IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1114	 68.61	0	1165904..1166314	+	136	77463079	-	RSP_2520	-	hypothetical protein
1115	 63.20	-1	1166342..1167379	+	345	77463080	nuoH	RSP_2522	-	NADH dehydrogenase subunit H
1116	 64.09	-1	1167381..1167884	+	167	77463081	nuoI	RSP_2523	-	NADH dehydrogenase subunit I
1117	 63.02	-1	1167881..1168291	+	136	77463082	-	RSP_2524	-	carboxymuconolactone decarboxylase family protein
1118	 65.85	0	1168288..1168902	+	204	77463083	nuoJ	RSP_2525	-	NADH dehydrogenase subunit J
1119	 60.78	-1	1169062..1169367	+	101	77463084	nuoK	RSP_2526	-	NADH dehydrogenase subunit K
1120	 65.83	0	1169373..1171535	+	720	77463085	nuoL	RSP_2527	-	NADH dehydrogenase subunit L
1121	 64.20	-1	1171535..1173076	+	513	77463086	nuoM	RSP_2529	-	NADH dehydrogenase subunit M
1122	 66.46	0	1173087..1174523	+	478	77463087	nuoN	RSP_2530	-	NADH dehydrogenase subunit N
1123	 73.25	+1	1174540..1175268	+	242	77463088	birA	RSP_2532	-	putative biotin protein ligase
1124	 64.47	-1	1175279..1176052	+	257	77463089	-	RSP_2533	-	pantothenate kinase
1125	 68.10	0	1176049..1177722	+	557	77463090	-	RSP_2534	-	metallo-beta-lactamase superfamily hydrolase
1126	 69.11	0	1178520..1180076	-	518	77463091	rhlE	RSP_2536	-	ATP-dependent helicase, DEAD-box
1127	 66.42	0	1180302..1181906	-	534	77463092	prfC	RSP_2537	-	peptide chain release factor 3
1128	 71.67	0	1182066..1182845	+	259	77463093	fabG	RSP_2538	-	Short-chain dehydrogenase/reductase
1129	 70.36	0	1182882..1184018	+	378	77463094	-	RSP_2539	-	ABC transporter, ATPase subunit
1130	 61.50	-1	1184186..1184398	+	70	77463095	tatA	RSP_2540	-	twin-arginine translocation system protein, TatA
1131	 71.70	0	1184409..1184885	+	158	77463096	tatB	RSP_6059	-	twin-arginine translocation system protein, TatB
1132	 63.10	-1	1184882..1185751	+	289	77463097	tatC	RSP_2541	-	twin-arginine translocation system protein, TatC
1133	 68.45	0	1185748..1186587	+	279	77463098	-	RSP_2542	-	ATPase
1134	 72.50	0	1186682..1187881	-	399	77463099	-	RSP_2543	-	peptidoglycan-binding LysM ( peptidase)
1135	 68.33	0	1188005..1188664	-	219	77463100	-	RSP_2544	-	protein-L-isoaspartate O-methyltransferase
1136	 71.25	0	1188661..1189446	-	261	77463101	surE	RSP_2545	-	5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase
1137	 69.93	0	1190333..1190944	+	203	77463102	exoY	RSP_2547	-	exopolysaccharide production protein exoY
1138	 69.99	0	1191016..1192248	+	410	77463103	exoF	RSP_2548	-	Outer membrane polysaccharide export protein, exoF
1139	 69.46	0	1192424..1193713	-	429	77463104	exoQ	RSP_2549	-	putative polysaccharide polymerase
1140	 65.01	0	1193730..1194512	-	260	77463105	exoK	RSP_2550	-	endo-beta-1,3-1,4-glycanase protein
1141	 72.75	0	1194718..1196148	+	476	77463106	exoO	RSP_2551	-	glycosyl transferase family protein
1142	 72.10	0	1196164..1197120	-	318	77463107	exoU	RSP_2552	-	glycosyl transferase family protein
1143	 72.47	0	1197117..1198253	-	378	77463108	-	RSP_2553	-	hypothetical protein
1144	 63.40	-1	1198599..1198751	+	50	77463109	-	RSP_2554	-	hypothetical protein
1145	 64.75	0	1198838..1199098	+	86	77463110	-	RSP_2555	-	hypothetical protein
1146	 72.78	0	1199109..1199582	+	157	77463111	-	RSP_2556	-	hypothetical protein
1147	 72.73	0	1199579..1201459	+	626	77463112	asnB	RSP_2557	-	putative asparagine synthetase
1148	 72.75	0	1201456..1202376	+	306	77463113	-	RSP_2558	-	Hpr(Ser) kinase/phosphatase
1149	 69.74	0	1202442..1204229	+	595	77463114	-	RSP_2559	-	ABC transporter, fused ATPase and inner membrane subunits
1150	 62.79	-1	1204363..1204620	-	85	77463115	-	RSP_6060	-	hypothetical protein
1151	 68.61	0	1204993..1207308	-	771	77463116	exoP	RSP_2561	-	putative succinoglycan biosynthesis transport protein ExoP
1152	 69.11	0	1207359..1208339	-	326	77463117	exoM	RSP_2562	-	succinoglycan biosynthesis protein exoM
1153	 70.10	0	1208336..1209325	-	329	77463118	exoA	RSP_2563	-	glycosyl transferase family protein
1154	 70.94	0	1209322..1210491	-	389	77463119	exoL	RSP_2564	-	glycosyltransferase, succinoglycan biosynthesis protein exoL
1155	 68.37	0	1210513..1211451	-	312	77463120	ugpG	RSP_2565	-	UDP-glucose pyrophosphorylase
1156	 71.69	0	1211807..1212622	-	271	77463121	sqdC	RSP_2567	-	putative sulfolipid biosynthesis protein
1157	 67.82	0	1212607..1213389	-	260	77463122	sqdD	RSP_2568	-	glycosyl transferase (sulfolipid biosynthesis) protein
1158	 64.94	0	1213444..1214658	-	404	77463123	sqdB	RSP_2569	-	UDP-sulfoquinovose synthase
1159	 68.42	0	1214805..1215374	-	189	77463124	pfpI	RSP_2570	-	protease I
1160	 70.42	0	1215772..1216809	+	345	77463125	-	RSP_2571	-	putative oxidoreductase protein
1161	 67.05	0	1216964..1217755	+	263	77463126	crpK	RSP_2572	-	crpK, Fnr-type transcriptional regulator
1162	 71.41	0	1217909..1218667	+	252	77463127	-	RSP_2573	-	hypothetical protein
1163	 68.70	0	1218791..1219282	-	163	77463128	-	RSP_2574	-	hypothetical protein
1164	 67.51	0	1219513..1220103	+	196	77463129	-	RSP_2575	-	glutathione-dependent formaldehyde-activating enzyme
1165	 66.31	0	1220336..1221466	+	376	77463130	adhI	RSP_2576	-	alcohol dehydrogenase class III
1166	 69.43	0	1221596..1222030	+	144	77463131	cycI	RSP_2577	-	isocytochrome c2
1167	 64.67	0	1222240..1224042	+	600	77463132	xoxF	RSP_2578	-	putative PQQ dehydrogenase protein
1168	 67.04	0	1224206..1224736	+	176	77463133	cycB	RSP_2579	-	cytochrome c553i
1169	 69.21	0	1224724..1225548	+	274	77463134	xoxJ	RSP_2580	-	putative methanol oxidation protein
1170	 70.64	0	1225545..1226072	+	175	77463135	-	RSP_2581	-	rhodanese
1171	 70.00	0	1226181..1227290	+	369	77463136	-	RSP_2582	-	hypothetical protein
1172	 65.39	0	1227335..1228273	+	312	77463137	-	RSP_2583	-	hypothetical protein
1173	 66.44	0	1228300..1228743	+	147	77463138	-	RSP_2584	-	hypothetical protein
1174	 62.25	-1	1228759..1229007	+	82	77463139	-	RSP_2585	-	hypothetical protein
1175	 73.80	+1	1229004..1229732	+	242	77463140	-	RSP_2586	-	ABC multidrug efflux transporter, ATPase subunit
1176	 67.25	0	1229729..1230589	+	286	77463141	-	RSP_2587	-	ABC multidrug efflux transporter, inner membrane subunit
1177	 69.53	0	1230599..1231192	+	197	77463142	-	RSP_2588	-	hypothetical protein
1178	 72.05	0	1231337..1232431	-	364	77463143	-	RSP_2589	-	hypothetical protein
1179	 68.15	0	1232486..1233292	+	268	77463144	-	RSP_2590	-	hypothetical protein
1180	 67.80	0	1233459..1234166	+	235	77463145	flhR	RSP_2591	-	two component LuxR family transcriptional regulator
1181	 72.18	0	1234177..1235337	+	386	77463146	-	RSP_2592	-	hypothetical protein
1182	 71.55	0	1235327..1236760	+	477	77463147	flhS	RSP_2593	-	hybrid histidine kinase
1183	 73.01	+1	1236765..1237379	+	204	77463148	-	RSP_2594	-	hypothetical protein
1184	 72.02	0	1237376..1237879	+	167	77463149	-	RSP_2595	-	hypothetical protein
1185	 71.65	0	1237977..1238759	-	260	77463150	-	RSP_2596	-	ABC transporter, ATPase subunit
1186	 68.81	0	1238756..1239736	-	326	77463151	-	RSP_2597	-	ABC transporter, periplasmic substrate-binding protein
1187	 70.91	0	1239756..1240556	-	266	77463152	-	RSP_2598	-	ABC transporter, inner membrane subunit
1188	 68.69	0	1240670..1241362	-	230	77463153	phoB	RSP_2599	-	phosphate regulon transcriptional regulator, PhoR
1189	 65.98	0	1241362..1242087	-	241	77463154	phoU	RSP_2600	-	phosphate uptake regulator, PhoU
1190	 67.29	0	1242098..1242895	-	265	77463155	pstB	RSP_2601	-	ABC phosphate transporter, ATPase subunit PstB
1191	 69.70	0	1242906..1244255	-	449	77463156	pstA	RSP_2602	-	ABC phosphate transporter, inner membrane subunit PstA
1192	 69.99	0	1244252..1245697	-	481	77463157	pstC	RSP_2603	-	ABC phosphate transporter, inner membrane subunit PstC
1193	 65.90	0	1245756..1246799	-	347	77463158	pstS	RSP_2604	-	ABC phosphate transporter, periplasmic phosphate-binding protein
1194	 70.43	0	1247175..1247864	-	229	77463159	-	RSP_2605	-	hypothetical protein
1195	 66.93	0	1247875..1248258	-	127	77463160	-	RSP_2606	-	ArsR family transcriptional regulator
1196	 72.26	0	1248295..1248795	-	166	77463161	-	RSP_2607	-	nitrilotriacetate monooxygenase component B
1197	 68.78	0	1249031..1250026	+	331	77463162	corA	RSP_2608	-	Mg2+/Co2+ transporter
1198	 69.55	0	1250170..1251246	-	358	77463163	dcd	RSP_2609	-	2'-deoxycytidine 5'-triphosphate deaminase
1199	 74.00	+1	1251470..1252315	-	281	77463164	-	RSP_2610	-	MerR family transcriptional regulator
1200	 65.35	0	1252322..1252624	-	100	77463165	ihfA	RSP_2611	-	histone-like DNA-binding protein (IHF)
1201	 68.83	0	1252715..1253686	-	323	77463166	fabH	RSP_2612	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1202	 68.28	0	1253693..1254805	-	370	77463167	plsX	RSP_2613	-	putative glycerol-3-phosphate acyltransferase PlsX
1203	 67.15	0	1254831..1255037	-	68	77463168	rpmF	RSP_2614	-	50S ribosomal protein L32
1204	 74.58	+1	1255215..1255808	-	197	77463169	-	RSP_2615	-	hypothetical protein
1205	 67.27	0	1256030..1256527	+	165	77463170	-	RSP_2616	-	hypothetical protein
1206	 67.41	0	1256620..1257024	-	134	77463171	-	RSP_2617	-	peptide methionine sulfoxide reductase
1207	 71.18	0	1257131..1257883	+	250	77463172	-	RSP_2618	-	ornithine-acyl[acyl carrier protein] N-acyltransferase
1208	 69.91	0	1257890..1259029	-	379	77463173	trmU	RSP_2619	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1209	 65.95	0	1259153..1259431	+	92	77463174	-	RSP_2620	-	hypothetical protein
1210	 60.64	-1	1259527..1260240	+	237	77463175	ctrA	RSP_2621	-	two component transcriptional regulator
1211	 70.35	0	1260334..1262448	+	704	77463176	ligA	RSP_2622	-	DNA ligase
1212	 72.22	0	1262445..1264532	+	695	77463177	recG	RSP_2623N	-	heme peroxidase
1213	 60.16	-2	1264784..1264906	+	40	77463178	-	RSP_2624	-	hypothetical protein
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.