IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1076	 66.74	0	1122984..1124375	-	463	77463041	pdhAb	RSP_4049	-	pyruvate dehydrogenase subunit beta
1077	 65.15	0	1124389..1125378	-	329	77463042	pdhAa	RSP_4047	-	pyruvate dehydrogenase E1 component, alpha subunit
1078	 66.01	0	1125601..1125903	-	100	77463043	-	RSP_4046	-	hypothetical protein
1079	 66.56	0	1126182..1127111	-	309	77463044	fbaB	RSP_4045	-	fructose-bisphosphate aldolase
1080	 68.68	0	1127213..1128406	-	397	77463045	pgk	RSP_4044	-	phosphoglycerate kinase
1081	 64.90	0	1128555..1129064	+	169	77463046	-	RSP_4043	-	peptidylprolyl isomerase
1082	 68.69	0	1129054..1129647	+	197	77463047	-	RSP_4042	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1083	 66.19	0	1129891..1131141	-	416	77463048	tyrS	RSP_4041	-	tyrosyl-tRNA synthetase
1084	 74.91	+1	1131217..1132332	+	371	77463049	anmK	RSP_6056	-	anhydro-N-acetylmuramic acid kinase
1085	 74.23	+1	1132370..1132792	-	140	77463050	-	RSP_2490	-	hypothetical protein
1086	 68.78	0	1132955..1133191	+	78	77463051	-	RSP_6057	-	hypothetical protein
1087	 65.41	0	1133262..1134539	-	425	77463052	eno	RSP_2491	-	enolase
1088	 70.40	0	1134574..1135458	-	294	77463053	-	RSP_2492	-	RhaT family protein
1089	 67.39	0	1135523..1135936	-	137	77463054	fur	RSP_2494	-	FUR family manganese uptake regulator
1090	 66.20	0	1136518..1140174	+	1218	77463055	nrd	RSP_2495	-	ribonucleotide-diphosphate reductase subunit alpha
1091	 66.47	0	1140547..1141047	+	166	77463056	-	RSP_2496	-	hypothetical protein
1092	 64.37	-1	1141281..1141934	-	217	77463057	-	RSP_2497	-	ATPase
1093	 66.08	0	1143090..1144292	+	400	77463058	-	RSP_2500	-	hypothetical protein
1094	 71.31	0	1144947..1145786	-	279	77463059	-	RSP_2501	-	hypothetical protein
1095	 68.98	0	1146147..1147958	-	603	77463060	glmS	RSP_2502	-	D-fructose-6-phosphate amidotransferase
1096	 69.30	0	1147958..1149322	-	454	77463061	glmU	RSP_2503	-	UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase
1097	 70.14	0	1149423..1150112	+	229	77463062	gph	RSP_2504	-	phosphoglycolate phosphatase
1098	 66.84	0	1150144..1150704	-	186	77463063	creA	RSP_2505	-	CreA family protein
1099	 66.58	0	1150728..1151885	+	385	77463064	ivdH	RSP_2506	-	isovaleryl-CoA dehydrogenase
1100	 65.20	0	1151976..1152587	-	203	77463065	ompW	RSP_2507	-	outer membrane protein
1101	 70.48	0	1152653..1154329	+	558	77463066	mccB	RSP_2508	-	methylcrotonyl-CoA carboxylase beta chain
1102	 73.62	+1	1154426..1156366	+	646	77463067	mccA	RSP_2509	-	3-methylcrotonoyl-CoA carboxylase, alpha subunit
1103	 73.90	+1	1156359..1157243	+	294	77463068	hmgL	RSP_2510	-	hydroxymethylglutaryl-CoA lyase
1104	 72.62	0	1157256..1158044	+	262	77463069	-	RSP_2511	-	enoyl-CoA hydratase
1105	 59.84	-2	1158265..1158630	+	121	77463070	nuoA	RSP_2512	-	NADH dehydrogenase subunit A
1106	 67.24	0	1158627..1159151	+	174	77463071	nuoB	RSP_2513	-	NADH dehydrogenase subunit B
1107	 64.84	0	1159162..1159764	+	200	77463072	nuoC	RSP_2514	-	NADH dehydrogenase subunit C
1108	 65.27	0	1159769..1160983	+	404	77463073	nuoD	RSP_2515	-	NADH dehydrogenase subunit D
1109	 70.07	0	1160983..1161894	+	303	77463074	nuoE	RSP_2516	-	NADH dehydrogenase subunit E
1110	 69.95	0	1161894..1162106	+	70	77463075	-	RSP_2517	-	hypothetical protein
1111	 67.28	0	1162117..1163412	+	431	77463076	nuoF	RSP_2518	-	NADH dehydrogenase I subunit F
1112	 78.89	+2	1163417..1163776	+	119	77463077	-	RSP_2519	-	hypothetical protein
1113	 69.57	0	1163936..1165900	+	654	77463078	nuoG	RSP_2521	-	NADH dehydrogenase subunit G
1114	 68.61	0	1165904..1166314	+	136	77463079	-	RSP_2520	-	hypothetical protein
1115	 63.20	-1	1166342..1167379	+	345	77463080	nuoH	RSP_2522	-	NADH dehydrogenase subunit H
1116	 64.09	-1	1167381..1167884	+	167	77463081	nuoI	RSP_2523	-	NADH dehydrogenase subunit I
1117	 63.02	-1	1167881..1168291	+	136	77463082	-	RSP_2524	-	carboxymuconolactone decarboxylase family protein
1118	 65.85	0	1168288..1168902	+	204	77463083	nuoJ	RSP_2525	-	NADH dehydrogenase subunit J
1119	 60.78	-1	1169062..1169367	+	101	77463084	nuoK	RSP_2526	-	NADH dehydrogenase subunit K
1120	 65.83	0	1169373..1171535	+	720	77463085	nuoL	RSP_2527	-	NADH dehydrogenase subunit L
1121	 64.20	-1	1171535..1173076	+	513	77463086	nuoM	RSP_2529	-	NADH dehydrogenase subunit M
1122	 66.46	0	1173087..1174523	+	478	77463087	nuoN	RSP_2530	-	NADH dehydrogenase subunit N
1123	 73.25	+1	1174540..1175268	+	242	77463088	birA	RSP_2532	-	putative biotin protein ligase
1124	 64.47	-1	1175279..1176052	+	257	77463089	-	RSP_2533	-	pantothenate kinase
1125	 68.10	0	1176049..1177722	+	557	77463090	-	RSP_2534	-	metallo-beta-lactamase superfamily hydrolase
1126	 69.11	0	1178520..1180076	-	518	77463091	rhlE	RSP_2536	-	ATP-dependent helicase, DEAD-box
1127	 66.42	0	1180302..1181906	-	534	77463092	prfC	RSP_2537	-	peptide chain release factor 3
1128	 71.67	0	1182066..1182845	+	259	77463093	fabG	RSP_2538	-	Short-chain dehydrogenase/reductase
1129	 70.36	0	1182882..1184018	+	378	77463094	-	RSP_2539	-	ABC transporter, ATPase subunit
1130	 61.50	-1	1184186..1184398	+	70	77463095	tatA	RSP_2540	-	twin-arginine translocation system protein, TatA
1131	 71.70	0	1184409..1184885	+	158	77463096	tatB	RSP_6059	-	twin-arginine translocation system protein, TatB
1132	 63.10	-1	1184882..1185751	+	289	77463097	tatC	RSP_2541	-	twin-arginine translocation system protein, TatC
1133	 68.45	0	1185748..1186587	+	279	77463098	-	RSP_2542	-	ATPase
1134	 72.50	0	1186682..1187881	-	399	77463099	-	RSP_2543	-	peptidoglycan-binding LysM ( peptidase)
1135	 68.33	0	1188005..1188664	-	219	77463100	-	RSP_2544	-	protein-L-isoaspartate O-methyltransferase
1136	 71.25	0	1188661..1189446	-	261	77463101	surE	RSP_2545	-	5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase
1137	 69.93	0	1190333..1190944	+	203	77463102	exoY	RSP_2547	-	exopolysaccharide production protein exoY
1138	 69.99	0	1191016..1192248	+	410	77463103	exoF	RSP_2548	-	Outer membrane polysaccharide export protein, exoF
1139	 69.46	0	1192424..1193713	-	429	77463104	exoQ	RSP_2549	-	putative polysaccharide polymerase
1140	 65.01	0	1193730..1194512	-	260	77463105	exoK	RSP_2550	-	endo-beta-1,3-1,4-glycanase protein
1141	 72.75	0	1194718..1196148	+	476	77463106	exoO	RSP_2551	-	glycosyl transferase family protein
1142	 72.10	0	1196164..1197120	-	318	77463107	exoU	RSP_2552	-	glycosyl transferase family protein
1143	 72.47	0	1197117..1198253	-	378	77463108	-	RSP_2553	-	hypothetical protein
1144	 63.40	-1	1198599..1198751	+	50	77463109	-	RSP_2554	-	hypothetical protein
1145	 64.75	0	1198838..1199098	+	86	77463110	-	RSP_2555	-	hypothetical protein
1146	 72.78	0	1199109..1199582	+	157	77463111	-	RSP_2556	-	hypothetical protein
1147	 72.73	0	1199579..1201459	+	626	77463112	asnB	RSP_2557	-	putative asparagine synthetase
1148	 72.75	0	1201456..1202376	+	306	77463113	-	RSP_2558	-	Hpr(Ser) kinase/phosphatase
1149	 69.74	0	1202442..1204229	+	595	77463114	-	RSP_2559	-	ABC transporter, fused ATPase and inner membrane subunits
1150	 62.79	-1	1204363..1204620	-	85	77463115	-	RSP_6060	-	hypothetical protein
1151	 68.61	0	1204993..1207308	-	771	77463116	exoP	RSP_2561	-	putative succinoglycan biosynthesis transport protein ExoP
1152	 69.11	0	1207359..1208339	-	326	77463117	exoM	RSP_2562	-	succinoglycan biosynthesis protein exoM
1153	 70.10	0	1208336..1209325	-	329	77463118	exoA	RSP_2563	-	glycosyl transferase family protein
1154	 70.94	0	1209322..1210491	-	389	77463119	exoL	RSP_2564	-	glycosyltransferase, succinoglycan biosynthesis protein exoL
1155	 68.37	0	1210513..1211451	-	312	77463120	ugpG	RSP_2565	-	UDP-glucose pyrophosphorylase
1156	 71.69	0	1211807..1212622	-	271	77463121	sqdC	RSP_2567	-	putative sulfolipid biosynthesis protein
1157	 67.82	0	1212607..1213389	-	260	77463122	sqdD	RSP_2568	-	glycosyl transferase (sulfolipid biosynthesis) protein
1158	 64.94	0	1213444..1214658	-	404	77463123	sqdB	RSP_2569	-	UDP-sulfoquinovose synthase
1159	 68.42	0	1214805..1215374	-	189	77463124	pfpI	RSP_2570	-	protease I
1160	 70.42	0	1215772..1216809	+	345	77463125	-	RSP_2571	-	putative oxidoreductase protein
1161	 67.05	0	1216964..1217755	+	263	77463126	crpK	RSP_2572	-	crpK, Fnr-type transcriptional regulator
1162	 71.41	0	1217909..1218667	+	252	77463127	-	RSP_2573	-	hypothetical protein
1163	 68.70	0	1218791..1219282	-	163	77463128	-	RSP_2574	-	hypothetical protein
1164	 67.51	0	1219513..1220103	+	196	77463129	-	RSP_2575	-	glutathione-dependent formaldehyde-activating enzyme
1165	 66.31	0	1220336..1221466	+	376	77463130	adhI	RSP_2576	-	alcohol dehydrogenase class III
1166	 69.43	0	1221596..1222030	+	144	77463131	cycI	RSP_2577	-	isocytochrome c2
1167	 64.67	0	1222240..1224042	+	600	77463132	xoxF	RSP_2578	-	putative PQQ dehydrogenase protein
1168	 67.04	0	1224206..1224736	+	176	77463133	cycB	RSP_2579	-	cytochrome c553i
1169	 69.21	0	1224724..1225548	+	274	77463134	xoxJ	RSP_2580	-	putative methanol oxidation protein
1170	 70.64	0	1225545..1226072	+	175	77463135	-	RSP_2581	-	rhodanese
1171	 70.00	0	1226181..1227290	+	369	77463136	-	RSP_2582	-	hypothetical protein
1172	 65.39	0	1227335..1228273	+	312	77463137	-	RSP_2583	-	hypothetical protein
1173	 66.44	0	1228300..1228743	+	147	77463138	-	RSP_2584	-	hypothetical protein
1174	 62.25	-1	1228759..1229007	+	82	77463139	-	RSP_2585	-	hypothetical protein
1175	 73.80	+1	1229004..1229732	+	242	77463140	-	RSP_2586	-	ABC multidrug efflux transporter, ATPase subunit
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.