IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1304	 69.74	0	1366799..1368622	+	607	77463269	-	RSP_2717	-	putative UUP ATPase
1305	 67.00	0	1368835..1369437	+	200	77463270	-	RSP_2718	-	outer membrane protein
1306	 70.00	0	1369671..1370120	+	149	77463271	-	RSP_2719	-	AsnC family transcriptional regulator
1307	 74.55	+1	1370494..1371102	+	202	77463272	-	RSP_2720	-	LysE/RhtB family amino acid efflux pump
1308	 70.50	0	1371099..1371437	-	112	77463273	-	RSP_2721	-	hypothetical protein
1309	 67.00	0	1371654..1373153	+	499	77463274	cysS	RSP_2722	-	cysteinyl-tRNA synthetase
1310	 70.78	0	1373279..1374931	+	550	77463275	-	RSP_2723	-	alpha-isopropylmalate/homocitrate synthase family transferase
1311	 73.61	+1	1374928..1375647	+	239	77463276	-	RSP_2724	-	methylase involved in ubiquinone/menaquinone biosynthesis
1312	 77.99	+2	1375644..1376411	+	255	77463277	-	RSP_2725	-	phytoene/squalene synthetase
1313	 70.76	0	1376415..1377635	-	406	77463278	-	RSP_2726	-	major facilitator superfamily multidrug transporter
1314	 73.65	+1	1377774..1378403	+	209	77463279	-	RSP_2727	-	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
1315	 73.60	+1	1378400..1379062	+	220	77463280	-	RSP_2728	-	phospholipase/carboxylesterase
1316	 65.13	0	1379593..1380177	+	194	77463281	-	RSP_2729	-	restriction endonuclease
1317	 70.64	0	1380472..1380798	+	108	77463282	-	RSP_2730	-	ArsR family transcriptional regulator
1318	 70.17	0	1381081..1381794	+	237	77463283	ArsH	RSP_2731	-	arsenical resistance protein, ArsH
1319	 74.83	+1	1381791..1382954	+	387	77463284	-	RSP_2732	-	major facilitator transporter
1320	 67.08	0	1383171..1384622	+	483	77463285	zwf	RSP_2734	-	glucose-6-phosphate 1-dehydrogenase
1321	 71.28	0	1384661..1385332	+	223	77463286	pgl	RSP_2735	-	6-phosphogluconolactonase
1322	 69.10	0	1385352..1386953	+	533	77463287	pgi	RSP_2736	-	glucose-6-phosphate isomerase
1323	 69.54	0	1387180..1387527	-	115	77463288	-	RSP_2737	-	putative ssRNA endoribonuclease L-PSP
1324	 69.83	0	1387846..1388793	+	315	77463289	-	RSP_2738	-	rhodanese-related sulfurtransferase
1325	 73.85	+1	1388804..1389931	+	375	77463290	-	RSP_2739	-	hypothetical protein
1326	 75.00	+1	1389928..1390095	+	55	77463291	-	RSP_6066	-	hypothetical protein
1327	 65.55	0	1390370..1391626	+	418	77463292	-	RSP_2740	-	putative glucose/sorbosone dehydrogenase
1328	 71.02	0	1391623..1392219	+	198	77463293	-	RSP_2741	-	class I diheme cytochrome c4
1329	 68.18	0	1392245..1392574	-	109	77463294	-	RSP_6067	-	hypothetical protein
1330	 67.90	0	1392722..1393936	+	404	77463295	-	RSP_2742	-	hypothetical protein
1331	 70.83	0	1393970..1394737	-	255	77463296	-	RSP_2744	-	hypothetical protein
1332	 68.63	0	1394903..1395871	+	322	77463297	-	RSP_2745	-	hypothetical protein
1333	 72.38	0	1395862..1396806	-	314	77463298	-	RSP_2746	-	hypothetical protein
1334	 71.03	0	1396918..1398246	-	442	77463299	-	RSP_2747	-	glycosyltransferase
1335	 66.16	0	1398481..1398876	-	131	77463300	-	RSP_2748	-	CopG family transcriptional regulator
1336	 71.52	0	1399432..1400751	+	439	77463301	-	RSP_2749	-	P4 family integrase
1337	 64.05	-1	1401018..1401476	+	152	77463302	-	RSP_2750	-	hypothetical protein
1338	 65.22	0	1401473..1402648	+	391	77463303	-	RSP_2751	-	hypothetical protein
1339	 68.27	0	1402642..1403139	+	165	77463304	-	RSP_2753	-	hypothetical protein
1340	 66.95	0	1403136..1403489	+	117	77463305	-	RSP_6068	-	hypothetical protein
1341	 76.26	+1	1403476..1404069	+	197	77463306	-	RSP_2754	-	hypothetical protein
1342	 71.60	0	1404223..1404648	+	141	77463307	-	RSP_2755	-	hypothetical protein
1343	 71.11	0	1404645..1405229	+	194	77463308	-	RSP_2756	-	hypothetical protein
1344	 71.65	0	1405775..1406557	+	260	77463309	-	RSP_6069	-	hypothetical protein
1345	 68.65	0	1406572..1407225	+	217	77463310	-	RSP_2757	-	hypothetical protein
1346	 71.54	0	1407231..1407743	+	170	77463311	-	RSP_2758	-	hypothetical protein
1347	 73.13	+1	1407736..1408137	+	133	77463312	-	RSP_2759	-	hypothetical protein
1348	 70.42	0	1408130..1408582	+	150	77463313	-	RSP_2760	-	hypothetical protein
1349	 67.09	0	1408579..1408812	+	77	77463314	-	RSP_2761	-	putative P2-like prophage tail protein X
1350	 67.23	0	1409510..1409863	-	117	77463315	-	RSP_2762	-	hypothetical protein
1351	 60.24	-2	1410065..1410313	+	82	77463316	-	RSP_2763	-	hypothetical protein
1352	 66.99	0	1410310..1410615	+	101	77463317	-	RSP_2764	-	hypothetical protein
1353	 71.79	0	1411144..1411416	+	90	77463318	-	RSP_2765	-	hypothetical protein
1354	 70.07	0	1412708..1413001	+	97	77463319	-	RSP_6070	-	hypothetical protein
1355	 69.95	0	1413396..1413761	-	121	77463320	-	RSP_6242	-	hypothetical protein
1356	 70.33	0	1413841..1415862	-	673	77463321	-	RSP_2766	-	hypothetical protein
1357	 68.72	0	1415997..1416971	-	324	77463322	-	RSP_2768	-	methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase
1358	 67.59	0	1416968..1417939	-	323	77463323	-	RSP_2769	-	5,10-methylenetetrahydrofolate reductase
1359	 69.73	0	1417926..1418219	-	97	77463324	-	RSP_2770	-	hypothetical protein
1360	 68.51	0	1418489..1419625	+	378	77463325	-	RSP_2771	-	putative exopolyphosphatase
1361	 68.03	0	1419622..1420356	+	244	77463326	ftsJ	RSP_2772	-	23S rRNA methylase
1362	 64.63	-1	1420507..1421145	-	212	77463327	-	RSP_2773	-	hypothetical protein
1363	 69.53	0	1421362..1423002	+	546	77463328	-	RSP_2774	-	hypothetical protein
1364	 70.79	0	1423051..1424142	+	363	77463329	lpxD	RSP_2775	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1365	 62.92	-1	1424176..1424442	+	88	77463330	acpP	RSP_2776	-	Acyl carrier protein, AcpP
1366	 68.07	0	1424454..1425662	+	402	77463331	-	RSP_2777	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1367	 68.91	0	1425730..1426398	-	222	77463332	-	RSP_2778	-	hypothetical protein
1368	 66.94	0	1426933..1428399	-	488	77463333	catA	RSP_2779	-	catalase
1369	 73.57	+1	1428501..1429427	+	308	77463334	oxyR	RSP_2780	-	LysR family transcriptional regulator
1370	 67.40	0	1429456..1430004	-	182	77463335	-	RSP_2781	-	peroxiredoxin/glutaredoxin family protein
1371	 68.85	0	1430166..1430897	-	243	77463336	aqpZ	RSP_2782	-	aquaporin z, major Intrinsic protein (MIP) family
1372	 67.81	0	1431034..1431996	+	320	77463337	lipA	RSP_2783	-	lipoyl synthase
1373	 70.15	0	1432069..1432959	-	296	77463338	cycG	RSP_2784	-	diheme class I cytochrome c
1374	 67.75	0	1432963..1433424	-	153	77463339	CycF	RSP_2785	-	cytochrome c-554
1375	 64.10	-1	1433831..1434376	-	181	77463340	HPRT	RSP_2786	-	hypoxanthine phosphoribosyltransferase
1376	 64.24	-1	1434468..1434920	+	150	77463341	-	RSP_2787	-	hypothetical protein
1377	 68.40	0	1434945..1435232	+	95	77463342	-	RSP_2788	-	hypothetical protein
1378	 68.12	0	1435363..1436742	-	459	77463343	-	RSP_2865	-	putative transposase
1379	 67.37	0	1436969..1437679	+	236	77463344	cbbE	RSP_2864	-	ribulose-5-phosphate 3-epimerase
1380	 68.95	0	1437761..1438945	-	394	77463345	-	RSP_2862	-	glycine/D-amino acid oxidase (deaminating)
1381	 66.33	0	1439332..1440228	-	298	77463346	tsf	RSP_2861	-	elongation factor Ts
1382	 66.27	0	1440310..1441071	-	253	77463347	rpsB	RSP_2860	-	30S ribosomal protein S2
1383	 75.96	+1	1441320..1442234	+	304	77463348	-	RSP_6216	-	carbohydrate kinase PfkB family
1384	 71.60	0	1442231..1443142	+	303	77463349	-	RSP_2858	-	IndA involved in pigment biosynthesis
1385	 68.05	0	1443169..1443966	-	265	77463350	-	RSP_2857	-	D-beta-hydroxybutyrate dehydrogenase
1386	 67.99	0	1444233..1446044	+	603	77463351	-	RSP_2856	-	putative oligopeptide ABC transporter, periplasmic-binding protein
1387	 69.05	0	1446268..1449534	-	1088	77463352	-	RSP_2855	-	cation efflux transporter
1388	 73.39	+1	1449545..1450705	-	386	77463353	-	RSP_2854	-	cation efflux transporter
1389	 69.47	0	1450705..1451346	-	213	77463354	-	RSP_2853	-	TetR family transcriptional regulator
1390	 70.39	0	1451545..1452189	+	214	77463355	-	RSP_2852	-	polyketide biosynthesis associated protein
1391	 70.28	0	1452186..1453403	+	405	77463356	-	RSP_2851	-	major facilitator superfamily multidrug-efflux transporter
1392	 68.35	0	1453666..1457163	-	1165	77463357	mfd	RSP_2850	-	transcription-repair coupling factor (helicase)
1393	 66.86	0	1457240..1457755	-	171	77463358	-	RSP_2849	-	hypothetical protein
1394	 67.76	0	1457899..1458903	+	334	77463359	hemB	RSP_2848	-	delta-aminolevulinic acid dehydratase
1395	 68.42	0	1459018..1459587	+	189	77463360	-	RSP_2847	-	hypothetical protein
1396	 70.03	0	1459785..1460675	-	296	77463361	-	RSP_2846	-	putative 3-hydroxyisobutyrate dehydrogenase
1397	 69.01	0	1460728..1463199	+	823	77463362	-	RSP_2845	-	putative penicillin acylase (penicillin amidase)
1398	 69.86	0	1463661..1464911	-	416	77463363	-	RSP_2844	-	putative GTP-binding protein
1399	 53.42	-2	1465006..1465239	-	77	77463364	hfq	RSP_2843	-	RNA-binding protein Hfq
1400	 69.84	0	1465397..1466908	-	503	77463365	trkH1	RSP_2842	-	potassium uptake transporter, transmembrane subunit, TrkH
1401	 67.68	0	1466910..1468286	-	458	77463366	trkA	RSP_2841	-	potassium transporter peripheral membrane component
1402	 68.13	0	1468341..1469771	-	476	77463367	ntrX	RSP_2840	-	nitrogen assimilation transcriptional regulator, NtrX
1403	 68.92	0	1469768..1472077	-	769	77463368	ntrY	RSP_2839	-	nitrogen regulation protein, NtrY, Signal transduction histidine kinase
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.