IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
982	 69.86	0	1017366..1017866	-	166	77462947	-	RSP_2388	-	hypothetical protein
983	 69.11	0	1018151..1018681	+	176	77462948	-	RSP_2389	-	putative glutathione peroxidase
984	 74.41	+1	1018710..1019819	+	369	77462949	acuC1	RSP_2390	-	putative acetoin utilization protein
985	 74.41	+1	1019816..1020370	+	184	77462950	-	RSP_2391	-	2'-5' RNA ligase
986	 65.41	0	1020381..1020938	-	185	77462951	-	RSP_2392	-	putative membrane protein, periplasmic nitrate reductase NnuR
987	 75.00	+1	1021231..1022454	-	407	77462952	kdtA	RSP_2394	-	putative 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
988	 68.77	0	1022619..1023662	+	347	77462953	-	RSP_2395	-	BCCP, cytochrome c peroxidase
989	 70.06	0	1023737..1024738	-	333	77462954	-	RSP_2396	-	hypothetical protein
990	 65.10	0	1025030..1026049	-	339	77462955	-	RSP_2397	-	ABC putrescine transporter, periplasmic substrate-binding subunit
991	 66.54	0	1026077..1026877	-	266	77462956	-	RSP_2398	-	ABC putrescine transporter, inner membrane subunit
992	 65.77	0	1026870..1027763	-	297	77462957	-	RSP_2399	-	ABC putrescine transporter, inner membrane subunit
993	 72.44	0	1027765..1028769	-	334	77462958	-	RSP_2400	-	ABC putrescine transporter, ATPase subunit
994	 74.07	+1	1028860..1030317	-	485	77462959	-	RSP_2401	-	putative 6-aminohexanoate-cyclic-dimer hydrolase
995	 69.50	0	1030777..1032612	+	611	77462960	-	RSP_2402	-	putative TonB dependent vitamin B12 outer membrane receptor
996	 71.54	0	1032599..1033459	+	286	77462961	-	RSP_2403	-	ABC cobalamin/Fe3+-siderophore transporter, periplasmic substrate-binding subunit
997	 72.12	0	1033456..1034445	+	329	77462962	-	RSP_2404	-	ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit
998	 74.10	+1	1034442..1035194	+	250	77462963	-	RSP_2405	-	ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit
999	 75.76	+1	1035191..1035850	+	219	77462964	-	RSP_2406	-	hypothetical protein
1000	 71.51	0	1035995..1037728	-	577	77462965	-	RSP_2407	-	periplasmic sensor hybrid histidine kinase
1001	 70.73	0	1037772..1038017	-	81	77462966	-	RSP_2408	-	hypothetical protein
1002	 71.33	0	1038091..1039140	+	349	77462967	rluD	RSP_2409	-	ribosomal large subunit pseudouridine synthase D
1003	 66.11	0	1039301..1040197	+	298	77462968	rpoH1	RSP_2410	-	RNA polymerase factor sigma-32
1004	 70.79	0	1040755..1041555	-	266	77462969	-	RSP_2411	-	hypothetical protein
1005	 66.06	0	1041640..1043460	-	606	77462970	pepF	RSP_2412	-	oligoendopeptidase F
1006	 70.35	0	1043632..1045233	-	533	77462971	lig2	RSP_2413	-	ATP-dependent DNA ligase
1007	 71.88	0	1045230..1046381	-	383	77462972	-	RSP_2414	-	hypothetical protein
1008	 66.24	0	1046578..1047969	+	463	77462973	-	RSP_2415	-	hypothetical protein
1009	 65.93	0	1047977..1048927	+	316	77462974	-	RSP_2416	-	hypothetical protein
1010	 72.47	0	1048924..1049733	+	269	77462975	-	RSP_2417	-	hypothetical protein
1011	 65.15	0	1049765..1050490	+	241	77462976	-	RSP_2420	-	hypothetical protein
1012	 72.85	0	1050480..1051433	-	317	77462977	pldB	RSP_2418	-	putative esterase/lipase/thioesterase
1013	 65.61	0	1051430..1051714	-	94	77462978	-	RSP_2419	-	hypothetical protein
1014	 68.24	0	1051790..1052362	+	190	77462979	-	RSP_2421	-	hypothetical protein
1015	 69.96	0	1052447..1055239	+	930	77462980	mgpS	RSP_2422	-	putative ATP-dependent helicase, MgpS
1016	 71.04	0	1055245..1055541	+	98	77462981	-	RSP_2423	-	putative heat shock protein 15 (HSP15)
1017	 62.24	-1	1055596..1055934	+	112	77462982	-	RSP_2424	-	ferredoxin II
1018	 65.69	0	1056214..1056723	+	169	77462983	-	RSP_2425	-	CarD family transcriptional regulator
1019	 77.87	+2	1056911..1057660	-	249	77462984	cobV	RSP_2427	-	cobalamin-5'-phosphate synthase
1020	 73.25	+1	1057742..1058758	+	338	77462985	cobT	RSP_2428	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
1021	 69.67	0	1058814..1060742	-	642	77462986	-	RSP_2429	-	glutathione-regulated potassium-efflux system protein, kefB
1022	 73.83	+1	1060857..1063733	-	958	77462987	-	RSP_6052	-	hypothetical protein
1023	 69.25	0	1063855..1064589	+	244	77462988	-	RSP_2430	-	hypothetical protein
1024	 66.74	0	1064635..1065927	-	430	77462989	-	RSP_2431	-	putative O-acetylhomoserine sulfhydrylase
1025	 65.52	0	1066170..1066517	-	115	77462990	-	RSP_2432	-	hypothetical protein
1026	 57.11	-2	1066514..1066900	-	128	77462991	cheY2	RSP_2433	-	chemotaxis response regulator, CheY2
1027	 62.31	-1	1066878..1067795	-	305	77462992	cheR1	RSP_2434	-	putative MCP methyltransferase, CheR1
1028	 61.44	-1	1067792..1068250	-	152	77462993	cheW1	RSP_2435	-	putative chemotaxis scaffold protein, CheW1
1029	 63.85	-1	1068252..1070312	-	686	77462994	cheA1	RSP_2436	-	chemotaxis histidine protein kinase, CheA1
1030	 63.41	-1	1070320..1070688	-	122	77462995	cheY1	RSP_2437	-	chemotaxis response regulator, CheY1
1031	 62.46	-1	1070679..1070963	-	94	77462996	cheX	RSP_2438	-	putative CheX protein
1032	 61.17	-1	1070960..1071559	-	199	77462997	cheD	RSP_2439	-	chemoreceptor glutamine deamidase CheD
1033	 64.16	-1	1071682..1073994	-	770	77462998	mcpA	RSP_2440	-	methyl accepting chemotaxis protein
1034	 67.17	0	1074101..1075888	-	595	77462999	tlpS	RSP_2441	-	methyl-accepting chemotaxis sensory transducer
1035	 68.09	0	1075992..1077674	-	560	77463000	mcpB	RSP_2442	-	methyl accepting chemotaxis protein, McpB
1036	 65.31	0	1077763..1078131	-	122	77463001	cheY5	RSP_2443	-	putative chemotaxis response regulator, CheY5
1037	 74.85	+1	1078128..1078457	-	109	77463002	-	RSP_2444	-	hypothetical protein
1038	 64.90	0	1078538..1080742	+	734	77463003	-	RSP_2445	-	putative Alpha amylase
1039	 67.82	0	1080739..1084047	+	1102	77463004	-	RSP_2446	-	putative trehalose synthase
1040	 67.95	0	1084044..1086230	+	728	77463005	glgB1	RSP_2448	-	glycogen branching enzyme
1041	 67.05	0	1086227..1088293	+	688	77463006	-	RSP_2449	-	putative glycosyl hydrolase
1042	 68.75	0	1088290..1090068	+	592	77463007	-	RSP_2450	-	putative Alpha-amylase
1043	 70.96	0	1090065..1091882	+	605	77463008	-	RSP_2451	-	putative 4-alpha-glucanotransferase
1044	 69.46	0	1091879..1094494	+	871	77463009	-	RSP_2452	-	alpha amylase domain-containing protein
1045	 71.17	0	1094553..1095218	-	221	77463010	-	RSP_2453	-	putative oxidoreductase (NAD/NADP dependent)
1046	 67.14	0	1095338..1096801	-	487	77463011	purF	RSP_2454	-	amidophosphoribosyltransferase
1047	 69.59	0	1096886..1097500	-	204	77463012	-	RSP_2455	-	putative colicin V production protein, dedE
1048	 70.64	0	1097519..1098877	-	452	77463013	radA	RSP_2456	-	DNA repair protein RadA
1049	 68.78	0	1099010..1099435	-	141	77463014	-	RSP_2457	-	hypothetical protein
1050	 67.07	0	1099436..1100182	-	248	77463015	-	RSP_2458	-	ABC transporter, ATPase subunit
1051	 70.11	0	1100179..1100961	-	260	77463016	-	RSP_2459	-	ABC transporter, inner membrane subunit
1052	 71.33	0	1100958..1102007	-	349	77463017	alr	RSP_2460	-	alanine racemase
1053	 69.24	0	1102236..1102973	+	245	77463018	fabG	RSP_2461	-	3-oxoacyl-[acyl-carrier-protein] reductase
1054	 60.26	-2	1103152..1103385	+	77	77463019	acpP	RSP_2463	-	acyl carrier protein
1055	 69.20	0	1103882..1105144	+	420	77463020	fabF	RSP_2464	-	3-oxoacyl-(acyl carrier protein) synthase II
1056	 70.73	0	1105141..1106322	+	393	77463021	-	RSP_2465	-	hypothetical protein
1057	 67.41	0	1106432..1106836	+	134	77463022	-	RSP_2466	-	hypothetical protein
1058	 73.98	+1	1106883..1108127	+	414	77463023	-	RSP_2467	-	putative large terminase
1059	 70.41	0	1108200..1109375	+	391	77463024	-	RSP_2468	-	putative portal protein
1060	 67.95	0	1109377..1109610	+	77	77463025	-	RSP_2469	-	hypothetical protein
1061	 70.92	0	1109615..1110178	+	187	77463026	-	RSP_2470	-	prohead peptidase
1062	 66.50	0	1110244..1111440	+	398	77463027	-	RSP_2471	-	phage phi-C31 gp36 major capsid-like protein
1063	 69.83	0	1111535..1112134	+	199	77463028	-	RSP_2472	-	hypothetical protein
1064	 71.73	0	1112134..1112469	+	111	77463029	-	RSP_6053	-	putative phage tail-head adaptor
1065	 71.93	0	1112466..1112864	+	132	77463030	-	RSP_6054	-	hypothetical protein
1066	 67.63	0	1112902..1113315	+	137	77463031	-	RSP_2473	-	hypothetical protein
1067	 73.41	+1	1113315..1113833	+	172	77463032	-	RSP_2474	-	hypothetical protein
1068	 71.50	0	1113856..1114476	+	206	77463033	-	RSP_2475	-	putative phage tail minor protein
1069	 67.77	0	1114486..1115118	+	210	77463034	-	RSP_2476	-	hypothetical protein
1070	 66.55	0	1115118..1116002	+	294	77463035	-	RSP_2477	-	hypothetical protein
1071	 68.25	0	1115999..1116439	+	146	77463036	-	RSP_2478	-	hypothetical protein
1072	 69.44	0	1116439..1120329	+	1296	77463037	-	RSP_2479	-	putative phage host specificity protein
1073	 69.32	0	1120333..1120746	+	137	77463038	-	RSP_2480	-	hypothetical protein
1074	 66.79	0	1120739..1121545	+	268	77463039	cysE	RSP_2481	-	serine O-acetyltransferase
1075	 69.30	0	1121645..1122973	-	442	77463040	pdhB	RSP_4050	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1076	 66.74	0	1122984..1124375	-	463	77463041	pdhAb	RSP_4049	-	pyruvate dehydrogenase subunit beta
1077	 65.15	0	1124389..1125378	-	329	77463042	pdhAa	RSP_4047	-	pyruvate dehydrogenase E1 component, alpha subunit
1078	 66.01	0	1125601..1125903	-	100	77463043	-	RSP_4046	-	hypothetical protein
1079	 66.56	0	1126182..1127111	-	309	77463044	fbaB	RSP_4045	-	fructose-bisphosphate aldolase
1080	 68.68	0	1127213..1128406	-	397	77463045	pgk	RSP_4044	-	phosphoglycerate kinase
1081	 64.90	0	1128555..1129064	+	169	77463046	-	RSP_4043	-	peptidylprolyl isomerase
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.