IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1346	 71.54	0	1407231..1407743	+	170	77463311	-	RSP_2758	-	hypothetical protein
1347	 73.13	+1	1407736..1408137	+	133	77463312	-	RSP_2759	-	hypothetical protein
1348	 70.42	0	1408130..1408582	+	150	77463313	-	RSP_2760	-	hypothetical protein
1349	 67.09	0	1408579..1408812	+	77	77463314	-	RSP_2761	-	putative P2-like prophage tail protein X
1350	 67.23	0	1409510..1409863	-	117	77463315	-	RSP_2762	-	hypothetical protein
1351	 60.24	-2	1410065..1410313	+	82	77463316	-	RSP_2763	-	hypothetical protein
1352	 66.99	0	1410310..1410615	+	101	77463317	-	RSP_2764	-	hypothetical protein
1353	 71.79	0	1411144..1411416	+	90	77463318	-	RSP_2765	-	hypothetical protein
1354	 70.07	0	1412708..1413001	+	97	77463319	-	RSP_6070	-	hypothetical protein
1355	 69.95	0	1413396..1413761	-	121	77463320	-	RSP_6242	-	hypothetical protein
1356	 70.33	0	1413841..1415862	-	673	77463321	-	RSP_2766	-	hypothetical protein
1357	 68.72	0	1415997..1416971	-	324	77463322	-	RSP_2768	-	methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase
1358	 67.59	0	1416968..1417939	-	323	77463323	-	RSP_2769	-	5,10-methylenetetrahydrofolate reductase
1359	 69.73	0	1417926..1418219	-	97	77463324	-	RSP_2770	-	hypothetical protein
1360	 68.51	0	1418489..1419625	+	378	77463325	-	RSP_2771	-	putative exopolyphosphatase
1361	 68.03	0	1419622..1420356	+	244	77463326	ftsJ	RSP_2772	-	23S rRNA methylase
1362	 64.63	-1	1420507..1421145	-	212	77463327	-	RSP_2773	-	hypothetical protein
1363	 69.53	0	1421362..1423002	+	546	77463328	-	RSP_2774	-	hypothetical protein
1364	 70.79	0	1423051..1424142	+	363	77463329	lpxD	RSP_2775	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1365	 62.92	-1	1424176..1424442	+	88	77463330	acpP	RSP_2776	-	Acyl carrier protein, AcpP
1366	 68.07	0	1424454..1425662	+	402	77463331	-	RSP_2777	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1367	 68.91	0	1425730..1426398	-	222	77463332	-	RSP_2778	-	hypothetical protein
1368	 66.94	0	1426933..1428399	-	488	77463333	catA	RSP_2779	-	catalase
1369	 73.57	+1	1428501..1429427	+	308	77463334	oxyR	RSP_2780	-	LysR family transcriptional regulator
1370	 67.40	0	1429456..1430004	-	182	77463335	-	RSP_2781	-	peroxiredoxin/glutaredoxin family protein
1371	 68.85	0	1430166..1430897	-	243	77463336	aqpZ	RSP_2782	-	aquaporin z, major Intrinsic protein (MIP) family
1372	 67.81	0	1431034..1431996	+	320	77463337	lipA	RSP_2783	-	lipoyl synthase
1373	 70.15	0	1432069..1432959	-	296	77463338	cycG	RSP_2784	-	diheme class I cytochrome c
1374	 67.75	0	1432963..1433424	-	153	77463339	CycF	RSP_2785	-	cytochrome c-554
1375	 64.10	-1	1433831..1434376	-	181	77463340	HPRT	RSP_2786	-	hypoxanthine phosphoribosyltransferase
1376	 64.24	-1	1434468..1434920	+	150	77463341	-	RSP_2787	-	hypothetical protein
1377	 68.40	0	1434945..1435232	+	95	77463342	-	RSP_2788	-	hypothetical protein
1378	 68.12	0	1435363..1436742	-	459	77463343	-	RSP_2865	-	putative transposase
1379	 67.37	0	1436969..1437679	+	236	77463344	cbbE	RSP_2864	-	ribulose-5-phosphate 3-epimerase
1380	 68.95	0	1437761..1438945	-	394	77463345	-	RSP_2862	-	glycine/D-amino acid oxidase (deaminating)
1381	 66.33	0	1439332..1440228	-	298	77463346	tsf	RSP_2861	-	elongation factor Ts
1382	 66.27	0	1440310..1441071	-	253	77463347	rpsB	RSP_2860	-	30S ribosomal protein S2
1383	 75.96	+1	1441320..1442234	+	304	77463348	-	RSP_6216	-	carbohydrate kinase PfkB family
1384	 71.60	0	1442231..1443142	+	303	77463349	-	RSP_2858	-	IndA involved in pigment biosynthesis
1385	 68.05	0	1443169..1443966	-	265	77463350	-	RSP_2857	-	D-beta-hydroxybutyrate dehydrogenase
1386	 67.99	0	1444233..1446044	+	603	77463351	-	RSP_2856	-	putative oligopeptide ABC transporter, periplasmic-binding protein
1387	 69.05	0	1446268..1449534	-	1088	77463352	-	RSP_2855	-	cation efflux transporter
1388	 73.39	+1	1449545..1450705	-	386	77463353	-	RSP_2854	-	cation efflux transporter
1389	 69.47	0	1450705..1451346	-	213	77463354	-	RSP_2853	-	TetR family transcriptional regulator
1390	 70.39	0	1451545..1452189	+	214	77463355	-	RSP_2852	-	polyketide biosynthesis associated protein
1391	 70.28	0	1452186..1453403	+	405	77463356	-	RSP_2851	-	major facilitator superfamily multidrug-efflux transporter
1392	 68.35	0	1453666..1457163	-	1165	77463357	mfd	RSP_2850	-	transcription-repair coupling factor (helicase)
1393	 66.86	0	1457240..1457755	-	171	77463358	-	RSP_2849	-	hypothetical protein
1394	 67.76	0	1457899..1458903	+	334	77463359	hemB	RSP_2848	-	delta-aminolevulinic acid dehydratase
1395	 68.42	0	1459018..1459587	+	189	77463360	-	RSP_2847	-	hypothetical protein
1396	 70.03	0	1459785..1460675	-	296	77463361	-	RSP_2846	-	putative 3-hydroxyisobutyrate dehydrogenase
1397	 69.01	0	1460728..1463199	+	823	77463362	-	RSP_2845	-	putative penicillin acylase (penicillin amidase)
1398	 69.86	0	1463661..1464911	-	416	77463363	-	RSP_2844	-	putative GTP-binding protein
1399	 53.42	-2	1465006..1465239	-	77	77463364	hfq	RSP_2843	-	RNA-binding protein Hfq
1400	 69.84	0	1465397..1466908	-	503	77463365	trkH1	RSP_2842	-	potassium uptake transporter, transmembrane subunit, TrkH
1401	 67.68	0	1466910..1468286	-	458	77463366	trkA	RSP_2841	-	potassium transporter peripheral membrane component
1402	 68.13	0	1468341..1469771	-	476	77463367	ntrX	RSP_2840	-	nitrogen assimilation transcriptional regulator, NtrX
1403	 68.92	0	1469768..1472077	-	769	77463368	ntrY	RSP_2839	-	nitrogen regulation protein, NtrY, Signal transduction histidine kinase
1404	 68.64	0	1472129..1473496	-	455	77463369	ntrC	RSP_2838	-	nitrogen metabolism transcriptional regulator, NtrC
1405	 67.21	0	1473496..1474602	-	368	77463370	ntrB	RSP_2837	-	nitrogen regulation protein, NtrB signal transduction histidine kinase
1406	 74.01	+1	1474599..1475579	-	326	77463371	nifR3	RSP_2836	-	tRNA-dihydrouridine synthase, nifR3
1407	 75.07	+1	1475793..1476470	+	225	77463372	ispD	RSP_2835	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
1408	 69.38	0	1476579..1477058	+	159	77463373	ispF	RSP_6071	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1409	 71.49	0	1477055..1477552	+	165	77463374	pgpA	RSP_2834	-	putative phosphatidylglycerophosphatase A
1410	 74.07	+1	1477549..1478034	+	161	77463375	cinA	RSP_2833	-	putative competence-damaged inducible protein
1411	 72.86	0	1478069..1479247	-	392	77463376	-	RSP_2832	-	flavoprotein
1412	 66.17	0	1479750..1480358	-	202	77463377	cobO	RSP_2831	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1413	 73.66	+1	1480355..1481584	-	409	77463378	-	RSP_2830	-	hypothetical protein
1414	 73.61	+1	1481992..1482351	+	119	77463379	-	RSP_2829	-	hypothetical protein
1415	 71.87	0	1482348..1483385	+	345	77463380	cobW	RSP_2828	-	cobalamin synthesis protein CobW
1416	 73.37	+1	1483389..1486625	+	1078	77463381	cobN	RSP_2827	-	cobaltochelatase
1417	 71.75	0	1486625..1487254	+	209	77463382	cobH	RSP_6217	-	precorrin-8X methylmutase
1418	 70.36	0	1487254..1487985	+	243	77463383	cobI	RSP_2826	-	precorrin-2 C20-methyltransferase
1419	 71.56	0	1487982..1488716	+	244	77463384	cobJ	RSP_2824	-	precorrin-3 methyltransferase
1420	 75.13	+1	1488692..1489435	-	247	77463385	cobK	RSP_2825	-	cobalt-precorrin-6x reductase
1421	 76.46	+1	1489434..1490597	+	387	77463386	cobL	RSP_2823	-	putative precorrin-6y C5,15-methyltransferase
1422	 77.07	+1	1490594..1490968	+	124	77463387	cobE	RSP_2822	-	putative precorrin methylase
1423	 72.67	0	1490965..1491747	+	260	77463388	cobM	RSP_2821	-	precorrin-4 C11-methyltransferase
1424	 73.14	+1	1491744..1492469	+	241	77463389	cobA	RSP_2820	-	uroporphyrin-III C-methyltransferase
1425	 71.63	0	1492560..1493324	+	254	77463390	cobF	RSP_2819	-	precorrin 6A synthase
1426	 72.24	0	1493773..1494885	-	370	77463391	aroB	RSP_2818	-	3-dehydroquinate synthase
1427	 70.51	0	1494882..1495427	-	181	77463392	aroK	RSP_2817	-	shikimate kinase
1428	 73.49	+1	1495740..1497308	+	522	77463393	-	RSP_2816	-	hypothetical protein
1429	 70.51	0	1497308..1498243	+	311	77463394	xerD	RSP_2815	-	integrase/recombinase XerD
1430	 66.67	0	1498312..1499640	+	442	77463395	corB	RSP_2814	-	hypothetical protein
1431	 73.88	+1	1499610..1500746	-	378	77463396	-	RSP_6073	-	hypothetical protein
1432	 72.22	0	1500964..1501341	+	125	77463397	-	RSP_6226	-	hypothetical protein
1433	 67.64	0	1501478..1503019	-	513	77463398	mttB	RSP_2813	-	putative trimethylamine methyltransferase protein
1434	 74.26	+1	1503135..1503740	-	201	77463399	-	RSP_2812	-	hypothetical protein
1435	 69.77	0	1503743..1504708	-	321	77463400	-	RSP_2811	-	ABC transporter periplasmic substrate-binding protein
1436	 67.18	0	1504712..1505485	-	257	77463401	-	RSP_2810	-	ABC transporter, ATPase subunit
1437	 67.76	0	1505485..1506585	-	366	77463402	-	RSP_2809	-	ABC transporter, inner membrane subunit
1438	 64.71	0	1507076..1507330	+	84	77463403	-	RSP_2808	-	hypothetical protein
1439	 71.36	0	1507335..1507973	+	212	77463404	-	RSP_2807	-	putative cytochrome b
1440	 65.63	0	1508872..1511280	-	802	77463405	lon	RSP_2806	-	Lon-A peptidase
1441	 69.15	0	1511542..1512630	-	362	77463406	nemA	RSP_2805	-	putative NADH-flavin oxidoreductase
1442	 69.23	0	1512737..1513867	-	376	77463407	tgt	RSP_2804	-	queuine tRNA-ribosyltransferase
1443	 66.28	0	1514033..1517110	-	1025	77463408	-	RSP_2803	-	RND family multidrug/cation transporter
1444	 69.22	0	1517118..1518293	-	391	77463409	-	RSP_2802	-	multidrug/cation efflux pump, membrane fusion protein subunit
1445	 71.23	0	1518439..1519008	+	189	77463410	tetR	RSP_2801	-	TetR family transcriptional regulator
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.