705..1708261	+	518	77463571	guaA	RSP_0005	-	bifunctional GMP synthase/glutamine amidotransferase protein
1607	 68.24	0	1708728..1709615	+	295	77463572	-	RSP_0006	-	DMT family permease
1608	 66.22	0	1709694..1710818	+	374	77463573	-	RSP_0007	-	putative outer membrane protein
1609	 71.95	0	1710871..1711836	+	321	77463574	-	RSP_0008	-	drug/metabolite exporter (DME) family protein
1610	 67.01	0	1711869..1712738	+	289	77463575	-	RSP_0009	-	hypothetical protein
1611	 63.73	-1	1712767..1713684	+	305	77463576	-	RSP_0010	-	homoserine O-succinyltransferase
1612	 70.65	0	1713674..1714627	+	317	77463577	-	RSP_0011	-	hydrolase or acyltransferase (alpha/beta hydrolase)
1613	 67.23	0	1714668..1715552	+	294	77463578	-	RSP_0013	-	hypothetical protein
1614	 70.39	0	1715549..1716166	+	205	77463579	-	RSP_0014	-	TetR family transcriptional regulator
1615	 68.40	0	1716318..1717415	-	365	77463580	-	RSP_0015	-	ABC spermidine/putrescine transporter, ATPase subunit
1616	 65.43	0	1717412..1718218	-	268	77463581	-	RSP_0016	-	ABC spermidine/putrescine transporter, inner membrane subunit
1617	 63.06	-1	1718215..1719102	-	295	77463582	-	RSP_0017	-	ABC spermidine/putrescine transporter, inner membrane subunit
1618	 72.29	0	1719530..1720933	-	467	77463583	-	RSP_0018	-	GntR family transcriptional regulator
1619	 71.49	0	1721018..1721245	+	75	77463584	-	RSP_0019	-	hypothetical protein
1620	 69.35	0	1721336..1722043	-	235	77463585	-	RSP_0020	-	hypothetical protein
1621	 66.87	0	1722384..1722866	-	160	77463586	rpsI	RSP_0021	-	30S ribosomal protein S9
1622	 63.01	-1	1722870..1723334	-	154	77463587	rplM	RSP_0022	-	50S ribosomal protein L13
1623	 74.12	+1	1723539..1724330	-	263	77463588	-	RSP_6083	-	hypothetical protein
1624	 64.98	0	1724906..1725439	+	177	77463589	rfbC	RSP_0024	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1625	 68.89	0	1725765..1727114	-	449	77463590	-	RSP_0025	-	NAD(P)-dependent oxidoreductase
1626	 66.10	0	1727111..1728166	-	351	77463591	-	RSP_0026	-	epimerase/dehydratase
1627	 76.14	+1	1728364..1729155	-	263	77463592	-	RSP_0027	-	hypothetical protein
1628	 74.47	+1	1729383..1730381	+	332	77463593	-	RSP_0028	-	short chain dehydrogenase
1629	 67.13	0	1730543..1732042	+	499	77463594	-	RSP_0029	-	acetyl-CoA hydrolase/transferase family protein
1630	 69.18	0	1732315..1734816	-	833	77463595	-	RSP_0030	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1631	 67.82	0	1734863..1735036	-	57	77463596	-	RSP_6084	-	hypothetical protein
1632	 74.36	+1	1735288..1736106	+	272	77463597	-	RSP_6085	-	hypothetical protein
1633	 68.06	0	1736242..1736961	-	239	77463598	fliA	RSP_0032	-	sigma factor FliA (sigma-28 group, flagellar)
1634	 77.02	+1	1736958..1737971	-	337	77463599	-	RSP_0033	-	hypothetical protein
1635	 70.50	0	1737975..1740089	-	704	77463600	flhA	RSP_0034	-	flagellar biosynthesis protein, FlhA
1636	 71.14	0	1740409..1740810	+	133	77463601	-	RSP_0035	-	hypothetical protein
1637	 76.98	+1	1740807..1741892	+	361	77463602	-	RSP_6086	-	hypothetical protein
1638	 77.28	+2	1741889..1742557	+	222	77463603	flgA	RSP_0036	-	flagellar basal-body P-ring formation protein FlgA
1639	 65.08	0	1742579..1742893	+	104	77463604	flgM	RSP_0037	-	putative FlgM, negative regulator of flagellin synthesis
1640	 72.58	0	1742922..1743293	+	123	77463605	-	RSP_6087	-	hypothetical protein
1641	 76.78	+1	1743312..1743944	-	210	77463606	-	RSP_6088	-	Sel1 repeat-containing protein
1642	 69.54	0	1743941..1744393	-	150	77463607	-	RSP_6089	-	hypothetical protein
1643	 73.46	+1	1744503..1744988	+	161	77463608	-	RSP_6090	-	hypothetical protein
1644	 76.19	+1	1745042..1745230	+	62	77463609	-	RSP_0038	-	hypothetical protein
1645	 78.93	+2	1745558..1745875	-	105	77463610	-	RSP_0039	-	hypothetical protein
1646	 67.19	0	1745872..1746252	-	126	77463611	fliS	RSP_0040	-	putative flagellar protein FliS
1647	 76.98	+1	1746536..1747117	-	193	77463612	-	RSP_0041	-	hypothetical protein
1648	 73.42	+1	1747255..1750542	-	1095	77463613	cheA3	RSP_0042	-	chemotaxis histidine protein kinase, CheA3
1649	 66.17	0	1750569..1750973	-	134	77463614	cheY6	RSP_0043	-	chemotaxis response regulator, CheY6
1650	 73.36	+1	1751177..1752880	-	567	77463615	tlpT	RSP_0044	-	putative cytoplasmic chemoreceptor, TlpT
1651	 74.06	+1	1752877..1753593	-	238	77463616	slp	RSP_0045	-	Slp
1652	 70.20	0	1753606..1754115	-	169	77463617	cheW4	RSP_0046	-	CheW protein
1653	 74.59	+1	1754134..1755231	-	365	77463618	cheB2	RSP_0047	-	chemotaxis methylesterase, CheB2
1654	 70.00	0	1755231..1756040	-	269	77463619	cheR3	RSP_0048	-	MCP methyltransferase, CheR-type
1655	 71.42	0	1756037..1757236	-	399	77463620	cheA4	RSP_0049	-	chemotaxis histidine protein kinase, CheA4
1656	 57.52	-2	1757381..1757686	-	101	77463621	-	RSP_6091	-	hypothetical protein
1657	 72.56	0	1758112..1759248	+	378	77463622	torF	RSP_0051	-	Torf protein
1658	 70.68	0	1759262..1759585	+	107	77463623	fliE	RSP_0052	-	flagellar protein FliE
1659	 72.80	0	1759605..1761317	+	570	77463624	fliF1	RSP_0053	-	flagellar FliF M-ring protein
1660	 67.84	0	1761319..1762341	+	340	77463625	fliG	RSP_0054	-	flagellar motor switch protein FliG
1661	 77.82	+2	1762345..1763169	+	274	77463626	fliH	RSP_0055	-	flagellar protein FliH
1662	 71.93	0	1763166..1764494	+	442	77463627	fliI	RSP_0056	-	flagellum-specific ATPase FliI
1663	 78.43	+2	1764496..1764903	+	135	77463628	fliJ	RSP_0057	-	flagellar protein FliJ
1664	 76.90	+1	1764958..1767057	+	699	77463629	fliK	RSP_0058	-	FliK, flagellar hook-length control protein
1665	 70.33	0	1767068..1767640	+	190	77463630	fliL	RSP_0059	-	flagellar biosynthesis protein, FliL
1666	 66.05	0	1767644..1768615	+	323	77463631	fliM	RSP_0060	-	flagellar switch protein FliM
1667	 68.69	0	1768772..1769068	+	98	77463632	fliN	RSP_0061	-	flagellar motor switch FliN protein
1668	 70.93	0	1769200..1769457	+	85	77463633	fliO	RSP_0062	-	flagellar protein FliO
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.