IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1201	 68.83	0	1252715..1253686	-	323	77463166	fabH	RSP_2612	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1202	 68.28	0	1253693..1254805	-	370	77463167	plsX	RSP_2613	-	putative glycerol-3-phosphate acyltransferase PlsX
1203	 67.15	0	1254831..1255037	-	68	77463168	rpmF	RSP_2614	-	50S ribosomal protein L32
1204	 74.58	+1	1255215..1255808	-	197	77463169	-	RSP_2615	-	hypothetical protein
1205	 67.27	0	1256030..1256527	+	165	77463170	-	RSP_2616	-	hypothetical protein
1206	 67.41	0	1256620..1257024	-	134	77463171	-	RSP_2617	-	peptide methionine sulfoxide reductase
1207	 71.18	0	1257131..1257883	+	250	77463172	-	RSP_2618	-	ornithine-acyl[acyl carrier protein] N-acyltransferase
1208	 69.91	0	1257890..1259029	-	379	77463173	trmU	RSP_2619	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1209	 65.95	0	1259153..1259431	+	92	77463174	-	RSP_2620	-	hypothetical protein
1210	 60.64	-1	1259527..1260240	+	237	77463175	ctrA	RSP_2621	-	two component transcriptional regulator
1211	 70.35	0	1260334..1262448	+	704	77463176	ligA	RSP_2622	-	DNA ligase
1212	 72.22	0	1262445..1264532	+	695	77463177	recG	RSP_2623N	-	heme peroxidase
1213	 60.16	-2	1264784..1264906	+	40	77463178	-	RSP_2624	-	hypothetical protein
1214	 71.43	0	1265057..1265497	-	146	77463179	nifU	RSP_2625	-	NifU-related protein involved in Fe-S cluster formation
1215	 67.50	0	1265563..1265922	+	119	77463180	hisI	RSP_2627	-	phosphoribosyl-AMP cyclohydrolase
1216	 73.26	+1	1266116..1266949	-	277	77463181	gltX/glnS	RSP_2628	-	glutamyl-/ glutaminyl-tRNA synthetase
1217	 67.49	0	1266934..1268268	-	444	77463182	gid	RSP_2629	-	tRNA (uracil-5-)-methyltransferase Gid
1218	 67.22	0	1268272..1270995	-	907	77463183	gyrA	RSP_2630	-	DNA gyrase subunit A
1219	 60.98	-1	1271238..1271501	+	87	77463184	-	RSP_2631	-	USG protein
1220	 70.77	0	1271615..1272541	-	308	77463185	argI	RSP_2632	-	arginase
1221	 69.91	0	1273029..1274999	+	656	77463186	ccmF	RSP_2633	-	cytochrome c maturation protein, CcmF
1222	 71.05	0	1274996..1275451	+	151	77463187	ccmH	RSP_2634	-	cytochrome c maturation protein, CcmH
1223	 67.56	0	1276339..1276899	-	186	77463188	ilvH	RSP_2636	-	acetolactate synthase 3 regulatory subunit
1224	 66.27	0	1276982..1278748	-	588	77463189	-	RSP_2637	-	acetolactate synthase 3 catalytic subunit
1225	 66.67	0	1279043..1279960	-	305	77463190	-	RSP_2638	-	putative sodium/calcium exchanger
1226	 67.14	0	1280450..1281292	-	280	77463191	-	RSP_2639	-	arginyl-tRNA-protein transferase
1227	 67.99	0	1281399..1281851	-	150	77463192	-	RSP_2640	-	hypothetical protein
1228	 68.37	0	1282161..1282571	-	136	77463193	-	RSP_2641	-	hypothetical protein
1229	 72.82	0	1283010..1283480	-	156	77463194	-	RSP_2642	-	hypothetical protein
1230	 72.14	0	1283622..1286471	+	949	77463195	glnE	RSP_2643	-	glutamate-ammonia-ligase adenylyltransferase
1231	 74.81	+1	1286458..1286727	+	89	77463196	-	RSP_2644	-	hypothetical protein
1232	 74.02	+1	1286934..1287572	-	212	77463197	eda	RSP_2645	-	2-keto-3-deoxy-phosphogluconate aldolase
1233	 72.71	0	1290283..1291473	+	396	77463198	-	RSP_2647	-	SAM-dependent methyltransferase
1234	 73.30	+1	1291470..1292012	+	180	77463199	-	RSP_2648	-	hypothetical protein
1235	 67.39	0	1292063..1292749	-	228	77463200	-	RSP_2649	-	putative Zn-dependent protease
1236	 66.75	0	1292812..1293996	-	394	77463201	-	RSP_2650	-	hypothetical protein
1237	 70.91	0	1294019..1294183	-	54	77463202	-	RSP_6205	-	hypothetical protein
1238	 70.58	0	1294180..1295583	-	467	77463203	-	RSP_2651	-	hypothetical protein
1239	 70.86	0	1295580..1296032	-	150	77463204	-	RSP_2652	-	putative acetyltransferase
1240	 64.64	0	1296071..1296910	-	279	77463205	-	RSP_2653	-	AAA family ATPase
1241	 63.52	-1	1297043..1297519	+	158	77463206	-	RSP_2654	-	DnaK suppressor protein
1242	 71.60	0	1297615..1298790	+	391	77463207	nahG	RSP_2656	-	putative salicylate hydroxylase (salicylate 1-monooxygenase)
1243	 71.68	0	1298787..1299185	-	132	77463208	-	RSP_2655	-	hypothetical protein
1244	 68.59	0	1299328..1300107	-	259	77463209	xthA	RSP_2657	-	exodeoxyribonuclease III
1245	 63.61	-1	1300184..1300510	-	108	77463210	-	RSP_2658	-	HesB/YadR/YfhF family protein
1246	 67.55	0	1300585..1301721	+	378	77463211	dgt	RSP_2659	-	deoxyguanosinetriphosphate triphosphohydrolase
1247	 67.29	0	1301738..1302859	+	373	77463212	-	RSP_2660	-	ribonuclease BN family protein
1248	 76.55	+1	1302865..1304007	-	380	77463213	-	RSP_2661	-	Iron-containing alcohol dehydrogenase
1249	 70.78	0	1304004..1305485	-	493	77463214	glpK	RSP_2662	-	glycerol kinase
1250	 66.14	0	1305874..1307598	-	574	77463215	-	RSP_2663	-	ABC sugar (glycerol) transporter, periplasmic binding protein
1251	 69.23	0	1307660..1307932	-	90	77463216	-	RSP_2664	-	hypothetical protein
1252	 62.56	-1	1307934..1308737	-	267	77463217	-	RSP_2665	-	ABC sugar (glycerol) transporter, inner membrane subunit
1253	 62.77	-1	1308775..1309647	-	290	77463218	-	RSP_2666	-	ABC sugar (glycerol) transporter, inner membrane subunit
1254	 67.86	0	1309647..1310732	-	361	77463219	-	RSP_2667	-	ABC sugar (glycerol) transporter, ATPase subunit
1255	 69.70	0	1310743..1311831	-	362	77463220	-	RSP_2669	-	ABC sugar (glycerol) transporter, ATPase subunit
1256	 70.25	0	1311961..1313580	-	539	77463221	glpD	RSP_2670	-	glycerol-3-phosphate dehydrogenase
1257	 66.30	0	1314041..1314316	-	91	77463222	-	RSP_2671	-	hypothetical protein
1258	 74.44	+1	1314483..1314842	+	119	77463223	-	RSP_2672	-	hypothetical protein
1259	 68.71	0	1314937..1317282	-	781	77463224	-	RSP_2673	-	quinoprotein glucose dehydrogenase
1260	 62.64	-1	1317485..1317832	-	115	77463225	-	RSP_2674	-	hypothetical protein
1261	 73.33	+1	1318469..1319263	-	264	77463226	-	RSP_2675	-	hypothetical protein
1262	 71.05	0	1319386..1320297	-	303	77463227	-	RSP_2676	-	hypothetical protein
1263	 66.67	0	1321303..1321683	-	126	77463228	-	RSP_6064	-	response regulator receiver domain-containing protein
1264	 68.66	0	1321994..1322746	+	250	77463229	-	RSP_2677	-	Mg2+ transporter
1265	 71.37	0	1322934..1323188	-	84	77463230	-	RSP_2678	-	hypothetical protein
1266	 71.15	0	1323185..1325791	-	868	77463231	-	RSP_2679	-	ATP-dependent DNA ligase
1267	 65.74	0	1326562..1326777	-	71	77463232	-	RSP_6225	-	hypothetical protein
1268	 66.86	0	1326905..1327411	+	168	77463233	rpoE	RSP_2681	-	sigma factor, RpoE
1269	 70.85	0	1327641..1328573	+	310	77463234	fabD	RSP_2682	-	[Acyl-carrier-protein] S-malonyltransferase
1270	 72.29	0	1328804..1329034	-	76	77463235	-	RSP_2683	-	hypothetical protein
1271	 70.81	0	1329031..1329513	-	160	77463236	-	RSP_2684	-	putative endonuclease involved in recombination
1272	 73.52	+1	1329510..1330763	-	417	77463237	-	RSP_2685	-	putative cytochrome c-type biogenesis protein, cycH
1273	 66.67	0	1330960..1332207	+	415	77463238	-	RSP_2686	-	putative sarcosine oxidase beta subunit
1274	 63.47	-1	1332287..1332661	+	124	77463239	fbcQ	RSP_2687	-	cytochrome b-c1 subunit IV
1275	 63.58	-1	1332701..1333024	+	107	77463240	soxD	RSP_2688	-	putative sarcosine oxidase delta subunit protein
1276	 70.22	0	1333021..1336002	+	993	77463241	soxA	RSP_2689	-	putative sarcosine oxidase, alpha subunit
1277	 70.79	0	1335995..1336552	+	185	77463242	-	RSP_2690	-	putative sarcosine oxidase gamma subunit
1278	 68.16	0	1336565..1338508	-	647	77463243	-	RSP_2692	-	acyltransferase domain-containing protein
1279	 62.00	-1	1338764..1339363	+	199	77463244	-	RSP_2693	-	Fe/Mn family superoxide dismutase
1280	 67.75	0	1339516..1340070	-	184	77463245	-	RSP_2694	-	hypothetical protein
1281	 73.54	+1	1340171..1341493	+	440	77463246	-	RSP_2695	-	peptidoglycan-binding protein
1282	 67.92	0	1341579..1343417	+	612	77463247	-	RSP_2696	-	ABC transporter, fused ATPase and inner membrane subunits
1283	 72.07	0	1343517..1344164	+	215	77463248	-	RSP_2697	-	hypothetical protein
1284	 72.53	0	1344210..1345556	+	448	77463249	-	RSP_2698	-	putative quinoprotein
1285	 67.96	0	1345615..1347078	+	487	77463250	engA	RSP_2699	-	GTP-binding protein EngA
1286	 73.69	+1	1347320..1349299	-	659	77463251	-	RSP_2700	-	ABC oligo/dipeptide transporter, fused ATPase subunits
1287	 71.43	0	1349292..1350446	-	384	77463252	-	RSP_2701	-	ABC oligo/dipeptide transporter, inner membrane subunit
1288	 70.27	0	1350446..1351471	-	341	77463253	-	RSP_2702	-	ABC oligo/dipeptide transporter, inner membrane subunit
1289	 65.80	0	1351475..1352980	-	501	77463254	-	RSP_2703	-	ABC dipeptide transporter, periplasmic binding protein
1290	 71.75	0	1353302..1354246	-	314	77463255	miaA	RSP_2704	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1291	 65.32	0	1354336..1355076	+	246	77463256	pyrH	RSP_2705	-	uridylate kinase
1292	 64.37	-1	1355162..1355728	+	188	77463257	frr	RSP_2706	-	ribosome recycling factor
1293	 70.16	0	1355798..1356541	+	247	77463258	uppS	RSP_2707	-	undecaprenyl pyrophosphate synthetase
1294	 68.61	0	1356538..1357359	+	273	77463259	cdsA	RSP_2708	-	phosphatidate cytidylyltransferase
1295	 69.70	0	1357368..1358552	+	394	77463260	dxr	RSP_2709	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1296	 68.39	0	1358559..1359893	+	444	77463261	-	RSP_2710	-	putative membrane-associated zinc metalloprotease
1297	 64.49	-1	1360060..1360197	+	45	77463262	-	RSP_6065	-	hypothetical protein
1298	 66.38	0	1360291..1362690	+	799	77463263	-	RSP_2711	-	putative outer membrane protein
1299	 74.31	+1	1362690..1363382	+	230	77463264	-	RSP_6204	-	hypothetical protein
1300	 64.74	0	1363468..1363935	+	155	77463265	fabZ	RSP_2712	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.