IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1240	 64.64	0	1296071..1296910	-	279	77463205	-	RSP_2653	-	AAA family ATPase
1241	 63.52	-1	1297043..1297519	+	158	77463206	-	RSP_2654	-	DnaK suppressor protein
1242	 71.60	0	1297615..1298790	+	391	77463207	nahG	RSP_2656	-	putative salicylate hydroxylase (salicylate 1-monooxygenase)
1243	 71.68	0	1298787..1299185	-	132	77463208	-	RSP_2655	-	hypothetical protein
1244	 68.59	0	1299328..1300107	-	259	77463209	xthA	RSP_2657	-	exodeoxyribonuclease III
1245	 63.61	-1	1300184..1300510	-	108	77463210	-	RSP_2658	-	HesB/YadR/YfhF family protein
1246	 67.55	0	1300585..1301721	+	378	77463211	dgt	RSP_2659	-	deoxyguanosinetriphosphate triphosphohydrolase
1247	 67.29	0	1301738..1302859	+	373	77463212	-	RSP_2660	-	ribonuclease BN family protein
1248	 76.55	+1	1302865..1304007	-	380	77463213	-	RSP_2661	-	Iron-containing alcohol dehydrogenase
1249	 70.78	0	1304004..1305485	-	493	77463214	glpK	RSP_2662	-	glycerol kinase
1250	 66.14	0	1305874..1307598	-	574	77463215	-	RSP_2663	-	ABC sugar (glycerol) transporter, periplasmic binding protein
1251	 69.23	0	1307660..1307932	-	90	77463216	-	RSP_2664	-	hypothetical protein
1252	 62.56	-1	1307934..1308737	-	267	77463217	-	RSP_2665	-	ABC sugar (glycerol) transporter, inner membrane subunit
1253	 62.77	-1	1308775..1309647	-	290	77463218	-	RSP_2666	-	ABC sugar (glycerol) transporter, inner membrane subunit
1254	 67.86	0	1309647..1310732	-	361	77463219	-	RSP_2667	-	ABC sugar (glycerol) transporter, ATPase subunit
1255	 69.70	0	1310743..1311831	-	362	77463220	-	RSP_2669	-	ABC sugar (glycerol) transporter, ATPase subunit
1256	 70.25	0	1311961..1313580	-	539	77463221	glpD	RSP_2670	-	glycerol-3-phosphate dehydrogenase
1257	 66.30	0	1314041..1314316	-	91	77463222	-	RSP_2671	-	hypothetical protein
1258	 74.44	+1	1314483..1314842	+	119	77463223	-	RSP_2672	-	hypothetical protein
1259	 68.71	0	1314937..1317282	-	781	77463224	-	RSP_2673	-	quinoprotein glucose dehydrogenase
1260	 62.64	-1	1317485..1317832	-	115	77463225	-	RSP_2674	-	hypothetical protein
1261	 73.33	+1	1318469..1319263	-	264	77463226	-	RSP_2675	-	hypothetical protein
1262	 71.05	0	1319386..1320297	-	303	77463227	-	RSP_2676	-	hypothetical protein
1263	 66.67	0	1321303..1321683	-	126	77463228	-	RSP_6064	-	response regulator receiver domain-containing protein
1264	 68.66	0	1321994..1322746	+	250	77463229	-	RSP_2677	-	Mg2+ transporter
1265	 71.37	0	1322934..1323188	-	84	77463230	-	RSP_2678	-	hypothetical protein
1266	 71.15	0	1323185..1325791	-	868	77463231	-	RSP_2679	-	ATP-dependent DNA ligase
1267	 65.74	0	1326562..1326777	-	71	77463232	-	RSP_6225	-	hypothetical protein
1268	 66.86	0	1326905..1327411	+	168	77463233	rpoE	RSP_2681	-	sigma factor, RpoE
1269	 70.85	0	1327641..1328573	+	310	77463234	fabD	RSP_2682	-	[Acyl-carrier-protein] S-malonyltransferase
1270	 72.29	0	1328804..1329034	-	76	77463235	-	RSP_2683	-	hypothetical protein
1271	 70.81	0	1329031..1329513	-	160	77463236	-	RSP_2684	-	putative endonuclease involved in recombination
1272	 73.52	+1	1329510..1330763	-	417	77463237	-	RSP_2685	-	putative cytochrome c-type biogenesis protein, cycH
1273	 66.67	0	1330960..1332207	+	415	77463238	-	RSP_2686	-	putative sarcosine oxidase beta subunit
1274	 63.47	-1	1332287..1332661	+	124	77463239	fbcQ	RSP_2687	-	cytochrome b-c1 subunit IV
1275	 63.58	-1	1332701..1333024	+	107	77463240	soxD	RSP_2688	-	putative sarcosine oxidase delta subunit protein
1276	 70.22	0	1333021..1336002	+	993	77463241	soxA	RSP_2689	-	putative sarcosine oxidase, alpha subunit
1277	 70.79	0	1335995..1336552	+	185	77463242	-	RSP_2690	-	putative sarcosine oxidase gamma subunit
1278	 68.16	0	1336565..1338508	-	647	77463243	-	RSP_2692	-	acyltransferase domain-containing protein
1279	 62.00	-1	1338764..1339363	+	199	77463244	-	RSP_2693	-	Fe/Mn family superoxide dismutase
1280	 67.75	0	1339516..1340070	-	184	77463245	-	RSP_2694	-	hypothetical protein
1281	 73.54	+1	1340171..1341493	+	440	77463246	-	RSP_2695	-	peptidoglycan-binding protein
1282	 67.92	0	1341579..1343417	+	612	77463247	-	RSP_2696	-	ABC transporter, fused ATPase and inner membrane subunits
1283	 72.07	0	1343517..1344164	+	215	77463248	-	RSP_2697	-	hypothetical protein
1284	 72.53	0	1344210..1345556	+	448	77463249	-	RSP_2698	-	putative quinoprotein
1285	 67.96	0	1345615..1347078	+	487	77463250	engA	RSP_2699	-	GTP-binding protein EngA
1286	 73.69	+1	1347320..1349299	-	659	77463251	-	RSP_2700	-	ABC oligo/dipeptide transporter, fused ATPase subunits
1287	 71.43	0	1349292..1350446	-	384	77463252	-	RSP_2701	-	ABC oligo/dipeptide transporter, inner membrane subunit
1288	 70.27	0	1350446..1351471	-	341	77463253	-	RSP_2702	-	ABC oligo/dipeptide transporter, inner membrane subunit
1289	 65.80	0	1351475..1352980	-	501	77463254	-	RSP_2703	-	ABC dipeptide transporter, periplasmic binding protein
1290	 71.75	0	1353302..1354246	-	314	77463255	miaA	RSP_2704	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1291	 65.32	0	1354336..1355076	+	246	77463256	pyrH	RSP_2705	-	uridylate kinase
1292	 64.37	-1	1355162..1355728	+	188	77463257	frr	RSP_2706	-	ribosome recycling factor
1293	 70.16	0	1355798..1356541	+	247	77463258	uppS	RSP_2707	-	undecaprenyl pyrophosphate synthetase
1294	 68.61	0	1356538..1357359	+	273	77463259	cdsA	RSP_2708	-	phosphatidate cytidylyltransferase
1295	 69.70	0	1357368..1358552	+	394	77463260	dxr	RSP_2709	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1296	 68.39	0	1358559..1359893	+	444	77463261	-	RSP_2710	-	putative membrane-associated zinc metalloprotease
1297	 64.49	-1	1360060..1360197	+	45	77463262	-	RSP_6065	-	hypothetical protein
1298	 66.38	0	1360291..1362690	+	799	77463263	-	RSP_2711	-	putative outer membrane protein
1299	 74.31	+1	1362690..1363382	+	230	77463264	-	RSP_6204	-	hypothetical protein
1300	 64.74	0	1363468..1363935	+	155	77463265	fabZ	RSP_2712	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
1301	 71.16	0	1363966..1364721	+	251	77463266	lpxA	RSP_2714	-	UDP-N-acetylglucosamine acyltransferase
1302	 75.79	+1	1364718..1365539	+	273	77463267	-	RSP_2715	-	hypothetical protein
1303	 72.72	0	1365536..1366675	+	379	77463268	lpxB	RSP_2716	-	lipid-A-disaccharide synthase
1304	 69.74	0	1366799..1368622	+	607	77463269	-	RSP_2717	-	putative UUP ATPase
1305	 67.00	0	1368835..1369437	+	200	77463270	-	RSP_2718	-	outer membrane protein
1306	 70.00	0	1369671..1370120	+	149	77463271	-	RSP_2719	-	AsnC family transcriptional regulator
1307	 74.55	+1	1370494..1371102	+	202	77463272	-	RSP_2720	-	LysE/RhtB family amino acid efflux pump
1308	 70.50	0	1371099..1371437	-	112	77463273	-	RSP_2721	-	hypothetical protein
1309	 67.00	0	1371654..1373153	+	499	77463274	cysS	RSP_2722	-	cysteinyl-tRNA synthetase
1310	 70.78	0	1373279..1374931	+	550	77463275	-	RSP_2723	-	alpha-isopropylmalate/homocitrate synthase family transferase
1311	 73.61	+1	1374928..1375647	+	239	77463276	-	RSP_2724	-	methylase involved in ubiquinone/menaquinone biosynthesis
1312	 77.99	+2	1375644..1376411	+	255	77463277	-	RSP_2725	-	phytoene/squalene synthetase
1313	 70.76	0	1376415..1377635	-	406	77463278	-	RSP_2726	-	major facilitator superfamily multidrug transporter
1314	 73.65	+1	1377774..1378403	+	209	77463279	-	RSP_2727	-	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
1315	 73.60	+1	1378400..1379062	+	220	77463280	-	RSP_2728	-	phospholipase/carboxylesterase
1316	 65.13	0	1379593..1380177	+	194	77463281	-	RSP_2729	-	restriction endonuclease
1317	 70.64	0	1380472..1380798	+	108	77463282	-	RSP_2730	-	ArsR family transcriptional regulator
1318	 70.17	0	1381081..1381794	+	237	77463283	ArsH	RSP_2731	-	arsenical resistance protein, ArsH
1319	 74.83	+1	1381791..1382954	+	387	77463284	-	RSP_2732	-	major facilitator transporter
1320	 67.08	0	1383171..1384622	+	483	77463285	zwf	RSP_2734	-	glucose-6-phosphate 1-dehydrogenase
1321	 71.28	0	1384661..1385332	+	223	77463286	pgl	RSP_2735	-	6-phosphogluconolactonase
1322	 69.10	0	1385352..1386953	+	533	77463287	pgi	RSP_2736	-	glucose-6-phosphate isomerase
1323	 69.54	0	1387180..1387527	-	115	77463288	-	RSP_2737	-	putative ssRNA endoribonuclease L-PSP
1324	 69.83	0	1387846..1388793	+	315	77463289	-	RSP_2738	-	rhodanese-related sulfurtransferase
1325	 73.85	+1	1388804..1389931	+	375	77463290	-	RSP_2739	-	hypothetical protein
1326	 75.00	+1	1389928..1390095	+	55	77463291	-	RSP_6066	-	hypothetical protein
1327	 65.55	0	1390370..1391626	+	418	77463292	-	RSP_2740	-	putative glucose/sorbosone dehydrogenase
1328	 71.02	0	1391623..1392219	+	198	77463293	-	RSP_2741	-	class I diheme cytochrome c4
1329	 68.18	0	1392245..1392574	-	109	77463294	-	RSP_6067	-	hypothetical protein
1330	 67.90	0	1392722..1393936	+	404	77463295	-	RSP_2742	-	hypothetical protein
1331	 70.83	0	1393970..1394737	-	255	77463296	-	RSP_2744	-	hypothetical protein
1332	 68.63	0	1394903..1395871	+	322	77463297	-	RSP_2745	-	hypothetical protein
1333	 72.38	0	1395862..1396806	-	314	77463298	-	RSP_2746	-	hypothetical protein
1334	 71.03	0	1396918..1398246	-	442	77463299	-	RSP_2747	-	glycosyltransferase
1335	 66.16	0	1398481..1398876	-	131	77463300	-	RSP_2748	-	CopG family transcriptional regulator
1336	 71.52	0	1399432..1400751	+	439	77463301	-	RSP_2749	-	P4 family integrase
1337	 64.05	-1	1401018..1401476	+	152	77463302	-	RSP_2750	-	hypothetical protein
1338	 65.22	0	1401473..1402648	+	391	77463303	-	RSP_2751	-	hypothetical protein
1339	 68.27	0	1402642..1403139	+	165	77463304	-	RSP_2753	-	hypothetical protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.